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Entry version 31 (12 Aug 2020)
Sequence version 1 (01 Oct 2002)
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Protein

Uncharacterized protein VP5

Gene

S5

Organism
Fiji disease virus (isolate Sugarcane) (FDV)
Status
Reviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Uncharacterized protein VP5
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:S5
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiFiji disease virus (isolate Sugarcane) (FDV)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri648172 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiVirusesRiboviriaOrthornaviraeDuplornaviricotaResentoviricetesReoviralesReoviridaeSpinareovirinaeFijivirus
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section only exists in viral entries and indicates the host(s) either as a specific organism or taxonomic group of organisms that are susceptible to be infected by a virus.<p><a href='/help/virus_host' target='_top'>More...</a></p>Virus hostiSaccharum officinarum (Sugarcane) [TaxID: 4547]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001677 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Genome

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004033961 – 1002Uncharacterized protein VP5Add BLAST1002

Proteomic databases

PRoteomics IDEntifications database

More...
PRIDEi
Q8JYK0

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q8JYK0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSEEEKIRII CNTNNEHRIL KYEKDESNTR IITSIILHEI EDKSLIPAID
60 70 80 90 100
EMMENEVNAE IKTSISEFFD LVSNAFVAHY DEIVRKNNEN ANQNITDQNE
110 120 130 140 150
IIEIKTQIPG LEKLHVRKVK FDQLMKIYSL NEEVAKKFPL LDVINGKFTV
160 170 180 190 200
EQLKEGGLFD MTNVLPVLAE IFVITLSLGT VYGGAVFFIL NWYTNYESYA
210 220 230 240 250
LILLQILHAI IQAIKRHVKP QKELISYVNK VKNFEAGQVE IIDPFFVFNK
260 270 280 290 300
VNEKFEISKY RIEAVTHTNK PSIAKPLNEA FQQLINNIKV VKKISKPIKY
310 320 330 340 350
IGYVKGFTND TVIGMKGKKL PNIKRNVVGV YLDEKSSTLW VSHPLLCDAF
360 370 380 390 400
ELLHERNIGD GKKMSLDEIG KIPDDLVIFE IYDDEKLNSL ILPFMESVDL
410 420 430 440 450
KTNHQVSYGY KTKTNEQAHY KFVSEYGNMN FNDPIFSIFF PNHFIKVSYD
460 470 480 490 500
VGIDVSVCEL AGYNEMDTFT KLVTQQIEST ASQMNLHEAL NVIHNSHLDC
510 520 530 540 550
GCYDNFGIFL NEYFTTGEVL EHIKETKVKP SDYHLNKMYV DMFTKRRPTE
560 570 580 590 600
LQHLLDKESK CMNLAYNPAF FDAEFDLVGD KNDHTLVVKF PRRKPYYRFL
610 620 630 640 650
DENHGDASTL SLYEMVISCK NGKVSNATKV GFNVMSKSIL PNPLLKKGGR
660 670 680 690 700
GSPNVDKTRY FEYDLVFVTF SGDITQYLIN DWIGENLSVY DESHSGVDLF
710 720 730 740 750
KRSSVFQNGC FVKSADLHNE GLIELLRQPQ NKLNLFMEGI VGAMCTDMEM
760 770 780 790 800
PSFKSKMLQG IEALQCKKDN EVLVSGTSSS NQAYSFRNYI RSTRSGDVIT
810 820 830 840 850
RFERCIKIKS ELHSPQKMCD NTDWFEFGRL GHLSFGTNLS EVIRSKHELL
860 870 880 890 900
TSHPCGVRFR SFGYFRFGKS FKCKTCRNSY QNLFRFFHVW IGATIIQRVK
910 920 930 940 950
SVSLVEVLSN LELNFMKLSQ EHNKCSQYQF DLYDEHILNR ILESKQDIID
960 970 980 990 1000
VLLTSNDYNR LLNVISQIRI SASELQHING ISKANLVIKI HLLSVIRSVC

VD
Length:1,002
Mass (Da):115,299
Last modified:October 1, 2002 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iA5474325F55BD9B8
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
AY029521 Genomic RNA Translation: AAK40250.1

NCBI Reference Sequences

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RefSeqi
YP_249763.1, NC_007160.1

Genome annotation databases

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
5075883

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
vg:5075883

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY029521 Genomic RNA Translation: AAK40250.1
RefSeqiYP_249763.1, NC_007160.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

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SWISS-MODEL-Workspacei
Submit a new modelling project...

Proteomic databases

PRIDEiQ8JYK0

Genome annotation databases

GeneIDi5075883
KEGGivg:5075883

Family and domain databases

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiVP5_FDVS
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q8JYK0
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 11, 2011
Last sequence update: October 1, 2002
Last modified: August 12, 2020
This is version 31 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Reference proteome
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