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Protein

Myb family transcription factor PHL4

Gene

PHL4

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Transcription factor involved in male gametophyte development.1 Publication

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi259 – 284H-T-H motifPROSITE-ProRule annotationAdd BLAST26

GO - Molecular functioni

  • DNA binding Source: UniProtKB-KW
  • DNA-binding transcription factor activity Source: TAIR

GO - Biological processi

  • pollen development Source: TAIR
  • regulation of transcription, DNA-templated Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Myb family transcription factor PHL4Curated
Alternative name(s):
Protein PHR1-LIKE 4Curated
Gene namesi
Name:PHL4Curated
Ordered Locus Names:At2g20400Imported
ORF Names:F11A3.5Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

AraportiAT2G20400
TAIRilocus:2038957 AT2G20400

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

Pathology & Biotechi

Disruption phenotypei

Separated male germ unit (MGU) with all nuclei separated from each other making a wide triangular figure.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004368611 – 397Myb family transcription factor PHL4Add BLAST397

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei387PhosphoserineBy similarity1

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDbiQ8GXC2

PTM databases

iPTMnetiQ8GXC2

Expressioni

Gene expression databases

ExpressionAtlasiQ8GXC2 baseline and differential

Interactioni

Protein-protein interaction databases

STRINGi3702.AT2G20400.1

Structurei

3D structure databases

ProteinModelPortaliQ8GXC2
SMRiQ8GXC2
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini228 – 288HTH myb-typePROSITE-ProRule annotationAdd BLAST61

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni319 – 339Coiled coilCuratedAdd BLAST21

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi332 – 337LHEQLECurated6

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi5 – 8Poly-AspSequence analysis4
Compositional biasi182 – 199Gln-richPROSITE-ProRule annotationAdd BLAST18
Compositional biasi216 – 225Asn-richPROSITE-ProRule annotation10
Compositional biasi226 – 230Poly-AlaSequence analysis5

Sequence similaritiesi

Belongs to the MYB-CC family.Curated

Keywords - Domaini

Coiled coil

Phylogenomic databases

eggNOGiENOG410JX42 Eukaryota
ENOG41104BE LUCA
HOGENOMiHOG000064669
InParanoidiQ8GXC2
OMAiRTMQLRI
OrthoDBiEOG09360EUY
PhylomeDBiQ8GXC2

Family and domain databases

InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR025756 Myb_CC_LHEQLE
IPR017930 Myb_dom
IPR006447 Myb_dom_plants
IPR001005 SANT/Myb
PfamiView protein in Pfam
PF14379 Myb_CC_LHEQLE, 1 hit
PF00249 Myb_DNA-binding, 1 hit
SUPFAMiSSF46689 SSF46689, 1 hit
TIGRFAMsiTIGR01557 myb_SHAQKYF, 1 hit
PROSITEiView protein in PROSITE
PS51294 HTH_MYB, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

Q8GXC2-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MIPNDDDDAN SMKNYPLNDD DANSMKNYPL NDDDANSMEN YPLRSIPTEL
60 70 80 90 100
SHTCSLIPPS LPNPSEAAAD MSFNSELNQI MARPCDMLPA NGGAVGHNPF
110 120 130 140 150
LEPGFNCPET TDWIPSPLPH IYFPSGSPNL IMEDGVIDEI HKQSDLPLWY
160 170 180 190 200
DDLITTDEDP LMSSILGDLL LDTNFNSASK VQQPSMQSQI QQPQAVLQQP
210 220 230 240 250
SSCVELRPLD RTVSSNSNNN SNSNNAAAAA KGRMRWTPEL HEVFVDAVNQ
260 270 280 290 300
LGGSNEATPK GVLKHMKVEG LTIFHVKSHL QKYRTAKYIP VPSEGSPEAR
310 320 330 340 350
LTPLEQITSD DTKRGIDITE TLRIQMEHQK KLHEQLESLR TMQLRIEEQG
360 370 380 390
KALLMMIEKQ NMGFGGPEQG EKTSAKTPEN GSEESESPRP KRPRNEE
Length:397
Mass (Da):44,112
Last modified:March 1, 2003 - v1
Checksum:iCF58A7929A66CA4D
GO

Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A1P8AYE3A0A1P8AYE3_ARATH
Myb-like HTH transcriptional regula...
At2g20400, F11A3.5, F11A3_5
398Annotation score:

Sequence cautioni

The sequence AAD21748 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC006569 Genomic DNA Translation: AAD21748.1 Sequence problems.
CP002685 Genomic DNA Translation: AEC07003.1
AK118313 mRNA Translation: BAC42929.1
BT006119 mRNA Translation: AAP04104.1
PIRiG84588
RefSeqiNP_179630.2, NM_127599.3
UniGeneiAt.43867

Genome annotation databases

EnsemblPlantsiAT2G20400.1; AT2G20400.1; AT2G20400
GeneIDi816559
GrameneiAT2G20400.1; AT2G20400.1; AT2G20400
KEGGiath:AT2G20400

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC006569 Genomic DNA Translation: AAD21748.1 Sequence problems.
CP002685 Genomic DNA Translation: AEC07003.1
AK118313 mRNA Translation: BAC42929.1
BT006119 mRNA Translation: AAP04104.1
PIRiG84588
RefSeqiNP_179630.2, NM_127599.3
UniGeneiAt.43867

3D structure databases

ProteinModelPortaliQ8GXC2
SMRiQ8GXC2
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT2G20400.1

PTM databases

iPTMnetiQ8GXC2

Proteomic databases

PaxDbiQ8GXC2

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G20400.1; AT2G20400.1; AT2G20400
GeneIDi816559
GrameneiAT2G20400.1; AT2G20400.1; AT2G20400
KEGGiath:AT2G20400

Organism-specific databases

AraportiAT2G20400
TAIRilocus:2038957 AT2G20400

Phylogenomic databases

eggNOGiENOG410JX42 Eukaryota
ENOG41104BE LUCA
HOGENOMiHOG000064669
InParanoidiQ8GXC2
OMAiRTMQLRI
OrthoDBiEOG09360EUY
PhylomeDBiQ8GXC2

Miscellaneous databases

PROiPR:Q8GXC2

Gene expression databases

ExpressionAtlasiQ8GXC2 baseline and differential

Family and domain databases

InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR025756 Myb_CC_LHEQLE
IPR017930 Myb_dom
IPR006447 Myb_dom_plants
IPR001005 SANT/Myb
PfamiView protein in Pfam
PF14379 Myb_CC_LHEQLE, 1 hit
PF00249 Myb_DNA-binding, 1 hit
SUPFAMiSSF46689 SSF46689, 1 hit
TIGRFAMsiTIGR01557 myb_SHAQKYF, 1 hit
PROSITEiView protein in PROSITE
PS51294 HTH_MYB, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiPHL4_ARATH
AccessioniPrimary (citable) accession number: Q8GXC2
Secondary accession number(s): Q9SK62
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 6, 2016
Last sequence update: March 1, 2003
Last modified: October 10, 2018
This is version 130 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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