UniProtKB - Q8H1M0 (FDL16_ARATH)
Protein
F-box/FBD/LRR-repeat protein At2g26030
Gene
At2g26030
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Names & Taxonomyi
Protein namesi | Recommended name: F-box/FBD/LRR-repeat protein At2g26030 |
Gene namesi | Ordered Locus Names:At2g26030 ORF Names:T19L18.16 |
Organismi | Arabidopsis thaliana (Mouse-ear cress) |
Taxonomic identifieri | 3702 [NCBI] |
Taxonomic lineagei | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › eudicotyledons › Gunneridae › Pentapetalae › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis |
Proteomesi |
|
Organism-specific databases
Araporti | AT2G26030 |
TAIRi | locus:2057422, AT2G26030 |
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000283109 | 1 – 442 | F-box/FBD/LRR-repeat protein At2g26030Add BLAST | 442 |
Proteomic databases
PaxDbi | Q8H1M0 |
PRIDEi | Q8H1M0 |
ProteomicsDBi | 230873 [Q8H1M0-1] |
Interactioni
Protein-protein interaction databases
BioGRIDi | 2496, 1 interactor |
IntActi | Q8H1M0, 1 interactor |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 3 – 49 | F-boxPROSITE-ProRule annotationAdd BLAST | 47 | |
Repeati | 128 – 160 | LRR 1Add BLAST | 33 | |
Repeati | 162 – 187 | LRR 2Add BLAST | 26 | |
Repeati | 188 – 214 | LRR 3Add BLAST | 27 | |
Repeati | 234 – 260 | LRR 4Add BLAST | 27 | |
Repeati | 278 – 309 | LRR 5Add BLAST | 32 | |
Repeati | 324 – 352 | LRR 6Add BLAST | 29 | |
Domaini | 358 – 410 | FBDAdd BLAST | 53 |
Keywords - Domaini
Leucine-rich repeat, RepeatPhylogenomic databases
eggNOGi | ENOG502RYTW, Eukaryota |
HOGENOMi | CLU_010721_1_3_1 |
InParanoidi | Q8H1M0 |
PhylomeDBi | Q8H1M0 |
Family and domain databases
Gene3Di | 3.80.10.10, 1 hit |
InterProi | View protein in InterPro IPR036047, F-box-like_dom_sf IPR001810, F-box_dom IPR006566, FBD IPR013101, Leu-rich_rpt_2 IPR032675, LRR_dom_sf |
Pfami | View protein in Pfam PF00646, F-box, 1 hit PF08387, FBD, 1 hit PF07723, LRR_2, 1 hit |
SMARTi | View protein in SMART SM00579, FBD, 1 hit SM00256, FBOX, 1 hit |
SUPFAMi | SSF81383, SSF81383, 1 hit |
PROSITEi | View protein in PROSITE PS50181, FBOX, 1 hit |
(1+)i Sequence
Sequence statusi: Complete.
This entry describes 1 produced by isoform ialternative splicing. AlignAdd to basketNote: A number of isoforms are produced. According to EST sequences.
This entry has 1 described isoform and 3 potential isoforms that are computationally mapped.Show allAlign All
Isoform 1 (identifier: Q8H1M0-1) [UniParc]FASTAAdd to basket
This isoform has been chosen as the sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. canonicali
10 20 30 40 50
MNCDRICELP DSLLTQVLSY LPTIDSVKTS VLSKRWEFLW LRVPVLDLKV
60 70 80 90 100
SDFPDENYAS FIDNFLEFNR KSRMRKFKLK YDEYTYDDDR LAGWVVTTVD
110 120 130 140 150
RGIQHLDAKG FETNMCVREF MPQNIYKCNT LVSLMLVTVG IENPEFVVSL
160 170 180 190 200
PSLKIMHLED VWYYDDPLIM EKIISGCPVL EDFVLIRPID FCNLDVLQFL
210 220 230 240 250
RVRSLSLRSF RLTFEYSVSC TYFSVEIDAP RLEYLNFNDD QSDTIVVKNM
260 270 280 290 300
TSLSMIDIDS EFNVKFGGSR LEPGDLRKRD IIRDFLTAIS CVRHMIISRR
310 320 330 340 350
TLEVLDRYSK LVPIPKFDNL YRLQAAVSRS MLQLLLVFLE SCPNLENLIL
360 370 380 390 400
DFTVSTEPEQ DGLTYVPQCL LSSLECVEIR ELIMGEETGE KLVRYFLKNS
410 420 430 440
VVLKKLILRL EDSSIANQDS DIFKELSTFT KRSRSCEVII IH
Computationally mapped potential isoform sequencesi
There are 3 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basketA0A1P8AXL6 | A0A1P8AXL6_ARATH | F-box/RNI-like/FBD-like domains-con... | At2g26030, T19L18.16, T19L18_16 | 447 | Annotation score: | ||
F4ITL1 | F4ITL1_ARATH | F-box/RNI-like/FBD-like domains-con... | At2g26030, T19L18.16, T19L18_16 | 369 | Annotation score: | ||
A0A1P8AXJ3 | A0A1P8AXJ3_ARATH | F-box/RNI-like/FBD-like domains-con... | At2g26030, T19L18.16, T19L18_16 | 287 | Annotation score: |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AC004747 Genomic DNA Translation: AAC31233.1 CP002685 Genomic DNA Translation: AEC07786.1 CP002685 Genomic DNA Translation: AEC07787.1 AY144457 mRNA Translation: AAN52167.1 AY649316 mRNA Translation: AAT69233.1 AK176562 mRNA Translation: BAD44325.1 |
PIRi | T02620 |
RefSeqi | NP_001031420.1, NM_001036343.1 [Q8H1M0-1] NP_180173.1, NM_128162.3 [Q8H1M0-1] |
Genome annotation databases
EnsemblPlantsi | AT2G26030.1; AT2G26030.1; AT2G26030 [Q8H1M0-1] AT2G26030.3; AT2G26030.3; AT2G26030 [Q8H1M0-1] |
GeneIDi | 817144 |
Gramenei | AT2G26030.1; AT2G26030.1; AT2G26030 [Q8H1M0-1] AT2G26030.3; AT2G26030.3; AT2G26030 [Q8H1M0-1] |
KEGGi | ath:AT2G26030 |
Keywords - Coding sequence diversityi
Alternative splicingSimilar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AC004747 Genomic DNA Translation: AAC31233.1 CP002685 Genomic DNA Translation: AEC07786.1 CP002685 Genomic DNA Translation: AEC07787.1 AY144457 mRNA Translation: AAN52167.1 AY649316 mRNA Translation: AAT69233.1 AK176562 mRNA Translation: BAD44325.1 |
PIRi | T02620 |
RefSeqi | NP_001031420.1, NM_001036343.1 [Q8H1M0-1] NP_180173.1, NM_128162.3 [Q8H1M0-1] |
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Protein-protein interaction databases
BioGRIDi | 2496, 1 interactor |
IntActi | Q8H1M0, 1 interactor |
Proteomic databases
PaxDbi | Q8H1M0 |
PRIDEi | Q8H1M0 |
ProteomicsDBi | 230873 [Q8H1M0-1] |
Genome annotation databases
EnsemblPlantsi | AT2G26030.1; AT2G26030.1; AT2G26030 [Q8H1M0-1] AT2G26030.3; AT2G26030.3; AT2G26030 [Q8H1M0-1] |
GeneIDi | 817144 |
Gramenei | AT2G26030.1; AT2G26030.1; AT2G26030 [Q8H1M0-1] AT2G26030.3; AT2G26030.3; AT2G26030 [Q8H1M0-1] |
KEGGi | ath:AT2G26030 |
Organism-specific databases
Araporti | AT2G26030 |
TAIRi | locus:2057422, AT2G26030 |
Phylogenomic databases
eggNOGi | ENOG502RYTW, Eukaryota |
HOGENOMi | CLU_010721_1_3_1 |
InParanoidi | Q8H1M0 |
PhylomeDBi | Q8H1M0 |
Miscellaneous databases
PROi | PR:Q8H1M0 |
Gene expression databases
ExpressionAtlasi | Q8H1M0, baseline and differential |
Family and domain databases
Gene3Di | 3.80.10.10, 1 hit |
InterProi | View protein in InterPro IPR036047, F-box-like_dom_sf IPR001810, F-box_dom IPR006566, FBD IPR013101, Leu-rich_rpt_2 IPR032675, LRR_dom_sf |
Pfami | View protein in Pfam PF00646, F-box, 1 hit PF08387, FBD, 1 hit PF07723, LRR_2, 1 hit |
SMARTi | View protein in SMART SM00579, FBD, 1 hit SM00256, FBOX, 1 hit |
SUPFAMi | SSF81383, SSF81383, 1 hit |
PROSITEi | View protein in PROSITE PS50181, FBOX, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | FDL16_ARATH | |
Accessioni | Q8H1M0Primary (citable) accession number: Q8H1M0 Secondary accession number(s): O80993, Q3EBT9 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | April 3, 2007 |
Last sequence update: | April 3, 2007 | |
Last modified: | October 7, 2020 | |
This is version 104 of the entry and version 2 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Plant Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
Reference proteomeDocuments
- Arabidopsis thaliana
Arabidopsis thaliana: entries and gene names