UniProtKB - Q8IV50 (LYSM2_HUMAN)
Protein
LysM and putative peptidoglycan-binding domain-containing protein 2
Gene
LYSMD2
Organism
Homo sapiens (Human)
Status
Names & Taxonomyi
Protein namesi | Recommended name: LysM and putative peptidoglycan-binding domain-containing protein 2 |
Gene namesi | Name:LYSMD2 |
Organismi | Homo sapiens (Human) |
Taxonomic identifieri | 9606 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Proteomesi |
|
Organism-specific databases
EuPathDBi | HostDB:ENSG00000140280.13 |
HGNCi | HGNC:28571, LYSMD2 |
neXtProti | NX_Q8IV50 |
Pathology & Biotechi
Organism-specific databases
OpenTargetsi | ENSG00000140280 |
PharmGKBi | PA142671494 |
Miscellaneous databases
Pharosi | Q8IV50, Tdark |
Polymorphism and mutation databases
BioMutai | LYSMD2 |
DMDMi | 74728034 |
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Initiator methioninei | RemovedCombined sources | |||
ChainiPRO_0000248002 | 2 – 215 | LysM and putative peptidoglycan-binding domain-containing protein 2Add BLAST | 214 |
Amino acid modifications
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Modified residuei | 2 | N-acetylalanineCombined sources | 1 | |
Modified residuei | 5 | PhosphoserineCombined sources | 1 | |
Modified residuei | 24 | PhosphoserineCombined sources | 1 | |
Modified residuei | 33 | PhosphoserineCombined sources | 1 | |
Modified residuei | 57 | PhosphoserineCombined sources | 1 |
Keywords - PTMi
Acetylation, PhosphoproteinProteomic databases
EPDi | Q8IV50 |
jPOSTi | Q8IV50 |
MassIVEi | Q8IV50 |
MaxQBi | Q8IV50 |
PaxDbi | Q8IV50 |
PeptideAtlasi | Q8IV50 |
PRIDEi | Q8IV50 |
ProteomicsDBi | 70660 [Q8IV50-1] 70661 [Q8IV50-2] |
PTM databases
iPTMneti | Q8IV50 |
PhosphoSitePlusi | Q8IV50 |
Expressioni
Gene expression databases
Bgeei | ENSG00000140280, Expressed in quadriceps femoris and 225 other tissues |
ExpressionAtlasi | Q8IV50, baseline and differential |
Genevisiblei | Q8IV50, HS |
Organism-specific databases
HPAi | ENSG00000140280, Tissue enhanced (blood) |
Interactioni
Binary interactionsi
Hide detailsIsoform 2 [Q8IV50-2]
With | #Exp. | IntAct |
---|---|---|
CEP19 [Q96LK0] | 3 | EBI-19761491,EBI-741885 |
DUSP4 [Q13115] | 3 | EBI-19761491,EBI-6591081 |
LCN9 [Q8WX39] | 3 | EBI-19761491,EBI-19762110 |
Protein-protein interaction databases
BioGRIDi | 129172, 18 interactors |
IntActi | Q8IV50, 15 interactors |
STRINGi | 9606.ENSP00000267838 |
Miscellaneous databases
RNActi | Q8IV50, protein |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 71 – 115 | LysMPROSITE-ProRule annotationAdd BLAST | 45 |
Phylogenomic databases
eggNOGi | ENOG502S0XR, Eukaryota |
GeneTreei | ENSGT00940000160054 |
HOGENOMi | CLU_079453_1_0_1 |
InParanoidi | Q8IV50 |
OMAi | QDIEGPS |
OrthoDBi | 1553362at2759 |
PhylomeDBi | Q8IV50 |
TreeFami | TF318444 |
Family and domain databases
CDDi | cd00118, LysM, 1 hit |
Gene3Di | 3.10.350.10, 1 hit |
InterProi | View protein in InterPro IPR018392, LysM_dom IPR036779, LysM_dom_sf |
Pfami | View protein in Pfam PF01476, LysM, 1 hit |
SMARTi | View protein in SMART SM00257, LysM, 1 hit |
PROSITEi | View protein in PROSITE PS51782, LYSM, 1 hit |
s (2+)i Sequence
Sequence statusi: Complete.
: The displayed sequence is further processed into a mature form. Sequence processingi
This entry describes 2 produced by isoformsialternative splicing. AlignAdd to basketThis entry has 2 described isoforms and 1 potential isoform that is computationally mapped.Show allAlign All
Isoform 1 (identifier: Q8IV50-1) [UniParc]FASTAAdd to basket
This isoform has been chosen as the sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. canonicali
10 20 30 40 50
MADSSPALSL REGGPRAPRP SAPSPPPRSR SGSESEEAEL SLSLARTKTR
60 70 80 90 100
SYGSTASVRA PLGAGVIERH VEHRVRAGDT LQGIALKYGV TMEQIKRANK
110 120 130 140 150
LFTNDCIFLK KTLNIPVISE KPLLFNGLNS IDSPENETAD NSFSQEEEPV
160 170 180 190 200
VAGEDLPPPS PQESDVQPVQ PEEVSARDFL QRLDLQIKLS TQAAKKLKEE
210
SRDEESPYAT SLYHS
Computationally mapped potential isoform sequencesi
There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basketH0YK98 | H0YK98_HUMAN | LysM and putative peptidoglycan-bin... | LYSMD2 | 108 | Annotation score: |
Natural variant
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Natural variantiVAR_027198 | 107 | I → V. Corresponds to variant dbSNP:rs3751593Ensembl. | 1 | |
Natural variantiVAR_027199 | 164 | S → F. Corresponds to variant dbSNP:rs7168775Ensembl. | 1 |
Alternative sequence
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Alternative sequenceiVSP_020123 | 1 – 91 | Missing in isoform 2. 1 PublicationAdd BLAST | 91 |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AY125955 mRNA Translation: AAM94507.1 BC022075 mRNA Translation: AAH22075.1 BC033515 mRNA Translation: AAH33515.1 CR936638 mRNA Translation: CAI56778.1 |
CCDSi | CCDS10143.1 [Q8IV50-1] CCDS45259.1 [Q8IV50-2] |
RefSeqi | NP_001137389.1, NM_001143917.1 [Q8IV50-2] NP_699205.1, NM_153374.2 [Q8IV50-1] XP_016877546.1, XM_017022057.1 |
Genome annotation databases
Ensembli | ENST00000267838; ENSP00000267838; ENSG00000140280 [Q8IV50-1] ENST00000454181; ENSP00000410424; ENSG00000140280 [Q8IV50-2] ENST00000560491; ENSP00000453933; ENSG00000140280 [Q8IV50-2] |
GeneIDi | 256586 |
KEGGi | hsa:256586 |
UCSCi | uc002abi.4, human [Q8IV50-1] |
Keywords - Coding sequence diversityi
Alternative splicing, PolymorphismSimilar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AY125955 mRNA Translation: AAM94507.1 BC022075 mRNA Translation: AAH22075.1 BC033515 mRNA Translation: AAH33515.1 CR936638 mRNA Translation: CAI56778.1 |
CCDSi | CCDS10143.1 [Q8IV50-1] CCDS45259.1 [Q8IV50-2] |
RefSeqi | NP_001137389.1, NM_001143917.1 [Q8IV50-2] NP_699205.1, NM_153374.2 [Q8IV50-1] XP_016877546.1, XM_017022057.1 |
3D structure databases
SMRi | Q8IV50 |
ModBasei | Search... |
Protein-protein interaction databases
BioGRIDi | 129172, 18 interactors |
IntActi | Q8IV50, 15 interactors |
STRINGi | 9606.ENSP00000267838 |
PTM databases
iPTMneti | Q8IV50 |
PhosphoSitePlusi | Q8IV50 |
Polymorphism and mutation databases
BioMutai | LYSMD2 |
DMDMi | 74728034 |
Proteomic databases
EPDi | Q8IV50 |
jPOSTi | Q8IV50 |
MassIVEi | Q8IV50 |
MaxQBi | Q8IV50 |
PaxDbi | Q8IV50 |
PeptideAtlasi | Q8IV50 |
PRIDEi | Q8IV50 |
ProteomicsDBi | 70660 [Q8IV50-1] 70661 [Q8IV50-2] |
Protocols and materials databases
Antibodypediai | 24890, 42 antibodies |
DNASUi | 256586 |
Genome annotation databases
Ensembli | ENST00000267838; ENSP00000267838; ENSG00000140280 [Q8IV50-1] ENST00000454181; ENSP00000410424; ENSG00000140280 [Q8IV50-2] ENST00000560491; ENSP00000453933; ENSG00000140280 [Q8IV50-2] |
GeneIDi | 256586 |
KEGGi | hsa:256586 |
UCSCi | uc002abi.4, human [Q8IV50-1] |
Organism-specific databases
CTDi | 256586 |
EuPathDBi | HostDB:ENSG00000140280.13 |
GeneCardsi | LYSMD2 |
HGNCi | HGNC:28571, LYSMD2 |
HPAi | ENSG00000140280, Tissue enhanced (blood) |
neXtProti | NX_Q8IV50 |
OpenTargetsi | ENSG00000140280 |
PharmGKBi | PA142671494 |
GenAtlasi | Search... |
Phylogenomic databases
eggNOGi | ENOG502S0XR, Eukaryota |
GeneTreei | ENSGT00940000160054 |
HOGENOMi | CLU_079453_1_0_1 |
InParanoidi | Q8IV50 |
OMAi | QDIEGPS |
OrthoDBi | 1553362at2759 |
PhylomeDBi | Q8IV50 |
TreeFami | TF318444 |
Enzyme and pathway databases
PathwayCommonsi | Q8IV50 |
Miscellaneous databases
BioGRID-ORCSi | 256586, 3 hits in 845 CRISPR screens |
GenomeRNAii | 256586 |
Pharosi | Q8IV50, Tdark |
PROi | PR:Q8IV50 |
RNActi | Q8IV50, protein |
Gene expression databases
Bgeei | ENSG00000140280, Expressed in quadriceps femoris and 225 other tissues |
ExpressionAtlasi | Q8IV50, baseline and differential |
Genevisiblei | Q8IV50, HS |
Family and domain databases
CDDi | cd00118, LysM, 1 hit |
Gene3Di | 3.10.350.10, 1 hit |
InterProi | View protein in InterPro IPR018392, LysM_dom IPR036779, LysM_dom_sf |
Pfami | View protein in Pfam PF01476, LysM, 1 hit |
SMARTi | View protein in SMART SM00257, LysM, 1 hit |
PROSITEi | View protein in PROSITE PS51782, LYSM, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | LYSM2_HUMAN | |
Accessioni | Q8IV50Primary (citable) accession number: Q8IV50 Secondary accession number(s): Q5CZ88, Q8WTV3 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | September 5, 2006 |
Last sequence update: | March 1, 2003 | |
Last modified: | December 2, 2020 | |
This is version 130 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Chordata Protein Annotation Program | |
Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. |
Miscellaneousi
Keywords - Technical termi
Reference proteomeDocuments
- Human polymorphisms and disease mutations
Index of human polymorphisms and disease mutations - Human chromosome 15
Human chromosome 15: entries, gene names and cross-references to MIM - Human entries with polymorphisms or disease mutations
List of human entries with polymorphisms or disease mutations