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Entry version 116 (11 Dec 2019)
Sequence version 2 (11 Jan 2011)
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Protein

PHD finger protein 20-like protein 1

Gene

Phf20l1

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score:

Annotation score:4 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section specifies the position(s) and type(s) of zinc fingers within the protein.<p><a href='/help/zn_fing' target='_top'>More...</a></p>Zinc fingeri681 – 729PHD-typeAdd BLAST49

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

LigandMetal-binding, Zinc

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
PHD finger protein 20-like protein 1
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Phf20l1
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMus musculus (Mouse)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10090 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000589 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 15

Organism-specific databases

Mouse genome database (MGD) from Mouse Genome Informatics (MGI)

More...
MGIi
MGI:2444412 Phf20l1

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003360021 – 1013PHD finger protein 20-like protein 1Add BLAST1013

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm_processing_section">PTM / Processing</a> section describes <strong>covalent linkages</strong> of various types formed <strong>between two proteins (interchain cross-links)</strong> or <strong>between two parts of the same protein (intrachain cross-links)</strong>, except the disulfide bonds that are annotated in the <a href="http://www.uniprot.org/manual/disulfid">'Disulfide bond'</a> subsection.<p><a href='/help/crosslnk' target='_top'>More...</a></p>Cross-linki75Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity
Cross-linki79Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity
<p>This subsection of the ‘PTM / Processing’ section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei368PhosphoserineCombined sources1
Modified residuei432PhosphoserineBy similarity1
Cross-linki530Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity
Modified residuei905N6-acetyllysineBy similarity1

Keywords - PTMi

Acetylation, Isopeptide bond, Phosphoprotein, Ubl conjugation

Proteomic databases

Encyclopedia of Proteome Dynamics

More...
EPDi
Q8CCJ9

jPOST - Japan Proteome Standard Repository/Database

More...
jPOSTi
Q8CCJ9

MaxQB - The MaxQuant DataBase

More...
MaxQBi
Q8CCJ9

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q8CCJ9

PeptideAtlas

More...
PeptideAtlasi
Q8CCJ9

PRoteomics IDEntifications database

More...
PRIDEi
Q8CCJ9

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
Q8CCJ9

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...
PhosphoSitePlusi
Q8CCJ9

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSMUSG00000072501 Expressed in 274 organ(s), highest expression level in cumulus cell

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q8CCJ9 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q8CCJ9 MM

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

More...
BioGridi
232090, 2 interactors

STRING: functional protein association networks

More...
STRINGi
10090.ENSMUSP00000035682

Miscellaneous databases

RNAct, Protein-RNA interaction predictions for model organisms.

More...
RNActi
Q8CCJ9 protein

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q8CCJ9

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini11 – 71Tudor 1Add BLAST61
Domaini85 – 141Tudor 2Add BLAST57

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi530 – 579Lys-richAdd BLAST50

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri681 – 729PHD-typeAdd BLAST49

Keywords - Domaini

Repeat, Zinc-finger

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG1844 Eukaryota
ENOG410YHG2 LUCA

Ensembl GeneTree

More...
GeneTreei
ENSGT00940000156215

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q8CCJ9

KEGG Orthology (KO)

More...
KOi
K18402

Identification of Orthologs from Complete Genome Data

More...
OMAi
QKPGASW

Database of Orthologous Groups

More...
OrthoDBi
147824at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q8CCJ9

TreeFam database of animal gene trees

More...
TreeFami
TF106475

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.30.40.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR014002 Agenet_dom_plant
IPR022255 DUF3776
IPR040477 KDM4_Tudor_2
IPR004092 Mbt
IPR002999 Tudor
IPR019786 Zinc_finger_PHD-type_CS
IPR011011 Znf_FYVE_PHD
IPR013083 Znf_RING/FYVE/PHD

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF12618 DUF3776, 1 hit
PF02820 MBT, 1 hit
PF18104 Tudor_2, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00743 Agenet, 2 hits
SM00333 TUDOR, 2 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF57903 SSF57903, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS01359 ZF_PHD_1, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (8+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 8 <p>This subsection of the ‘Sequence’ section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 8 described isoforms and 2 potential isoforms that are computationally mapped.Show allAlign All

Isoform 6 (identifier: Q8CCJ9-6) [UniParc]FASTAAdd to basket

This isoform has been chosen as the <div> <p><b>What is the canonical sequence?</b><p><a href='/help/canonical_and_isoforms' target='_top'>More...</a></p>canonicali sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MSKKPPNRPG ITFEIGARLE ALDYLQKWYP SRIEKIDYEE GKMLVHFERW
60 70 80 90 100
SHRYDEWIYW DSNRLRPLER PALRKEGLKD EEELFDFKAG EEVLARWTDC
110 120 130 140 150
RYYPAKIEAI NKEGTFTVQF YDGVIRCLKR MHIKAMPEDA KGQVKSQHPL
160 170 180 190 200
SWCCPIDPAG SCNQSMGSED WIALVKAAAA AAAKNKTGTK PRASANSNKE
210 220 230 240 250
KERDGGKWFK LPSKKAETST CIVTAEIEKK EELPTSSETF GLHIDTVPKI
260 270 280 290 300
VFPQPESTLT NKRKNNQGNS FQAKRARLNK ITGLLASKAV GVDGAERKED
310 320 330 340 350
CSATAPVLEQ AISPKPQSQK KNEAVISSSA NTQKPALLSS TLSSGKARSK
360 370 380 390 400
KCKHESGESS GCIKTPKSPL APELIQAKDL TLVSQLSSVI NKTSSPQPVN
410 420 430 440 450
PPRPCKHSER RRRSQRLATL PMPDDSLEKL SSSSSATDGK AFSISSQNQQ
460 470 480 490 500
QSSVPEVPAI AYVPLQKLGP CLPLDLSCGS EVTGSRTPHP SYHGGECPRE
510 520 530 540 550
EKEETPLFAN PTSKVVSDVK GAAAATGISK TEKKVKLEEK TSTAFGKRKE
560 570 580 590 600
KDKEKKEKRD KDHYKPKQKK KKKKKKKSKQ HDYSDYEDSS LDFLERCSSP
610 620 630 640 650
LTRSSGSSLA PRSTFTEKTT TYQYPRAILS VDLSGENLSD VEFLDDSSTE
660 670 680 690 700
SLLLSGDEYN QDFDSTNFEE SQDEDDALNE IVRCICELDE ENGFMIQCEE
710 720 730 740 750
CLCWQHSVCM GLLEDSIPEQ YICYICRDPP GQRWSAKYRY DKEWLNNGRM
760 770 780 790 800
YGLSFLKENY SHLNAKKIVS THHLLADVYG VTEVLHGLQL KIGILKNKHH
810 820 830 840 850
PDLHLWAYSG KRKDQDQAVA EAERKITPQD RANSEGKECV QNHKEPALRM
860 870 880 890 900
EETYITSEHS YQKPQSFSQD CQSLTDPGSS DDDDASSFEE DGELRVPDKS
910 920 930 940 950
HLLYKNRGVS EKNPASGNKV FVYNDKKGTE GPGDSHLQWQ LNLLTHIENV
960 970 980 990 1000
QNEVTSRMDL IEKEVDVLES WLDFTGELEP PDPLARLPQL KRHLKQLLLD
1010
VGKVQQIATL CSV
Length:1,013
Mass (Da):113,860
Last modified:January 11, 2011 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iDC9496CFD267823F
GO
Isoform 1 (identifier: Q8CCJ9-1) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     143-143: Q → QFLFQ
     547-550: KRKE → MDRK
     551-1013: Missing.

Show »
Length:554
Mass (Da):61,189
Checksum:i4B2A9B4210B0C75A
GO
Isoform 2 (identifier: Q8CCJ9-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     311-311: A → V
     312-1013: Missing.

Show »
Length:311
Mass (Da):35,252
Checksum:iB1CD548B4DCF6804
GO
Isoform 3 (identifier: Q8CCJ9-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     547-550: KRKE → MDRK
     551-1013: Missing.

Show »
Length:550
Mass (Da):60,653
Checksum:i20A2A0A0D7CA0837
GO
Isoform 4 (identifier: Q8CCJ9-4) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     732-740: QRWSAKYRY → EALRPVWVV
     741-1013: Missing.

Show »
Length:740
Mass (Da):82,658
Checksum:iA2A5A58250032F60
GO
Isoform 5 (identifier: Q8CCJ9-5) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     86-88: DFK → LFE
     89-1013: Missing.

Show »
Length:88
Mass (Da):10,887
Checksum:i404C6AD319624AB5
GO
Isoform 7 (identifier: Q8CCJ9-7) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-749: Missing.

Show »
Length:264
Mass (Da):29,917
Checksum:i31AB1FD1ABDF4F1F
GO
Isoform 8 (identifier: Q8CCJ9-8) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-694: Missing.

Show »
Length:319
Mass (Da):36,559
Checksum:iD9D7D756274691E5
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A2R8VHV1A0A2R8VHV1_MOUSE
PHD finger protein 20-like protein ...
Phf20l1
987Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A2R8VKH6A0A2R8VKH6_MOUSE
PHD finger protein 20-like protein ...
Phf20l1
567Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence BAC30733 differs from that shown. Reason: Erroneous initiation. Truncated N-terminus.Curated
The sequence BAC32830 differs from that shown. Reason: Erroneous initiation. Truncated N-terminus.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti95A → G in BAC32946 (PubMed:15489334).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_0404091 – 749Missing in isoform 7. 1 PublicationAdd BLAST749
Alternative sequenceiVSP_0404101 – 694Missing in isoform 8. 1 PublicationAdd BLAST694
Alternative sequenceiVSP_03378586 – 88DFK → LFE in isoform 5. 1 Publication3
Alternative sequenceiVSP_03378689 – 1013Missing in isoform 5. 1 PublicationAdd BLAST925
Alternative sequenceiVSP_040411143Q → QFLFQ in isoform 1. 1 Publication1
Alternative sequenceiVSP_033788311A → V in isoform 2. 1 Publication1
Alternative sequenceiVSP_033789312 – 1013Missing in isoform 2. 1 PublicationAdd BLAST702
Alternative sequenceiVSP_040412547 – 550KRKE → MDRK in isoform 1 and isoform 3. 2 Publications4
Alternative sequenceiVSP_040413551 – 1013Missing in isoform 1 and isoform 3. 2 PublicationsAdd BLAST463
Alternative sequenceiVSP_033790732 – 740QRWSAKYRY → EALRPVWVV in isoform 4. 1 Publication9
Alternative sequenceiVSP_040414741 – 1013Missing in isoform 4. 1 PublicationAdd BLAST273

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AK032638 mRNA Translation: BAC27964.1
AK040888 mRNA Translation: BAC30733.1 Different initiation.
AK046670 mRNA Translation: BAC32830.1 Different initiation.
AK047044 mRNA Translation: BAC32946.1
AK053606 mRNA Translation: BAC35444.1
BC052212 mRNA Translation: AAH52212.1
BC145689 mRNA Translation: AAI45690.1

The Consensus CDS (CCDS) project

More...
CCDSi
CCDS49621.1 [Q8CCJ9-6]

NCBI Reference Sequences

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RefSeqi
NP_001074878.1, NM_001081409.1 [Q8CCJ9-6]

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENSMUST00000229160; ENSMUSP00000155487; ENSMUSG00000072501 [Q8CCJ9-6]
ENSMUST00000230882; ENSMUSP00000155575; ENSMUSG00000072501 [Q8CCJ9-2]

Database of genes from NCBI RefSeq genomes

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GeneIDi
239510

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
mmu:239510

UCSC genome browser

More...
UCSCi
uc007wae.1 mouse [Q8CCJ9-2]
uc007wag.1 mouse [Q8CCJ9-6]
uc007wah.1 mouse [Q8CCJ9-1]
uc007wak.1 mouse [Q8CCJ9-3]
uc007wan.1 mouse [Q8CCJ9-8]
uc007wao.1 mouse [Q8CCJ9-7]

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK032638 mRNA Translation: BAC27964.1
AK040888 mRNA Translation: BAC30733.1 Different initiation.
AK046670 mRNA Translation: BAC32830.1 Different initiation.
AK047044 mRNA Translation: BAC32946.1
AK053606 mRNA Translation: BAC35444.1
BC052212 mRNA Translation: AAH52212.1
BC145689 mRNA Translation: AAI45690.1
CCDSiCCDS49621.1 [Q8CCJ9-6]
RefSeqiNP_001074878.1, NM_001081409.1 [Q8CCJ9-6]

3D structure databases

SMRiQ8CCJ9
ModBaseiSearch...

Protein-protein interaction databases

BioGridi232090, 2 interactors
STRINGi10090.ENSMUSP00000035682

PTM databases

iPTMnetiQ8CCJ9
PhosphoSitePlusiQ8CCJ9

Proteomic databases

EPDiQ8CCJ9
jPOSTiQ8CCJ9
MaxQBiQ8CCJ9
PaxDbiQ8CCJ9
PeptideAtlasiQ8CCJ9
PRIDEiQ8CCJ9

Genome annotation databases

EnsembliENSMUST00000229160; ENSMUSP00000155487; ENSMUSG00000072501 [Q8CCJ9-6]
ENSMUST00000230882; ENSMUSP00000155575; ENSMUSG00000072501 [Q8CCJ9-2]
GeneIDi239510
KEGGimmu:239510
UCSCiuc007wae.1 mouse [Q8CCJ9-2]
uc007wag.1 mouse [Q8CCJ9-6]
uc007wah.1 mouse [Q8CCJ9-1]
uc007wak.1 mouse [Q8CCJ9-3]
uc007wan.1 mouse [Q8CCJ9-8]
uc007wao.1 mouse [Q8CCJ9-7]

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
51105
MGIiMGI:2444412 Phf20l1

Phylogenomic databases

eggNOGiKOG1844 Eukaryota
ENOG410YHG2 LUCA
GeneTreeiENSGT00940000156215
InParanoidiQ8CCJ9
KOiK18402
OMAiQKPGASW
OrthoDBi147824at2759
PhylomeDBiQ8CCJ9
TreeFamiTF106475

Miscellaneous databases

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

More...
ChiTaRSi
Phf20l1 mouse

Protein Ontology

More...
PROi
PR:Q8CCJ9
RNActiQ8CCJ9 protein

The Stanford Online Universal Resource for Clones and ESTs

More...
SOURCEi
Search...

Gene expression databases

BgeeiENSMUSG00000072501 Expressed in 274 organ(s), highest expression level in cumulus cell
ExpressionAtlasiQ8CCJ9 baseline and differential
GenevisibleiQ8CCJ9 MM

Family and domain databases

Gene3Di3.30.40.10, 1 hit
InterProiView protein in InterPro
IPR014002 Agenet_dom_plant
IPR022255 DUF3776
IPR040477 KDM4_Tudor_2
IPR004092 Mbt
IPR002999 Tudor
IPR019786 Zinc_finger_PHD-type_CS
IPR011011 Znf_FYVE_PHD
IPR013083 Znf_RING/FYVE/PHD
PfamiView protein in Pfam
PF12618 DUF3776, 1 hit
PF02820 MBT, 1 hit
PF18104 Tudor_2, 1 hit
SMARTiView protein in SMART
SM00743 Agenet, 2 hits
SM00333 TUDOR, 2 hits
SUPFAMiSSF57903 SSF57903, 1 hit
PROSITEiView protein in PROSITE
PS01359 ZF_PHD_1, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiP20L1_MOUSE
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q8CCJ9
Secondary accession number(s): A6H5Y9
, Q80UN6, Q8BPP8, Q8BQQ6, Q8BS11, Q8C8H9
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 20, 2008
Last sequence update: January 11, 2011
Last modified: December 11, 2019
This is version 116 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
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