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Protein

TPR and ankyrin repeat-containing protein 1

Gene

Trank1

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
TPR and ankyrin repeat-containing protein 1
Alternative name(s):
Lupus brain antigen 1
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Trank1
Synonyms:Gm187, Kiaa0342, Lba1
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMus musculus (Mouse)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10090 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000589 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 9

Organism-specific databases

Mouse genome database (MGD) from Mouse Genome Informatics (MGI)

More...
MGIi
MGI:1341834 Trank1

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003482391 – 2999TPR and ankyrin repeat-containing protein 1Add BLAST2999

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q8BV79

PeptideAtlas

More...
PeptideAtlasi
Q8BV79

PRoteomics IDEntifications database

More...
PRIDEi
Q8BV79

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
Q8BV79

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...
PhosphoSitePlusi
Q8BV79

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the ‘Expression’ section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified ‘at protein level’. <br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Expressed only in the brain. Detected in the hippocampus, hypothalamus and cingulate gyrus.1 Publication

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSMUSG00000062296 Expressed in 133 organ(s), highest expression level in telencephalon mantle layer (mouse)

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q8BV79 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q8BV79 MM

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

Protein interaction database and analysis system

More...
IntActi
Q8BV79, 1 interactor

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase

More...
ProteinModelPortali
Q8BV79

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q8BV79

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati144 – 177TPR 1Add BLAST34
Repeati179 – 211TPR 2Add BLAST33
Repeati297 – 327ANK 1Add BLAST31
Repeati328 – 361ANK 2Add BLAST34
Repeati369 – 405ANK 3Add BLAST37
Repeati538 – 567ANK 4Add BLAST30
Repeati572 – 593ANK 5Add BLAST22
Repeati621 – 654ANK 6Add BLAST34
Repeati1772 – 1805TPR 3Add BLAST34
Repeati1866 – 1899TPR 4Add BLAST34

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi122 – 126Poly-Arg5
Compositional biasi1163 – 1171Poly-Glu9

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

ANK repeat, Repeat, TPR repeat

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG410IJ97 Eukaryota
ENOG410XUX5 LUCA

Ensembl GeneTree

More...
GeneTreei
ENSGT00940000153370

The HOVERGEN Database of Homologous Vertebrate Genes

More...
HOVERGENi
HBG108082

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q8BV79

Identification of Orthologs from Complete Genome Data

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OMAi
KDLDDSM

Database of Orthologous Groups

More...
OrthoDBi
EOG091G0033

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q8BV79

TreeFam database of animal gene trees

More...
TreeFami
TF335821

Family and domain databases

Conserved Domains Database

More...
CDDi
cd00204 ANK, 2 hits

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.25.40.10, 1 hit
1.25.40.20, 2 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR002110 Ankyrin_rpt
IPR020683 Ankyrin_rpt-contain_dom
IPR036770 Ankyrin_rpt-contain_sf
IPR027417 P-loop_NTPase
IPR013026 TPR-contain_dom
IPR011990 TPR-like_helical_dom_sf
IPR039904 TRANK1

The PANTHER Classification System

More...
PANTHERi
PTHR21529 PTHR21529, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00248 ANK, 4 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF48403 SSF48403, 2 hits
SSF48452 SSF48452, 1 hit
SSF52540 SSF52540, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50297 ANK_REP_REGION, 1 hit
PS50293 TPR_REGION, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (2+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 2 <p>This subsection of the ‘Sequence’ section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 2 described isoforms and 1 potential isoform that is computationally mapped.Show allAlign All

Isoform 1 (identifier: Q8BV79-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MASTTAGRRW PPRRRSSRRG PTPRSRAPGA KLSAPEAGPP RRGPLPRGGA
60 70 80 90 100
GRDTLLGAKA TPSSPAARRY VTALGPPQPR GSTDSACAAL PQPVPHEPRE
110 120 130 140 150
AAFRLAPASE RGASVSPARI PRRRRRVPAM WDPRAARTPP RELAMLLCNK
160 170 180 190 200
SNAFYNLGKW NEAFLAAKEC LQWDPTYVKG YYRAGYSLLH LLQPYEAARM
210 220 230 240 250
FFEGLRLLQR SPDQLQVPDF LVGIFTTMSS DSIVLQSFLP CFDHIFTTGF
260 270 280 290 300
STEVWQYVIQ KLAKKGLWHS FLLLSAKKDR LPSNIHVSEL SLQSLFEKYV
310 320 330 340 350
FIGFYEKLEQ VPKLVQWLVS IGANIETIGP NPLHALMRLC IQARESQLFR
360 370 380 390 400
WVMDQKPEWK EHINHRDDAG CTVLHVAAAH FPGYTSRRQT EDVQMLLSFG
410 420 430 440 450
ADPTLLDGHA RTVVDVLKRN KNFRAIDKIN SHLEKLASSS KGLSEIPAGL
460 470 480 490 500
VCDVNRDCAT TFIKFLLERQ KWPEVLLLLT RKVSGQPQLR NGVIKDCDLS
510 520 530 540 550
DLDICTVIPH LSSWDQRKTQ LLSRLIDSGA LPEGLQDSQD RPLLMCLRHE
560 570 580 590 600
DFDLAFLLLT KGADPRSVSL VEGDTPLHAA LHIFLDINAD IGFNFLSHLL
610 620 630 640 650
DLFLSNPTEF YYLNPNVQDS NGNTLMHLLF QKGMLKRTKK LIDLLVKFDI
660 670 680 690 700
NFNLKNKAGK GVRHRIKKND ALLLAWNKAL TESRRKNRQD PAAHLGRLSR
710 720 730 740 750
SSAPGHTSQL KSQTSFKSLP CGTADTTLSK GLTESLPDVQ VSRQEPEAVR
760 770 780 790 800
TRSLRDRLVQ DITVLIQQVE LGMPLPEDSP QRDSPKVAAG TEGKKDKLQR
810 820 830 840 850
TQRMGSSGCS GNNPVASEAG DGAQAGPGAS QLVPVGNRLG VASDNQENWT
860 870 880 890 900
MQEIQACLQD FDNMTWEIEC TSEMLKKLSS KVMTKVIKKK IILAIQQLGN
910 920 930 940 950
GEWTQGLQKR LKHSKGNIQL FEAKLDKGAR MLWELAIDFS ARCSENSEKI
960 970 980 990 1000
IGTERNTYSL EKSGRVYTEI IRIWDIVLDH CKLSDSIMAI CSAYTRGLSC
1010 1020 1030 1040 1050
VLRKKLKGIN KGQVSANMKI QKRIPRCYVE DTEAEKSLEQ VDPEYFPPAS
1060 1070 1080 1090 1100
AVETEYSIMK FHSFSTNMAL NILNDMTATV EYPFRVGELE YAVIDLNPKP
1110 1120 1130 1140 1150
LEPIILIGRS GTGKTTCCLY RLWKKFHVYW EKAEQAGSPL LSKQILPKRR
1160 1170 1180 1190 1200
LEVEPGKEGP GREEEEHEEE EGSIKVETVD GIDEEQESEA CAGGATVEPA
1210 1220 1230 1240 1250
GDSQGAEGCV PDHPHQLEHL HQIFVTKNHV LCQEVQRNFI ELSKSTKATS
1260 1270 1280 1290 1300
HYKPLDPNVH KLQDLRDENF PLFVTSKQLL LLLDASLPKP FFLRNEDGSL
1310 1320 1330 1340 1350
KRTIVGWSTQ EEFSIPSWEE DDEEVEADGN YNEEEKATET QTGDSDPRVY
1360 1370 1380 1390 1400
VTFEVFTNEI WPKMIKGRSS YNPALIWKEI KSFLKGSFEA LSCPHGRLTE
1410 1420 1430 1440 1450
EAYKKLGRKR SPNFKEDRSE IYSLFCLYQQ IRSQKGYFDE EDVLYNLSWR
1460 1470 1480 1490 1500
LSKLRVLPWS IHELYGDEIQ DFTQAELALL MKCINDPNAM FLTGDTAQSI
1510 1520 1530 1540 1550
MKGVAFRFSD LLSLFHYASR STVDKQCAVR KPKRIHQLYQ NYRSHSGILN
1560 1570 1580 1590 1600
LASGVVDLLQ FYFPESFDRL PRDSGLFDGP KPTLLDSCSV SDLAILLRGN
1610 1620 1630 1640 1650
KRKTQPIEFG AHQVILVANE KAKEKIPEEL GLALVLTVYE AKGLEFDDVL
1660 1670 1680 1690 1700
LYNFFTDSEA YKEWKIISSF TPSSDSREEK WPLVDVPLER SSPSQARSLM
1710 1720 1730 1740 1750
VNPEMYKLLN GELKQLYTAI TRARVNLWIF DENLEKRAPA FKYFIRRDFV
1760 1770 1780 1790 1800
QVVKTDENKD FDDSMFVKTS TPYEWIIQGD YYAKHQCWKV AAKCYQKGDA
1810 1820 1830 1840 1850
LEKEKLALAH YTALNMKSKK FSPKEKELQY LELAKTYLEC NEPKLSLKCL
1860 1870 1880 1890 1900
SYAKEFQLSA QLCERLGKIR DAAYFYKRSQ CFQDAFRCFE QIQEFDLALR
1910 1920 1930 1940 1950
MYCQEELFEE AAIAVEKYEE MLKNKTFPIP KLSYSASQFY LEAAAKYLSA
1960 1970 1980 1990 2000
NKSKEMMAVL SKLDVEDQLV FLKSRKCLAE AAELLNREGR REEAALLMKQ
2010 2020 2030 2040 2050
HGCLLEAARL TANKDFQASC LLGVARFNVA RDSDIEHTKV ILREALDLCY
2060 2070 2080 2090 2100
QTSQLAGIAE AQFLLGIILR DFQKLRDAFI KFDMLNHSAG MVEALYEAAS
2110 2120 2130 2140 2150
LCESEHQKVL ALAPGGLEVL LNLVRALKNV TNNAEKEMVK SCFEFFGIFQ
2160 2170 2180 2190 2200
VDAKYCQIAQ NDPGPILRII LDLDLTLSEK KTKDHFLIVT DQVKLALNKH
2210 2220 2230 2240 2250
LLGRLCQITQ ILLGKAYPGI CMRFIVGLKC EDEQCEDFHR PLRRCEAKCM
2260 2270 2280 2290 2300
VQSKMHLVAI NGLLLEAKKV FPNVLAEDLE EMDYILSPDT YGLCKSFLNL
2310 2320 2330 2340 2350
LFPRHFHQRV LSENPMACKD ILKPNYKSFR SFRCALKEYI HDLFQKESAH
2360 2370 2380 2390 2400
SRRESTDLWL SAMQAFLLSS SYPEDFEKLL RQEEDSYNRE LKVLESDRED
2410 2420 2430 2440 2450
RGRGRGSRVR GIEGKFGMLV PNREDENVEK SYLCFIRLLE SSMDQLYVRR
2460 2470 2480 2490 2500
NPGDYKRLFF RFMNVLIKRC KAPLVPSIIN TVVLLELQFV HCGVVLTRLW
2510 2520 2530 2540 2550
KNAVLCLPKS YIALLHFWEF LYGKKDRESG EVFSIIQEYK PKDVTRAIRD
2560 2570 2580 2590 2600
FRFHLSYLVK VLCGYENMNF NVLLDSFSEI DYVISGEAER TLVLCLVMLV
2610 2620 2630 2640 2650
NAEEVLQPFC KPLLFRHFRE IQTRLQLMSM DWPGQVPKRL LKVVQRVLVA
2660 2670 2680 2690 2700
ASVKSVAEAL QDLLFERDEE YLVDCHWRWD SVHTKGTVVR GLCHEEVRLN
2710 2720 2730 2740 2750
RLLCTGPMDQ FADSEWDFGE DETHELDELA QEDRDNFLAA ILSQKQRKAL
2760 2770 2780 2790 2800
IQRKLRRVCL VVSLCIRWRR WVQTEHSRED REVRPGNFKR ADVDRTQCDL
2810 2820 2830 2840 2850
CGVKFTRSPE SYFSPGKAFE GTATEAVLIS RAELEGRECR ERISESYEQH
2860 2870 2880 2890 2900
IRLEGHRRQQ AAYQKYLDFF HEKVDPIIEE GKVVVQGIEQ SVWIRSHLGS
2910 2920 2930 2940 2950
KEQSHMLQRK VQEHIRRVSD LVEELYRRKA WAEAEEVMTQ QVKILTLSVK
2960 2970 2980 2990
NAQEWLKKTE LRLKDEGTVQ EEEYENEVED FGELRPRRRA QKCGKQRKH
Length:2,999
Mass (Da):343,320
Last modified:September 2, 2008 - v3
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i4B1EF2C864AC66D3
GO
Isoform 2 (identifier: Q8BV79-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-1699: Missing.

Show »
Length:1,300
Mass (Da):151,756
Checksum:i8EECC7DCFC71A0DA
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A0G2JGE4A0A0G2JGE4_MOUSE
TPR and ankyrin repeat-containing p...
Trank1
142Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti1849 – 1851Missing in BAC97929 (PubMed:14621295).Curated3

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting. The information stored in this subsection is used to automatically construct alternative protein sequence(s) for display.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_0351171 – 1699Missing in isoform 2. 1 PublicationAdd BLAST1699

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AC126677 Genomic DNA No translation available.
AC113495 Genomic DNA No translation available.
BC086653 mRNA Translation: AAH86653.1
AK079552 mRNA Translation: BAC37682.2
AK129119 Transcribed RNA Translation: BAC97929.1

The Consensus CDS (CCDS) project

More...
CCDSi
CCDS52942.1 [Q8BV79-1]

NCBI Reference Sequences

More...
RefSeqi
NP_001158131.1, NM_001164659.1 [Q8BV79-1]

UniGene gene-oriented nucleotide sequence clusters

More...
UniGenei
Mm.270754

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENSMUST00000078626; ENSMUSP00000077697; ENSMUSG00000062296 [Q8BV79-1]

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
320429

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
mmu:320429

UCSC genome browser

More...
UCSCi
uc009rvt.2 mouse [Q8BV79-1]
uc009rvu.1 mouse [Q8BV79-2]

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC126677 Genomic DNA No translation available.
AC113495 Genomic DNA No translation available.
BC086653 mRNA Translation: AAH86653.1
AK079552 mRNA Translation: BAC37682.2
AK129119 Transcribed RNA Translation: BAC97929.1
CCDSiCCDS52942.1 [Q8BV79-1]
RefSeqiNP_001158131.1, NM_001164659.1 [Q8BV79-1]
UniGeneiMm.270754

3D structure databases

ProteinModelPortaliQ8BV79
SMRiQ8BV79
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ8BV79, 1 interactor

PTM databases

iPTMnetiQ8BV79
PhosphoSitePlusiQ8BV79

Proteomic databases

PaxDbiQ8BV79
PeptideAtlasiQ8BV79
PRIDEiQ8BV79

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000078626; ENSMUSP00000077697; ENSMUSG00000062296 [Q8BV79-1]
GeneIDi320429
KEGGimmu:320429
UCSCiuc009rvt.2 mouse [Q8BV79-1]
uc009rvu.1 mouse [Q8BV79-2]

Organism-specific databases

Comparative Toxicogenomics Database

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CTDi
9881
MGIiMGI:1341834 Trank1

Rodent Unidentified Gene-Encoded large proteins database

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Rougei
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Phylogenomic databases

eggNOGiENOG410IJ97 Eukaryota
ENOG410XUX5 LUCA
GeneTreeiENSGT00940000153370
HOVERGENiHBG108082
InParanoidiQ8BV79
OMAiKDLDDSM
OrthoDBiEOG091G0033
PhylomeDBiQ8BV79
TreeFamiTF335821

Miscellaneous databases

Protein Ontology

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PROi
PR:Q8BV79

The Stanford Online Universal Resource for Clones and ESTs

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SOURCEi
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Gene expression databases

BgeeiENSMUSG00000062296 Expressed in 133 organ(s), highest expression level in telencephalon mantle layer (mouse)
ExpressionAtlasiQ8BV79 baseline and differential
GenevisibleiQ8BV79 MM

Family and domain databases

CDDicd00204 ANK, 2 hits
Gene3Di1.25.40.10, 1 hit
1.25.40.20, 2 hits
InterProiView protein in InterPro
IPR002110 Ankyrin_rpt
IPR020683 Ankyrin_rpt-contain_dom
IPR036770 Ankyrin_rpt-contain_sf
IPR027417 P-loop_NTPase
IPR013026 TPR-contain_dom
IPR011990 TPR-like_helical_dom_sf
IPR039904 TRANK1
PANTHERiPTHR21529 PTHR21529, 1 hit
SMARTiView protein in SMART
SM00248 ANK, 4 hits
SUPFAMiSSF48403 SSF48403, 2 hits
SSF48452 SSF48452, 1 hit
SSF52540 SSF52540, 1 hit
PROSITEiView protein in PROSITE
PS50297 ANK_REP_REGION, 1 hit
PS50293 TPR_REGION, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiTRNK1_MOUSE
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q8BV79
Secondary accession number(s): Q5RJH5, Q6ZQD5
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: September 2, 2008
Last sequence update: September 2, 2008
Last modified: December 5, 2018
This is version 123 of the entry and version 3 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
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