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Protein
Submitted name:

Cro/Cl family transcriptional regulator

Gene

s086

Organism
Vibrio cholerae
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Cro/Cl family transcriptional regulatorImported
Submitted name:
Phage regulatory proteinImported
Submitted name:
Putative phage regulatory proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:s086Imported
ORF Names:B7947_10295Imported, C1Y48_20110Imported, C9J66_12505Imported, EN12_03280Imported, ERS013198_02202Imported, ERS013199_02805Imported, ERS013202_02344Imported, ERS013206_02089Imported, ERS013208_03377Imported, ERS013262_05006Imported, VC1786ICE_95Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiVibrio choleraeImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri666 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000248087 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence
  • UP000236482 Componenti: Unassembled WGS sequence
  • UP000193951 Componenti: Unassembled WGS sequence
  • UP000036184 Componenti: Chromosome 1

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Phylogenomic databases

Database of Orthologous Groups

More...
OrthoDBi
1953284at2

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR010982 Lambda_DNA-bd_dom_sf
IPR031856 YdaS_antitoxin

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF15943 YdaS_antitoxin, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF47413 SSF47413, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q8KQU0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEVFNTTQKH LRRAIDLVGG QSALARAINS KQQNVWFWLN KSGRVPAEFV
60 70 80
LPIEQATQGQ VTRSQLRPDI YPECPSELKA SNQ
Length:83
Mass (Da):9,394
Last modified:October 1, 2002 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i862DD7A0B656C8BC
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AY055428 Genomic DNA Translation: AAL59694.1
JN648379 Genomic DNA Translation: AEU11461.1
KC886257 Genomic DNA Translation: AHM25137.1
CP007653 Genomic DNA Translation: AKO74272.1
KT151654 Genomic DNA Translation: ALP44310.1
KT151655 Genomic DNA Translation: ALP44397.1
KT151656 Genomic DNA Translation: ALP44491.1
KT151657 Genomic DNA Translation: ALP44577.1
KT151658 Genomic DNA Translation: ALP44669.1
KT151659 Genomic DNA Translation: ALP44762.1
KT151660 Genomic DNA Translation: ALP44851.1
KT151661 Genomic DNA Translation: ALP44946.1
KT151662 Genomic DNA Translation: ALP45033.1
KT151663 Genomic DNA Translation: ALP45132.1
KT151664 Genomic DNA Translation: ALP45234.1
CGIJ01000025 Genomic DNA Translation: CPR24617.1
CGII01000025 Genomic DNA Translation: CPR24618.1
CWQA01000011 Genomic DNA Translation: CSC08004.1
CWQG01000009 Genomic DNA Translation: CSC20753.1
CWQD01000010 Genomic DNA Translation: CSC47180.1
CWQX01000046 Genomic DNA Translation: CSC81647.1
CWPL01000836 Genomic DNA Translation: CSD72665.1
CWSS01000959 Genomic DNA Translation: CSI69531.1
MWFL01000039 Genomic DNA Translation: ORP12663.1
POTE01000086 Genomic DNA Translation: PNV69107.1
PYRF01000011 Genomic DNA Translation: PYC80960.1

NCBI Reference Sequences

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RefSeqi
WP_000451746.1, NZ_QEBN01000026.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
AKO74272; AKO74272; EN12_03280
CSC08004; CSC08004; ERS013198_02202
CSC19080; CSC19080; ERS013207_02179
CSC20753; CSC20753; ERS013202_02344
CSC47180; CSC47180; ERS013206_02089
CSC81647; CSC81647; ERS013199_02805
CSD72665; CSD72665; ERS013262_05006
CSI69531; CSI69531; ERS013208_03377

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
6802026

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
vcq:EN18_06700

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|666.1968.peg.1141

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY055428 Genomic DNA Translation: AAL59694.1
JN648379 Genomic DNA Translation: AEU11461.1
KC886257 Genomic DNA Translation: AHM25137.1
CP007653 Genomic DNA Translation: AKO74272.1
KT151654 Genomic DNA Translation: ALP44310.1
KT151655 Genomic DNA Translation: ALP44397.1
KT151656 Genomic DNA Translation: ALP44491.1
KT151657 Genomic DNA Translation: ALP44577.1
KT151658 Genomic DNA Translation: ALP44669.1
KT151659 Genomic DNA Translation: ALP44762.1
KT151660 Genomic DNA Translation: ALP44851.1
KT151661 Genomic DNA Translation: ALP44946.1
KT151662 Genomic DNA Translation: ALP45033.1
KT151663 Genomic DNA Translation: ALP45132.1
KT151664 Genomic DNA Translation: ALP45234.1
CGIJ01000025 Genomic DNA Translation: CPR24617.1
CGII01000025 Genomic DNA Translation: CPR24618.1
CWQA01000011 Genomic DNA Translation: CSC08004.1
CWQG01000009 Genomic DNA Translation: CSC20753.1
CWQD01000010 Genomic DNA Translation: CSC47180.1
CWQX01000046 Genomic DNA Translation: CSC81647.1
CWPL01000836 Genomic DNA Translation: CSD72665.1
CWSS01000959 Genomic DNA Translation: CSI69531.1
MWFL01000039 Genomic DNA Translation: ORP12663.1
POTE01000086 Genomic DNA Translation: PNV69107.1
PYRF01000011 Genomic DNA Translation: PYC80960.1
RefSeqiWP_000451746.1, NZ_QEBN01000026.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAKO74272; AKO74272; EN12_03280
CSC08004; CSC08004; ERS013198_02202
CSC19080; CSC19080; ERS013207_02179
CSC20753; CSC20753; ERS013202_02344
CSC47180; CSC47180; ERS013206_02089
CSC81647; CSC81647; ERS013199_02805
CSD72665; CSD72665; ERS013262_05006
CSI69531; CSI69531; ERS013208_03377
GeneIDi6802026
KEGGivcq:EN18_06700
PATRICifig|666.1968.peg.1141

Phylogenomic databases

OrthoDBi1953284at2

Family and domain databases

InterProiView protein in InterPro
IPR010982 Lambda_DNA-bd_dom_sf
IPR031856 YdaS_antitoxin
PfamiView protein in Pfam
PF15943 YdaS_antitoxin, 1 hit
SUPFAMiSSF47413 SSF47413, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ8KQU0_VIBCL
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q8KQU0
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: October 1, 2002
Last sequence update: October 1, 2002
Last modified: January 16, 2019
This is version 72 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Complete proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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