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Protein

50S ribosomal protein L13

Gene

rplM

Organism
Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS) (Chlorobium tepidum)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciCTEP194439:G1FZE-1822-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L13UniRule annotation
Gene namesi
Name:rplMUniRule annotation
Ordered Locus Names:CT1783
OrganismiChlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS) (Chlorobium tepidum)
Taxonomic identifieri194439 [NCBI]
Taxonomic lineageiBacteriaChlorobiChlorobiaChlorobialesChlorobiaceaeChlorobaculum
Proteomesi
  • UP000001007 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002617081 – 15050S ribosomal protein L13Add BLAST150

Proteomic databases

PRIDEiQ8KBK4

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi194439.CT1783

Structurei

3D structure databases

ProteinModelPortaliQ8KBK4
SMRiQ8KBK4
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL13 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108UM5 Bacteria
COG0102 LUCA
HOGENOMiHOG000225286
KOiK02871
OMAiVLMGKHK
OrthoDBiPOG091H013T

Family and domain databases

CDDicd00392 Ribosomal_L13, 1 hit
Gene3Di3.90.1180.10, 1 hit
HAMAPiMF_01366 Ribosomal_L13, 1 hit
InterProiView protein in InterPro
IPR005822 Ribosomal_L13
IPR005823 Ribosomal_L13_bac-type
IPR036899 Ribosomal_L13_sf
PANTHERiPTHR11545 PTHR11545, 1 hit
PfamiView protein in Pfam
PF00572 Ribosomal_L13, 1 hit
PIRSFiPIRSF002181 Ribosomal_L13, 1 hit
SUPFAMiSSF52161 SSF52161, 1 hit
TIGRFAMsiTIGR01066 rplM_bact, 1 hit

Sequencei

Sequence statusi: Complete.

Q8KBK4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKTLSFKTY SAKPGEVKRT WHIIDAENQV LGRMAAQIAN VLRGKHKPQF
60 70 80 90 100
TPHIDTGDFV VVTNAAKVAL SGKKRDDKTY FSHSHYPGGV RIDSVKDLLQ
110 120 130 140 150
KKPEKVIEHA VWGMLPHNNL GRQLFKKLKV YAGPEHPHAA QMPVEMKINQ
Length:150
Mass (Da):16,903
Last modified:October 1, 2002 - v1
Checksum:i16A80F0599D34706
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE006470 Genomic DNA Translation: AAM73004.1
RefSeqiNP_662662.1, NC_002932.3
WP_010933443.1, NC_002932.3

Genome annotation databases

EnsemblBacteriaiAAM73004; AAM73004; CT1783
GeneIDi1008184
KEGGicte:CT1783
PATRICifig|194439.7.peg.1617

Similar proteinsi

Entry informationi

Entry nameiRL13_CHLTE
AccessioniPrimary (citable) accession number: Q8KBK4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: October 1, 2002
Last modified: March 28, 2018
This is version 89 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

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