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Protein
Submitted name:

Sex pilus assembly

Gene

traG

Organism
Vibrio cholerae
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Sex pilus assemblyImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:traGImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiVibrio choleraeImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri666 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular_location_section">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei337 – 356HelicalSequence analysisAdd BLAST20
Transmembranei362 – 383HelicalSequence analysisAdd BLAST22

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Cellular componenti

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Membrane

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR012931 TraG_N

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF07916 TraG_N, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q8KQU7-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MWEIYSIGDS AFLEQVLNAV AMITGTGDFT SMVRIGLLIG VLMVSVQALM
60 70 80 90 100
QGGRGINFQH VLVSWLVFAT MFGPSTRVSI EDAYTGQVRV VDNVPIGVAA
110 120 130 140 150
AGSTISTVGF QITRLFETAF STPAMTEYGF ASSLQSLIKV RKQVMDRSGL
160 170 180 190 200
GDANRVGGSD IEQSWFNYIK ECTLIGIDIG QKNLDQVLSD PNPMTAIRFD
210 220 230 240 250
SRIYGTRIML SGSSSDLDCT DAYSQLKLMT ESTFIPRLKQ VLSASLGTSS
260 270 280 290 300
ATDTDDVIRN ALNNLGLASV NTQEYMTASV LLPIYEQSVT GKYMDDQAFT
310 320 330 340 350
AAVMVNQAIE QRNTQWAAEQ TLFQSIVRPM MTFFEGFIYA ITPLMAFVIA
360 370 380 390 400
LGQIGMRMAG KYLLILLWIQ LWMPVMAIIN LYIHLTVAGK MSALDAFAGT
410 420 430 440 450
EVPSFAGMMQ MDSVLQTWIA TGGMLASSVP AISLMLVYGS AITATHLAGR
460 470 480 490 500
LQNGDAIDEK MASPDVAKNA PVMQSQSMFQ NSALTGSAMT GASNLLSSFS
510 520 530 540 550
VGNAVGSMVG SAKESMTQAT RAFSRQVGNT MSRTFGEKLS YDNLSSVGRQ
560 570 580 590 600
IGSSNSASSA VVNQVTDDLQ TRYGFGDDKK DAVRGLVSGV LSGGLRVGGD
610 620 630 640 650
GTITNPGEKE VADKGFLGRL LGTGGNDSPQ GNLPGMDKPD SSRVPKLSRV
660 670 680 690 700
RAGLDLGGNF SGQVESSEGS SRSTTANTLT GEMQSLASSD SRRAEYRDAM
710 720 730 740 750
VKDLSDSRRS GVEMSLSNQD YQSLQSSAQD VVTASNRFSE LDQASYSLSG
760 770 780 790 800
QRNTDGATLT RLAADNPEVM DYLGRYMNQH VEAGNRLREN LPMYQRLLPD
810 820 830 840 850
DNQAYVAAAM ESLTYSNSST PAERDNDYQA AMTVMAMATG ADLRSIQPRS
860 870 880 890 900
NEGLSSTAPT FGGTQSQVES GVLGGYEDAA TVQTQFNAAQ SAYQTNLSGI
910 920 930 940 950
DGQLNAHQQQ AQQAVATDTS TYQSGLNSEA GSQWRSRIMA DDSGVSGAEM
960 970 980 990 1000
FFNSASAIGD FSGKHTDAAL HTLNHFGEDY ESYKEQALED PGSRGFLHNA
1010 1020 1030 1040 1050
TVASKSTWDG LKAAVDAGTS LENPLTAFND AYSGSSSQYA SEVNWGTKSE
1060 1070 1080 1090 1100
AMLAGAFGAA VNNRYGEFLE QYADDFKQEA YSEGQRMGLT PIQSQVFAQA
1110 1120 1130 1140 1150
FNEGLAGRVF NSEDSSSWSP EMLGLREQML NEYRQKDESG AYIPDSVSEE
1160 1170 1180
DKAFVDKQIA VISNASLAGD YAQNNLIDIR AYNQASGRN
Length:1,189
Mass (Da):127,621
Last modified:October 1, 2002 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i5605EB558A0D78F9
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AY055428 Genomic DNA Translation: AAL59677.1

NCBI Reference Sequences

More...
RefSeqi
WP_000263682.1, NZ_PQCW01000001.1

Genome annotation databases

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|666.1969.peg.2661

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY055428 Genomic DNA Translation: AAL59677.1
RefSeqiWP_000263682.1, NZ_PQCW01000001.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

PATRICifig|666.1969.peg.2661

Family and domain databases

InterProiView protein in InterPro
IPR012931 TraG_N
PfamiView protein in Pfam
PF07916 TraG_N, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ8KQU7_VIBCL
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q8KQU7
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: October 1, 2002
Last sequence update: October 1, 2002
Last modified: May 23, 2018
This is version 32 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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