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Protein

SRR1-like protein

Gene

Srrd

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

May be involved in a circadian clock input pathway.By similarity

GO - Biological processi

Keywordsi

Biological processBiological rhythms

Names & Taxonomyi

Protein namesi
Recommended name:
SRR1-like protein
Alternative name(s):
SRR1 domain-containing protein
Gene namesi
Name:Srrd
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 5

Organism-specific databases

MGIiMGI:1917368 Srrd

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001861241 – 249SRR1-like proteinAdd BLAST249

Proteomic databases

PaxDbiQ8K2M3
PRIDEiQ8K2M3

PTM databases

PhosphoSitePlusiQ8K2M3

Expressioni

Gene expression databases

BgeeiENSMUSG00000029346
CleanExiMM_SRRD
ExpressionAtlasiQ8K2M3 baseline and differential
GenevisibleiQ8K2M3 MM

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000031289

Structurei

3D structure databases

SMRiQ8K2M3
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the SRR1 family.Curated

Phylogenomic databases

eggNOGiKOG3131 Eukaryota
ENOG4111JHV LUCA
GeneTreeiENSGT00390000003948
HOGENOMiHOG000154422
HOVERGENiHBG062240
InParanoidiQ8K2M3
PhylomeDBiQ8K2M3
TreeFamiTF323595

Family and domain databases

InterProiView protein in InterPro
IPR012942 SRR1-like
PfamiView protein in Pfam
PF07985 SRR1, 1 hit

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q8K2M3-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MAAAALEPWS AVAPRRRKRA AGRRPRPGEG PRAEPEADGE AVLRRLREAE
60 70 80 90 100
EDLRISDFCS SALETITECL RKQLEQLQPL TEALGRLHLG SSLPSASQEP
110 120 130 140 150
LASSASHVKC VCYGLGTFAS CPTARIQLAF MLLFLEKCQV PRSHCWVYDP
160 170 180 190 200
LFSQTEVSVL TSLGVTVLSE NEEGKRSVQG QPTVFYMPHC GTALYNNLLW
210 220 230 240
SNWSADALSR VLIIGNSFRG LEERLLARIL QENYPYIAKV SDRIAGPGF
Length:249
Mass (Da):27,502
Last modified:November 24, 2009 - v4
Checksum:i435D0871473EBCF7
GO
Isoform 2 (identifier: Q8K2M3-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     249-249: Missing.

Show »
Length:248
Mass (Da):27,355
Checksum:i8D0871473EBCF735
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti36E → D in BAB28374 (PubMed:16141072).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_038445249Missing in isoform 2. 1 Publication1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC123848 Genomic DNA No translation available.
BC030678 mRNA Translation: AAH30678.1
BC125007 mRNA No translation available.
AK012640 mRNA Translation: BAB28374.1
CCDSiCCDS51614.1 [Q8K2M3-1]
RefSeqiNP_081599.2, NM_027323.2 [Q8K2M3-1]
UniGeneiMm.172947
Mm.486479

Genome annotation databases

EnsembliENSMUST00000031289; ENSMUSP00000031289; ENSMUSG00000029346 [Q8K2M3-1]
GeneIDi70118
KEGGimmu:70118
UCSCiuc008ysz.2 mouse [Q8K2M3-1]

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Entry informationi

Entry nameiSRR1L_MOUSE
AccessioniPrimary (citable) accession number: Q8K2M3
Secondary accession number(s): Q08AU8, Q9CSK3
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 30, 2003
Last sequence update: November 24, 2009
Last modified: February 28, 2018
This is version 99 of the entry and version 4 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

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