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Protein

Uncharacterized protein C9orf40

Gene

C9orf40

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein C9orf40
Gene namesi
Name:C9orf40
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 9

Organism-specific databases

EuPathDBiHostDB:ENSG00000135045.6
HGNCiHGNC:23433 C9orf40
neXtProtiNX_Q8IXQ3

Pathology & Biotechi

Organism-specific databases

OpenTargetsiENSG00000135045
PharmGKBiPA134870430

Polymorphism and mutation databases

BioMutaiC9orf40
DMDMi73620021

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000896821 – 194Uncharacterized protein C9orf40Add BLAST194

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei69PhosphoserineCombined sources1
Modified residuei76PhosphoserineCombined sources1

Keywords - PTMi

Phosphoprotein

Proteomic databases

EPDiQ8IXQ3
MaxQBiQ8IXQ3
PaxDbiQ8IXQ3
PeptideAtlasiQ8IXQ3
PRIDEiQ8IXQ3
ProteomicsDBi71036
TopDownProteomicsiQ8IXQ3

PTM databases

iPTMnetiQ8IXQ3
PhosphoSitePlusiQ8IXQ3

Expressioni

Gene expression databases

BgeeiENSG00000135045 Expressed in 209 organ(s), highest expression level in secondary oocyte
CleanExiHS_C9orf40
GenevisibleiQ8IXQ3 HS

Organism-specific databases

HPAiHPA042167

Interactioni

Protein-protein interaction databases

BioGridi120388, 15 interactors
IntActiQ8IXQ3, 1 interactor

Structurei

3D structure databases

ProteinModelPortaliQ8IXQ3
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi28 – 32Poly-Pro5
Compositional biasi97 – 103Poly-Pro7
Compositional biasi119 – 122Poly-Gly4

Phylogenomic databases

eggNOGiENOG410IWV7 Eukaryota
ENOG41116VB LUCA
GeneTreeiENSGT00390000001325
HOGENOMiHOG000111638
HOVERGENiHBG081157
InParanoidiQ8IXQ3
OMAiTFHVPWK
OrthoDBiEOG091G11ZM
PhylomeDBiQ8IXQ3
TreeFamiTF338442

Family and domain databases

InterProiView protein in InterPro
IPR020521 Uncharacterised_C9orf40
IPR033461 WRNPLPNID
PfamiView protein in Pfam
PF15017 WRNPLPNID, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD309264 C9orf40, 1 hit

Sequencei

Sequence statusi: Complete.

Q8IXQ3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAKRRAAEPV TFHVPWKRLL LCDFAEQPPP PPLWIRPPGV AHAGQLLGVP
60 70 80 90 100
EQHRKRKIDA GTMAEPSASP SKRRDSGDNS APSGQEREDH GLETGDPPLP
110 120 130 140 150
PPPVLPGPGE ELPGARLPGG GGDDGAGRAG PPRGDWGVAS RQHNEEFWQY
160 170 180 190
NTFQYWRNPL PPIDLADIED LSEDTLTEAT LQGRNEGAEV DMES
Length:194
Mass (Da):21,063
Last modified:March 1, 2003 - v1
Checksum:iE7DE67DA59393731
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti141R → C in BAA91449 (PubMed:14702039).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK000972 mRNA Translation: BAA91449.1
AL158825 Genomic DNA No translation available.
BC039588 mRNA Translation: AAH39588.1
CCDSiCCDS6648.1
RefSeqiNP_060468.2, NM_017998.2
UniGeneiHs.532296

Genome annotation databases

EnsembliENST00000376854; ENSP00000366050; ENSG00000135045
GeneIDi55071
KEGGihsa:55071
UCSCiuc004ajo.5 human

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK000972 mRNA Translation: BAA91449.1
AL158825 Genomic DNA No translation available.
BC039588 mRNA Translation: AAH39588.1
CCDSiCCDS6648.1
RefSeqiNP_060468.2, NM_017998.2
UniGeneiHs.532296

3D structure databases

ProteinModelPortaliQ8IXQ3
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi120388, 15 interactors
IntActiQ8IXQ3, 1 interactor

PTM databases

iPTMnetiQ8IXQ3
PhosphoSitePlusiQ8IXQ3

Polymorphism and mutation databases

BioMutaiC9orf40
DMDMi73620021

Proteomic databases

EPDiQ8IXQ3
MaxQBiQ8IXQ3
PaxDbiQ8IXQ3
PeptideAtlasiQ8IXQ3
PRIDEiQ8IXQ3
ProteomicsDBi71036
TopDownProteomicsiQ8IXQ3

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000376854; ENSP00000366050; ENSG00000135045
GeneIDi55071
KEGGihsa:55071
UCSCiuc004ajo.5 human

Organism-specific databases

CTDi55071
EuPathDBiHostDB:ENSG00000135045.6
GeneCardsiC9orf40
H-InvDBiHIX0008103
HGNCiHGNC:23433 C9orf40
HPAiHPA042167
neXtProtiNX_Q8IXQ3
OpenTargetsiENSG00000135045
PharmGKBiPA134870430
GenAtlasiSearch...

Phylogenomic databases

eggNOGiENOG410IWV7 Eukaryota
ENOG41116VB LUCA
GeneTreeiENSGT00390000001325
HOGENOMiHOG000111638
HOVERGENiHBG081157
InParanoidiQ8IXQ3
OMAiTFHVPWK
OrthoDBiEOG091G11ZM
PhylomeDBiQ8IXQ3
TreeFamiTF338442

Miscellaneous databases

GenomeRNAii55071
PROiPR:Q8IXQ3

Gene expression databases

BgeeiENSG00000135045 Expressed in 209 organ(s), highest expression level in secondary oocyte
CleanExiHS_C9orf40
GenevisibleiQ8IXQ3 HS

Family and domain databases

InterProiView protein in InterPro
IPR020521 Uncharacterised_C9orf40
IPR033461 WRNPLPNID
PfamiView protein in Pfam
PF15017 WRNPLPNID, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD309264 C9orf40, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiCI040_HUMAN
AccessioniPrimary (citable) accession number: Q8IXQ3
Secondary accession number(s): Q9NWD3
Entry historyiIntegrated into UniProtKB/Swiss-Prot: August 16, 2005
Last sequence update: March 1, 2003
Last modified: November 7, 2018
This is version 113 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 9
    Human chromosome 9: entries, gene names and cross-references to MIM
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Main funding by: National Institutes of Health

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