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Entry version 112 (26 Feb 2020)
Sequence version 1 (01 Mar 2003)
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Protein

Cytochrome c-552

Gene

nrfA

Organism
Shewanella oneidensis (strain MR-1)
Status
Reviewed-Annotation score:

Annotation score:4 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process (PubMed:22382353). Has very low activity toward hydroxylamine (PubMed:22382353). Has even lower activity toward sulfite. Sulfite reductase activity is maximal at neutral pH (By similarity).By similarity1 Publication

<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

<p>This subsection of the 'Function' section provides information relevant to cofactors. A cofactor is any non-protein substance required for a protein to be catalytically active. Some cofactors are inorganic, such as the metal atoms zinc, iron, and copper in various oxidation states. Others, such as most vitamins, are organic.<p><a href='/help/cofactor' target='_top'>More...</a></p>Cofactori

Protein has several cofactor binding sites:

<p>This subsection of the 'Function' section describes biophysical and chemical properties, such as maximal absorption, kinetic parameters, pH dependence, redox potentials and temperature dependence.<p><a href='/help/biophysicochemical_properties' target='_top'>More...</a></p>Kineticsi

  1. KM=23 µM for nitrite1 Publication
  2. KM=8300 µM for nitrosamine1 Publication

    <p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section describes the metabolic pathway(s) associated with a protein.<p><a href='/help/pathway' target='_top'>More...</a></p>Pathwayi: nitrate reduction (assimilation)

    This protein is involved in the pathway nitrate reduction (assimilation), which is part of Nitrogen metabolism.UniRule annotation1 Publication
    View all proteins of this organism that are known to be involved in the pathway nitrate reduction (assimilation) and in Nitrogen metabolism.

    Sites

    Feature keyPosition(s)DescriptionActionsGraphical viewLength
    <p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section indicates at which position the protein binds a given metal ion. The nature of the metal is indicated in the 'Description' field.<p><a href='/help/metal' target='_top'>More...</a></p>Metal bindingi87Iron (heme 3 axial ligand)UniRule annotationCombined sources1
    <p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the interaction between a single amino acid and another chemical entity. Priority is given to the annotation of physiological ligands.<p><a href='/help/binding' target='_top'>More...</a></p>Binding sitei115Heme 1 (covalent)UniRule annotationCombined sources1
    Binding sitei118Heme 1 (covalent)UniRule annotationCurated1
    Metal bindingi119Iron (heme 1 axial ligand)UniRule annotationCombined sources1
    Binding sitei153Heme 2 (covalent)UniRule annotation1
    Binding sitei156Heme 2 (covalent)UniRule annotation1
    Metal bindingi157Iron (heme 2 axial ligand)UniRule annotationCombined sources1
    Binding sitei195Heme 3 (covalent)UniRule annotationCombined sources1
    Binding sitei198Heme 3 (covalent)UniRule annotationCombined sources1
    Metal bindingi199Iron (heme 3 axial ligand)UniRule annotationCombined sources1
    Metal bindingi201CalciumUniRule annotationCombined sources1
    Metal bindingi202Calcium; via carbonyl oxygenUniRule annotationCombined sources1
    Binding sitei202SubstrateUniRule annotation1
    Metal bindingi250Calcium; via carbonyl oxygenUniRule annotationCombined sources1
    Metal bindingi252CalciumUniRule annotationCombined sources1
    Binding sitei253SubstrateUniRule annotation1
    Metal bindingi264Iron (heme 5 axial ligand)UniRule annotationCombined sources1
    Binding sitei271Heme 4 (covalent)UniRule annotationCombined sources1
    Binding sitei274Heme 4 (covalent)UniRule annotation1
    Metal bindingi275Iron (heme 4 axial ligand)UniRule annotationCombined sources1
    Metal bindingi290Iron (heme 2 axial ligand)UniRule annotationCombined sources1
    Binding sitei303Heme 5 (covalent)UniRule annotationCombined sources1
    Binding sitei306Heme 5 (covalent)UniRule annotation1
    Metal bindingi307Iron (heme 5 axial ligand)UniRule annotationCombined sources1
    Metal bindingi382Iron (heme 4 axial ligand)UniRule annotationCombined sources1

    <p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

    GO - Biological processi

    <p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

    Molecular functionOxidoreductase
    Biological processElectron transport, Transport
    LigandCalcium, Heme, Iron, Metal-binding

    Enzyme and pathway databases

    BioCyc Collection of Pathway/Genome Databases

    More...
    BioCyci
    SONE211586:G1GMP-3689-MONOMER

    BRENDA Comprehensive Enzyme Information System

    More...
    BRENDAi
    1.7.2.2 5706

    UniPathway: a resource for the exploration and annotation of metabolic pathways

    More...
    UniPathwayi
    UPA00653

    <p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

    <p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
    Recommended name:
    Cytochrome c-552UniRule annotation (EC:1.7.2.2UniRule annotation1 Publication)
    Alternative name(s):
    Ammonia-forming cytochrome c nitrite reductaseUniRule annotation
    Short name:
    Cytochrome c nitrite reductase1 PublicationUniRule annotation
    <p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
    Name:nrfAUniRule annotation
    Ordered Locus Names:SO_3980
    <p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiShewanella oneidensis (strain MR-1)
    <p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri211586 [NCBI]
    <p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
    <p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
    • UP000008186 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

    <p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

    GO - Cellular componenti

    Keywords - Cellular componenti

    Periplasm

    <p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

    Molecule processing

    Feature keyPosition(s)DescriptionActionsGraphical viewLength
    <p>This subsection of the 'PTM / Processing' section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 27UniRule annotationAdd BLAST27
    <p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_000026897528 – 467Cytochrome c-552Add BLAST440

    Proteomic databases

    PaxDb, a database of protein abundance averages across all three domains of life

    More...
    PaxDbi
    Q8EAC7

    PRoteomics IDEntifications database

    More...
    PRIDEi
    Q8EAC7

    <p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

    <p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

    Homodimer.

    1 Publication

    Protein-protein interaction databases

    STRING: functional protein association networks

    More...
    STRINGi
    211586.SO_3980

    <p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

    Secondary structure

    1467
    Legend: HelixTurnBeta strandPDB Structure known for this area
    Show more details

    3D structure databases

    SWISS-MODEL Repository - a database of annotated 3D protein structure models

    More...
    SMRi
    Q8EAC7

    Database of comparative protein structure models

    More...
    ModBasei
    Search...

    Protein Data Bank in Europe - Knowledge Base

    More...
    PDBe-KBi
    Search...

    <p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

    <p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

    Belongs to the cytochrome c-552 family.UniRule annotation

    Keywords - Domaini

    Signal

    Phylogenomic databases

    evolutionary genealogy of genes: Non-supervised Orthologous Groups

    More...
    eggNOGi
    ENOG4105EAU Bacteria
    COG3303 LUCA

    The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

    More...
    HOGENOMi
    CLU_035040_1_0_6

    KEGG Orthology (KO)

    More...
    KOi
    K03385

    Identification of Orthologs from Complete Genome Data

    More...
    OMAi
    EMVILWA

    Database of Orthologous Groups

    More...
    OrthoDBi
    738283at2

    Database for complete collections of gene phylogenies

    More...
    PhylomeDBi
    Q8EAC7

    Family and domain databases

    HAMAP database of protein families

    More...
    HAMAPi
    MF_01182 Cytochrom_C552, 1 hit

    Integrated resource of protein families, domains and functional sites

    More...
    InterProi
    View protein in InterPro
    IPR003321 Cyt_c552
    IPR017570 Cyt_c_NO2Rdtase_formate-dep
    IPR011031 Multihaem_cyt
    IPR036280 Multihaem_cyt_sf

    The PANTHER Classification System

    More...
    PANTHERi
    PTHR30633 PTHR30633, 1 hit

    Pfam protein domain database

    More...
    Pfami
    View protein in Pfam
    PF02335 Cytochrom_C552, 1 hit

    PIRSF; a whole-protein classification database

    More...
    PIRSFi
    PIRSF000243 Cyt_c552, 1 hit

    Superfamily database of structural and functional annotation

    More...
    SUPFAMi
    SSF48695 SSF48695, 1 hit

    TIGRFAMs; a protein family database

    More...
    TIGRFAMsi
    TIGR03152 cyto_c552_HCOOH, 1 hit

    PROSITE; a protein domain and family database

    More...
    PROSITEi
    View protein in PROSITE
    PS51008 MULTIHEME_CYTC, 1 hit

    <p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

    <p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

    <p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

    Q8EAC7-1 [UniParc]FASTAAdd to basket
    « Hide
            10         20         30         40         50
    MMKKMTGKTF ALSALVAASF MAAGAMASDK TEPRNEVYKD KFKNQYNSWH
    60 70 80 90 100
    DTAKSEELVD ALEQDPNMVI LWAGYAFAKD YKAPRGHMYA VTDVRNTLRT
    110 120 130 140 150
    GAPKNAEDGP LPMACWSCKS PDVPRLIEEQ GEDGYFKGKW AKGGPEVTNT
    160 170 180 190 200
    IGCSDCHEKG SPKLRISRPY VDRALDAIGT PFSKASKQDK ESMVCAQCHV
    210 220 230 240 250
    EYYFEKKEDK KGFVKFPWDM GVTVDQMEVY YDGIEFSDWT HALSKTPMLK
    260 270 280 290 300
    AQHPEYETWK MGIHGKNNVS CVDCHMPKVT SPEGKKFTDH KVGNPFDRFE
    310 320 330 340 350
    ETCATCHSQT KEFLVGVTNE RKAKVKEMKL KAEEQLVKAH FEAAKAWELG
    360 370 380 390 400
    ATEAEMKPIL TDIRHAQWRW DLAIASHGVA AHAPEEALRV LGTSVNKAAD
    410 420 430 440 450
    ARVKLAQLLA KKGLTDPVAI PDISTKAKAQ AVLGMDMEKM NAEKEAFKKD
    460
    MLPKWDAEAK KREATYK
    Length:467
    Mass (Da):52,334
    Last modified:March 1, 2003 - v1
    <p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i4BC976E90CDC48E0
    GO

    Sequence databases

    Select the link destinations:

    EMBL nucleotide sequence database

    More...
    EMBLi

    GenBank nucleotide sequence database

    More...
    GenBanki

    DNA Data Bank of Japan; a nucleotide sequence database

    More...
    DDBJi
    Links Updated
    AE014299 Genomic DNA Translation: AAN56954.1

    NCBI Reference Sequences

    More...
    RefSeqi
    NP_719510.1, NC_004347.2
    WP_011073711.1, NC_004347.2

    Genome annotation databases

    Ensembl bacterial and archaeal genome annotation project

    More...
    EnsemblBacteriai
    AAN56954; AAN56954; SO_3980

    Database of genes from NCBI RefSeq genomes

    More...
    GeneIDi
    1171612

    KEGG: Kyoto Encyclopedia of Genes and Genomes

    More...
    KEGGi
    son:SO_3980

    Pathosystems Resource Integration Center (PATRIC)

    More...
    PATRICi
    fig|211586.12.peg.3862

    <p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

    <p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBLi
    GenBanki
    DDBJi
    Links Updated
    AE014299 Genomic DNA Translation: AAN56954.1
    RefSeqiNP_719510.1, NC_004347.2
    WP_011073711.1, NC_004347.2

    3D structure databases

    Select the link destinations:

    Protein Data Bank Europe

    More...
    PDBei

    Protein Data Bank RCSB

    More...
    RCSB PDBi

    Protein Data Bank Japan

    More...
    PDBji
    Links Updated
    PDB entryMethodResolution (Å)ChainPositionsPDBsum
    3UBRX-ray2.59A/B28-466[»]
    SMRiQ8EAC7
    ModBaseiSearch...
    PDBe-KBiSearch...

    Protein-protein interaction databases

    STRINGi211586.SO_3980

    Proteomic databases

    PaxDbiQ8EAC7
    PRIDEiQ8EAC7

    Genome annotation databases

    EnsemblBacteriaiAAN56954; AAN56954; SO_3980
    GeneIDi1171612
    KEGGison:SO_3980
    PATRICifig|211586.12.peg.3862

    Phylogenomic databases

    eggNOGiENOG4105EAU Bacteria
    COG3303 LUCA
    HOGENOMiCLU_035040_1_0_6
    KOiK03385
    OMAiEMVILWA
    OrthoDBi738283at2
    PhylomeDBiQ8EAC7

    Enzyme and pathway databases

    UniPathwayiUPA00653
    BioCyciSONE211586:G1GMP-3689-MONOMER
    BRENDAi1.7.2.2 5706

    Family and domain databases

    HAMAPiMF_01182 Cytochrom_C552, 1 hit
    InterProiView protein in InterPro
    IPR003321 Cyt_c552
    IPR017570 Cyt_c_NO2Rdtase_formate-dep
    IPR011031 Multihaem_cyt
    IPR036280 Multihaem_cyt_sf
    PANTHERiPTHR30633 PTHR30633, 1 hit
    PfamiView protein in Pfam
    PF02335 Cytochrom_C552, 1 hit
    PIRSFiPIRSF000243 Cyt_c552, 1 hit
    SUPFAMiSSF48695 SSF48695, 1 hit
    TIGRFAMsiTIGR03152 cyto_c552_HCOOH, 1 hit
    PROSITEiView protein in PROSITE
    PS51008 MULTIHEME_CYTC, 1 hit

    ProtoNet; Automatic hierarchical classification of proteins

    More...
    ProtoNeti
    Search...

    MobiDB: a database of protein disorder and mobility annotations

    More...
    MobiDBi
    Search...

    <p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

    <p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiNRFA_SHEON
    <p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q8EAC7
    <p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 12, 2006
    Last sequence update: March 1, 2003
    Last modified: February 26, 2020
    This is version 112 of the entry and version 1 of the sequence. See complete history.
    <p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    <p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

    Keywords - Technical termi

    3D-structure, Reference proteome

    Documents

    1. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    2. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    3. SIMILARITY comments
      Index of protein domains and families
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