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Entry version 130 (02 Jun 2021)
Sequence version 2 (20 May 2008)
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Protein

Leucine-rich repeat-containing protein 9

Gene

Lrrc9

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Leucine-rich repeat-containing protein 9
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Lrrc9
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMus musculus (Mouse)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10090 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000589 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 12

Organism-specific databases

Mouse genome database (MGD) from Mouse Genome Informatics (MGI)

More...
MGIi
MGI:1925507, Lrrc9

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003376771 – 1456Leucine-rich repeat-containing protein 9Add BLAST1456

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei525PhosphotyrosineCombined sources1

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q8CDN9

PRoteomics IDEntifications database

More...
PRIDEi
Q8CDN9

ProteomicsDB: a multi-organism proteome resource

More...
ProteomicsDBi
292114 [Q8CDN9-1]
292115 [Q8CDN9-2]

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
Q8CDN9

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...
PhosphoSitePlusi
Q8CDN9

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSMUSG00000021090, Expressed in spermatid and 75 other tissues

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q8CDN9, baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q8CDN9, MM

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
10090.ENSMUSP00000124394

Miscellaneous databases

RNAct, Protein-RNA interaction predictions for model organisms.

More...
RNActi
Q8CDN9, protein

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati53 – 78LRR 1Add BLAST26
Repeati97 – 119LRR 2Add BLAST23
Repeati120 – 141LRR 3Add BLAST22
Repeati142 – 164LRR 4Add BLAST23
Repeati166 – 188LRR 5Add BLAST23
Repeati190 – 212LRR 6Add BLAST23
Repeati224 – 248LRR 7Add BLAST25
Repeati264 – 287LRR 8Add BLAST24
Repeati339 – 362LRR 9Add BLAST24
Repeati661 – 683LRR 10Add BLAST23
Repeati684 – 705LRR 11Add BLAST22
Repeati706 – 727LRR 12Add BLAST22
Repeati729 – 748LRR 13Add BLAST20
Repeati749 – 772LRR 14Add BLAST24
Repeati776 – 802LRR 15Add BLAST27
Repeati806 – 833LRR 16Add BLAST28
Repeati876 – 898LRR 17Add BLAST23
Repeati899 – 920LRR 18Add BLAST22
Repeati921 – 942LRR 19Add BLAST22
Repeati943 – 965LRR 20Add BLAST23
Repeati967 – 991LRR 21Add BLAST25
Repeati993 – 1010LRR 22Add BLAST18
Repeati1013 – 1037LRR 23Add BLAST25
Repeati1082 – 1105LRR 24Add BLAST24
Repeati1106 – 1128LRR 25Add BLAST23
Repeati1129 – 1151LRR 26Add BLAST23
Repeati1191 – 1214LRR 27Add BLAST24
Repeati1215 – 1237LRR 28Add BLAST23
Repeati1238 – 1260LRR 29Add BLAST23
Repeati1262 – 1283LRR 30Add BLAST22
Repeati1284 – 1307LRR 31Add BLAST24
Repeati1309 – 1335LRR 32Add BLAST27

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni305 – 325DisorderedSequence analysisAdd BLAST21

Keywords - Domaini

Leucine-rich repeat, Repeat

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG0531, Eukaryota

Ensembl GeneTree

More...
GeneTreei
ENSGT00940000158583

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_002627_0_0_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q8CDN9

Database of Orthologous Groups

More...
OrthoDBi
994469at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q8CDN9

TreeFam database of animal gene trees

More...
TreeFami
TF329042

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.80.10.10, 8 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR001611, Leu-rich_rpt
IPR003591, Leu-rich_rpt_typical-subtyp
IPR032675, LRR_dom_sf
IPR003603, U2A'_phosphoprotein32A_C

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF13855, LRR_8, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00369, LRR_TYP, 12 hits
SM00446, LRRcap, 3 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51450, LRR, 25 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (2+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 2 <p>This subsection of the 'Sequence' section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 2 described isoforms and 3 potential isoforms that are computationally mapped.Show allAlign All

Isoform 1 (identifier: Q8CDN9-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the <div> <p><b>What is the canonical sequence?</b><p><a href='/help/canonical_and_isoforms' target='_top'>More...</a></p>canonicali sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MIESENLNRG EIIKELCLCN GLTYEIVGQE GSDTSKLEMF FSGYPRIVGL
60 70 80 90 100
SLFHNLSSLT IVAQDIREIS GLETCLQLKE LWIAECCIEK IEGLQGCRNL
110 120 130 140 150
EKLYLYYNKI SKIENLEKLI KLEVLWLNHN MIKNIEGLQT LKNLKDLNLA
160 170 180 190 200
GNLVSSIGRC LDPNEQLEKL NLSGNQITSF KDLTNLTKLT RLKDLCLNDP
210 220 230 240 250
QYKSNPVCQL CNYSTHVLYH LPSLQRLDTF DVSAKQIKEL ADSTAMKKIM
260 270 280 290 300
YYNMRIKTVQ RHLNEELEKL NDRKCKLQKL PEERIKLFNF AKKTLERELA
310 320 330 340 350
ELKISSKGQS DTTPEAEKPR NSEVVTQESV LQQKILTKLS ALDDRVTFWN
360 370 380 390 400
KKLHEIEAIY RTEVKQKKKT HGLLTPFLLT ELETVGNIHF EEGTQADDWF
410 420 430 440 450
NSCCELILSR FCTWDFRAYG ITGVKVKRVI KVNNRILRLK FEEKFQKCLD
460 470 480 490 500
LEDTQDPDYR KMLECLFYVF DPEVTVKKKH LLQILERGFK DSDTSKPSLK
510 520 530 540 550
KEAVTLVNSL SMCECPRIEF LQQKYKEEKK GPSESELYRH GTILIAKVFL
560 570 580 590 600
GQSIQARDQE PINKANYPMV NSVFVPQRHV LRQRTCDCGY RQYKWFVFDH
610 620 630 640 650
DLVLPEYIVE FEYTTVVKVH SLFSTSNNVI LEEGKKYSEG LVFSQDLKFD
660 670 680 690 700
DEVLKMEPRI KPRPKLISLD EKTIISLAKT NIYSHIVNLN LHGNSLSKLR
710 720 730 740 750
DLAKLTGLRK LNISFNEFTC LDDVYHLYNL EYLDASHNHV ITLEGFRGLM
760 770 780 790 800
KLKHLDLSWN QLKKTGEEIN VLCKHTTSLL TLDIQHNPWQ KPATLRLSVI
810 820 830 840 850
GRLKTLTHLD GLVISEEETR AALKFISGTK ITQLTLLQHS SSKEERPRML
860 870 880 890 900
STWPSAKILT QISKLGPHFH LTGNWYSKIT ALNLDGQHLF EITNLEKLEN
910 920 930 940 950
LKWASFSNNN LSKMEGLESC VNLEELTLDG NCISKIEGIT RLTKLSRLSM
960 970 980 990 1000
NNNLLTGLEK HTFDNLLHLH SLSLENNRIT SLSALQKTFT LIELYISNNY
1010 1020 1030 1040 1050
IAVNQEIYNL KGLCNLVILD MYGNIIIWNQ ENYRFFVIFH LPELKALDGV
1060 1070 1080 1090 1100
SIETSETETA KDLFGGRLTS DMIAERQGHS NFIQMQELNW TSSAIRTVDL
1110 1120 1130 1140 1150
IPVDHFRNVS NVNLQNNNLT SFSGLIYLPN VKVLCLNYNH IESIMPRLKP
1160 1170 1180 1190 1200
QTHLSSRQLL YQKVPSSGYG QQGTSKLNRD SVGSENLPPI MQSLEVLHLG
1210 1220 1230 1240 1250
YNGICNLVQL QLNRLRNLKF LFLQGNEISQ VEGLDNLIVL QELVVDHNRI
1260 1270 1280 1290 1300
RAFNDTAFSK PSSLLMLHLE ENRLRELSKL QSLVKLEKLF LGYNKIQDIT
1310 1320 1330 1340 1350
ELEKLDVIPS LRELTVYGNP ICRKMVHRHV LIFRLPNLQM LDGIPINSDD
1360 1370 1380 1390 1400
RAKAEFHFSE LQAKKSSIIQ NNLPTSKSSL PSHLQTPLPC KFVPVTNSTD
1410 1420 1430 1440 1450
GGSFCHVKAS PIKITNVLLP AGFSRFLGPD FTLTPEVEGI FTKSFRENEK

TNKQQQ
Length:1,456
Mass (Da):167,302
Last modified:May 20, 2008 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iC5B99D6C9CBDAE41
GO
Isoform 2 (identifier: Q8CDN9-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1133-1154: VLCLNYNHIESIMPRLKPQTHL → ARGCRAIFALKDISTSFNLHLH
     1155-1456: Missing.

Show »
Length:1,154
Mass (Da):133,041
Checksum:iB7F0F4D9C4F72C42
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 3 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
E9PUL2E9PUL2_MOUSE
Leucine-rich repeat-containing prot...
Lrrc9
1,155Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A1Y7VLD2A0A1Y7VLD2_MOUSE
Leucine-rich repeat-containing prot...
Lrrc9
1,324Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A1Y7VNX5A0A1Y7VNX5_MOUSE
Leucine-rich repeat-containing prot...
Lrrc9
294Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

<p>This subsection of the 'Sequence' section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence BAB31790 differs from that shown. Reason: Frameshift.Curated
The sequence BAC26622 differs from that shown. Reason: Frameshift.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti173S → F in BAC30215 (PubMed:16141072).Curated1
Sequence conflicti293K → R in BAC30215 (PubMed:16141072).Curated1
Sequence conflicti312T → K in BAC30215 (PubMed:16141072).Curated1
Sequence conflicti364V → A in BAC30215 (PubMed:16141072).Curated1
Sequence conflicti458D → ES in BAB31790 (PubMed:16141072).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_0339921133 – 1154VLCLN…PQTHL → ARGCRAIFALKDISTSFNLH LH in isoform 2. 1 PublicationAdd BLAST22
Alternative sequenceiVSP_0339931155 – 1456Missing in isoform 2. 1 PublicationAdd BLAST302

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AK019545 mRNA Translation: BAB31790.1 Frameshift.
AK029802 mRNA Translation: BAC26622.1 Frameshift.
AK039037 mRNA Translation: BAC30215.2

The Consensus CDS (CCDS) project

More...
CCDSi
CCDS49085.1 [Q8CDN9-1]

NCBI Reference Sequences

More...
RefSeqi
NP_001136200.1, NM_001142728.1 [Q8CDN9-1]
NP_001136201.1, NM_001142729.1
NP_084346.2, NM_030070.3
XP_017170735.1, XM_017315246.1 [Q8CDN9-1]

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENSMUST00000162159; ENSMUSP00000124394; ENSMUSG00000021090 [Q8CDN9-1]

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
78257

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
mmu:78257

UCSC genome browser

More...
UCSCi
uc007nvn.2, mouse [Q8CDN9-1]

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK019545 mRNA Translation: BAB31790.1 Frameshift.
AK029802 mRNA Translation: BAC26622.1 Frameshift.
AK039037 mRNA Translation: BAC30215.2
CCDSiCCDS49085.1 [Q8CDN9-1]
RefSeqiNP_001136200.1, NM_001142728.1 [Q8CDN9-1]
NP_001136201.1, NM_001142729.1
NP_084346.2, NM_030070.3
XP_017170735.1, XM_017315246.1 [Q8CDN9-1]

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000124394

PTM databases

iPTMnetiQ8CDN9
PhosphoSitePlusiQ8CDN9

Proteomic databases

PaxDbiQ8CDN9
PRIDEiQ8CDN9
ProteomicsDBi292114 [Q8CDN9-1]
292115 [Q8CDN9-2]

Protocols and materials databases

Antibodypedia a portal for validated antibodies

More...
Antibodypediai
72204, 6 antibodies

The DNASU plasmid repository

More...
DNASUi
78257

Genome annotation databases

EnsembliENSMUST00000162159; ENSMUSP00000124394; ENSMUSG00000021090 [Q8CDN9-1]
GeneIDi78257
KEGGimmu:78257
UCSCiuc007nvn.2, mouse [Q8CDN9-1]

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
341883
MGIiMGI:1925507, Lrrc9

Phylogenomic databases

eggNOGiKOG0531, Eukaryota
GeneTreeiENSGT00940000158583
HOGENOMiCLU_002627_0_0_1
InParanoidiQ8CDN9
OrthoDBi994469at2759
PhylomeDBiQ8CDN9
TreeFamiTF329042

Miscellaneous databases

BioGRID ORCS database of CRISPR phenotype screens

More...
BioGRID-ORCSi
78257, 0 hits in 52 CRISPR screens

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

More...
ChiTaRSi
Lrrc9, mouse

Protein Ontology

More...
PROi
PR:Q8CDN9
RNActiQ8CDN9, protein

The Stanford Online Universal Resource for Clones and ESTs

More...
SOURCEi
Search...

Gene expression databases

BgeeiENSMUSG00000021090, Expressed in spermatid and 75 other tissues
ExpressionAtlasiQ8CDN9, baseline and differential
GenevisibleiQ8CDN9, MM

Family and domain databases

Gene3Di3.80.10.10, 8 hits
InterProiView protein in InterPro
IPR001611, Leu-rich_rpt
IPR003591, Leu-rich_rpt_typical-subtyp
IPR032675, LRR_dom_sf
IPR003603, U2A'_phosphoprotein32A_C
PfamiView protein in Pfam
PF13855, LRR_8, 1 hit
SMARTiView protein in SMART
SM00369, LRR_TYP, 12 hits
SM00446, LRRcap, 3 hits
PROSITEiView protein in PROSITE
PS51450, LRR, 25 hits

MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiLRRC9_MOUSE
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q8CDN9
Secondary accession number(s): Q8CAD3, Q9D2J8
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 20, 2008
Last sequence update: May 20, 2008
Last modified: June 2, 2021
This is version 130 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
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