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Entry version 109 (16 Oct 2019)
Sequence version 1 (01 Mar 2003)
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Protein

Soluble scavenger receptor cysteine-rich domain-containing protein SSC5D

Gene

Ssc5d

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Binds to extracellular matrix proteins. Binds to pathogen-associated molecular patterns (PAMPs) present on the cell walls of Gram-positive and Gram-negative bacteria and fungi, behaving as a pattern recognition receptor (PRR). Induces bacterial and fungal aggregation and subsequent inhibition of PAMP-induced cytokine release. Does not possess intrinsic bactericidal activity. May play a role in the innate defense and homeostasis of certain epithelial surfaces.1 Publication

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDevelopmental protein, Receptor
Biological processImmunity, Innate immunity

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Soluble scavenger receptor cysteine-rich domain-containing protein SSC5D
Alternative name(s):
Scavenger receptor cysteine-rich domain-containing protein LOC284297 homolog
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Ssc5d
Synonyms:S5D-SRCRB
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMus musculus (Mouse)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10090 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000589 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 7

Organism-specific databases

Mouse genome database (MGD) from Mouse Genome Informatics (MGI)

More...
MGIi
MGI:3606211 Ssc5d

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm, Secreted

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 16Sequence analysisAdd BLAST16
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_000033298617 – 1371Soluble scavenger receptor cysteine-rich domain-containing protein SSC5DAdd BLAST1355

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the PTM / Processing":/help/ptm_processing_section section describes the positions of cysteine residues participating in disulfide bonds.<p><a href='/help/disulfid' target='_top'>More...</a></p>Disulfide bondi45 ↔ 109PROSITE-ProRule annotation
Disulfide bondi58 ↔ 119PROSITE-ProRule annotation
Disulfide bondi89 ↔ 99PROSITE-ProRule annotation
Disulfide bondi224 ↔ 288PROSITE-ProRule annotation
Disulfide bondi237 ↔ 298PROSITE-ProRule annotation
Disulfide bondi268 ↔ 278PROSITE-ProRule annotation
Disulfide bondi330 ↔ 394PROSITE-ProRule annotation
Disulfide bondi343 ↔ 404PROSITE-ProRule annotation
Disulfide bondi374 ↔ 384PROSITE-ProRule annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm_processing_section">PTM / Processing</a> section specifies the position and type of each covalently attached glycan group (mono-, di-, or polysaccharide).<p><a href='/help/carbohyd' target='_top'>More...</a></p>Glycosylationi377N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi422N-linked (GlcNAc...) asparagineSequence analysis1
Disulfide bondi489 ↔ 554PROSITE-ProRule annotation
Disulfide bondi502 ↔ 564PROSITE-ProRule annotation
Disulfide bondi534 ↔ 544PROSITE-ProRule annotation
Disulfide bondi783 ↔ 847PROSITE-ProRule annotation
Disulfide bondi796 ↔ 857PROSITE-ProRule annotation
Disulfide bondi827 ↔ 837PROSITE-ProRule annotation
Glycosylationi1044N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi1131N-linked (GlcNAc...) asparagineSequence analysis1

<p>This subsection of the <a href="http://www.uniprot.org/help/ptm_processing_section">PTM/processing</a> section describes post-translational modifications (PTMs). This subsection <strong>complements</strong> the information provided at the sequence level or describes modifications for which <strong>position-specific data is not yet available</strong>.<p><a href='/help/post-translational_modification' target='_top'>More...</a></p>Post-translational modificationi

Partially N- and O-glycosylated.1 Publication

Keywords - PTMi

Disulfide bond, Glycoprotein

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q8BV57

PeptideAtlas

More...
PeptideAtlasi
Q8BV57

PRoteomics IDEntifications database

More...
PRIDEi
Q8BV57

PTM databases

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...
PhosphoSitePlusi
Q8BV57

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the ‘Expression’ section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified ‘at protein level’. <br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Detected throughout the gastrointestinal and genitourinary tracts, in serosal salivary gland, the exocrine part of pancreas and testis, as well as in a few tubular structures in kidney. Not detected in lung and heart (at protein level). Strongly expressed in testis, kidney and pancreas, with lower levels detected in bone marrow, spleen, lung, liver, colon, stomach and skeletal muscle. Very low levels or no expression detected in thymus, esophagus, jejunum, ileum, duodenum, ovary, uterus, heart, trachea, brain, cerebellum and bladder.1 Publication

<p>This subsection of the ‘Expression’ section provides information on the expression of the gene product at various stages of a cell, tissue or organism development. By default, the information is derived from experiments at the mRNA level, unless specified ‘at the protein level’.<p><a href='/help/developmental_stage' target='_top'>More...</a></p>Developmental stagei

At 9.5 dpc, detected in placodes, ectodermal thickenings where organs or structures will develop. Expression levels increase substantially between 9 and 14 dpc.1 Publication

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSMUSG00000035279 Expressed in 90 organ(s), highest expression level in quadriceps femoris

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q8BV57 MM

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Interacts with LGALS1 and laminin.

1 Publication

GO - Molecular functioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
10090.ENSMUSP00000052126

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q8BV57

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini20 – 120SRCR 1PROSITE-ProRule annotationAdd BLAST101
Domaini199 – 299SRCR 2PROSITE-ProRule annotationAdd BLAST101
Domaini305 – 405SRCR 3PROSITE-ProRule annotationAdd BLAST101
Domaini464 – 565SRCR 4PROSITE-ProRule annotationAdd BLAST102
Domaini758 – 858SRCR 5PROSITE-ProRule annotationAdd BLAST101

Keywords - Domaini

Repeat, Signal

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG410IHBC Eukaryota
ENOG410XQVR LUCA

Ensembl GeneTree

More...
GeneTreei
ENSGT00940000162592

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000154412

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q8BV57

Identification of Orthologs from Complete Genome Data

More...
OMAi
WTWDTPS

Database of Orthologous Groups

More...
OrthoDBi
158600at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q8BV57

TreeFam database of animal gene trees

More...
TreeFami
TF329295

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.10.250.10, 5 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR001190 SRCR
IPR017448 SRCR-like_dom
IPR036772 SRCR-like_dom_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00530 SRCR, 5 hits

Protein Motif fingerprint database; a protein domain database

More...
PRINTSi
PR00258 SPERACTRCPTR

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00202 SR, 5 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF56487 SSF56487, 5 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS00420 SRCR_1, 5 hits
PS50287 SRCR_2, 5 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

Q8BV57-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MRGLACLLAM LVGIQAIERL RLADGPHGCA GRLEVWHSGR WGTVCDDGWD
60 70 80 90 100
LRDAEVACRV LGCGGALAAP GGAFFGEGTG PVWLSELNCR GNEGQLGICP
110 120 130 140 150
HRGWKAHICS HEEDAGVVCV GQRAANSRED SMSLLDGDPW LALSGELSPS
160 170 180 190 200
SEEPPITHAP QPAASSQNGP RKKNPRPPKQ TKSTRAPVLT NGAPHQERLR
210 220 230 240 250
LVSGPHGCAG RLEVWHGGRW GTVCDDGWDL RDAAVACREL GCGGALAAPG
260 270 280 290 300
GARFGPGEGP VWMDDVGCGG GEEALRDCPR SPWGRSNCDH TEDAGLVCTG
310 320 330 340 350
PAPRIRLADG PHGCAGRLEV WHGGRWGSVC DDAWDLRDAA VACKELGCGG
360 370 380 390 400
ALAAPGGAFF GEGTGPIILD DLRCRGNETA LRFCPARPWG QHDCHHREDA
410 420 430 440 450
GAVCDGMPLG AVQPTVPAVD SNSTAHRLLS TSVGQMPGPA GPWPPSASPT
460 470 480 490 500
APPEPGPEAG SPQLRLVAGP SRCSGRLEVW HDGRWGTVCD DSWDMRDSAV
510 520 530 540 550
VCRELGCGRP RQPDPAAGRF GWGAGPIWLD DVGCMGTEAS LSECPAASWG
560 570 580 590 600
KHNCAHNEDV GVTCTGTPGL DTISDPFSWS WLPGLGRDQD AWLPGELTTK
610 620 630 640 650
PSASLTSSVP QKPTKVPGKA PKSTKKWVTK NARRPTTQPP GMPTTKHSRA
660 670 680 690 700
PGTPTSLHPT ARTSELPKRL TTEAPHRQTS HTTVRLTPRV PWEWTSEPVV
710 720 730 740 750
SQSTQGPQEV TSEATTTENP QTSLEPSGEN TEGSLESSQD PATTPTAGVP
760 770 780 790 800
VPSGPFRVRL ADGPNRCAGR LEVWHAGLWG TVCDDSWDIR DATVACWELG
810 820 830 840 850
CGKVRPRVGK THYGPGTGPI WLDDMGCKGS EMSLSDCPSG AWGKHNCDHE
860 870 880 890 900
EDVVLTCTGY TGDDDYPSWT WDPTSGEDLT KGTTVAARPG HTLSWATTTN
910 920 930 940 950
TEVPSPATQN LPDTDDQGGY ESSWTWDTPS GRGLFKGTPT TTKPGSTVTT
960 970 980 990 1000
STSKSPGHPF PAPRARAGSP RKPTPERRPL PTSATTSSPA SSSSPEPSGS
1010 1020 1030 1040 1050
RQTSGSWPQL IPDSKQEGTS SSPKPSLLTP GLPSPATFAL STPNTSLLPT
1060 1070 1080 1090 1100
RSPELSGSPT PTSPEGLTSA SSMLSEVSRL SPTSELTPGP DTTPAPEIIP
1110 1120 1130 1140 1150
ESSDSSDLPM NTRTPTQPFT ASHPTSIPQL NTTSYPTIAP QPTTNPQQPR
1160 1170 1180 1190 1200
SPHPATSPQP PTNTHPSSTP ATPTESLPSS RKTELSSPTK PRLNSELTFE
1210 1220 1230 1240 1250
EAPSTDASQT QNLELFLASE SGPSSPSPAS NLDPLPTDAF KPPRSQTLHS
1260 1270 1280 1290 1300
ASDHLTQGPT PNHNPDPFGP CVSPLPPVRV MACEPPALVE LVGAVREVGD
1310 1320 1330 1340 1350
QLQRLTWVLE QDRQERQVLA LGLAQLVEAA QGLGQLSETV KRLAEVAWPP
1360 1370
STPVPMTTTT EEEERPLRGD V
Length:1,371
Mass (Da):144,637
Last modified:March 1, 2003 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i42D0E12A10207D5D
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti633R → K in BAE38328 (PubMed:16141072).Curated1
Sequence conflicti633R → K in EDL31272 (Ref. 3) Curated1
Sequence conflicti633R → K in AAI41045 (PubMed:15489334).Curated1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
EU850434 mRNA Translation: ACF54723.1
AK079906 mRNA Translation: BAC37780.1
AK165666 mRNA Translation: BAE38328.1
CH466627 Genomic DNA Translation: EDL31272.1
BC141044 mRNA Translation: AAI41045.1

The Consensus CDS (CCDS) project

More...
CCDSi
CCDS20750.1

NCBI Reference Sequences

More...
RefSeqi
NP_766596.1, NM_173008.2

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENSMUST00000057612; ENSMUSP00000052126; ENSMUSG00000035279

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
269855

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
mmu:269855

UCSC genome browser

More...
UCSCi
uc009eza.1 mouse

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EU850434 mRNA Translation: ACF54723.1
AK079906 mRNA Translation: BAC37780.1
AK165666 mRNA Translation: BAE38328.1
CH466627 Genomic DNA Translation: EDL31272.1
BC141044 mRNA Translation: AAI41045.1
CCDSiCCDS20750.1
RefSeqiNP_766596.1, NM_173008.2

3D structure databases

SMRiQ8BV57
ModBaseiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000052126

PTM databases

PhosphoSitePlusiQ8BV57

Proteomic databases

PaxDbiQ8BV57
PeptideAtlasiQ8BV57
PRIDEiQ8BV57

Genome annotation databases

EnsembliENSMUST00000057612; ENSMUSP00000052126; ENSMUSG00000035279
GeneIDi269855
KEGGimmu:269855
UCSCiuc009eza.1 mouse

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
284297
MGIiMGI:3606211 Ssc5d

Phylogenomic databases

eggNOGiENOG410IHBC Eukaryota
ENOG410XQVR LUCA
GeneTreeiENSGT00940000162592
HOGENOMiHOG000154412
InParanoidiQ8BV57
OMAiWTWDTPS
OrthoDBi158600at2759
PhylomeDBiQ8BV57
TreeFamiTF329295

Miscellaneous databases

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

More...
ChiTaRSi
Ssc5d mouse

Protein Ontology

More...
PROi
PR:Q8BV57

The Stanford Online Universal Resource for Clones and ESTs

More...
SOURCEi
Search...

Gene expression databases

BgeeiENSMUSG00000035279 Expressed in 90 organ(s), highest expression level in quadriceps femoris
GenevisibleiQ8BV57 MM

Family and domain databases

Gene3Di3.10.250.10, 5 hits
InterProiView protein in InterPro
IPR001190 SRCR
IPR017448 SRCR-like_dom
IPR036772 SRCR-like_dom_sf
PfamiView protein in Pfam
PF00530 SRCR, 5 hits
PRINTSiPR00258 SPERACTRCPTR
SMARTiView protein in SMART
SM00202 SR, 5 hits
SUPFAMiSSF56487 SSF56487, 5 hits
PROSITEiView protein in PROSITE
PS00420 SRCR_1, 5 hits
PS50287 SRCR_2, 5 hits

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiSRCRL_MOUSE
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q8BV57
Secondary accession number(s): B2RUB0, C6ZFQ2, Q3TMW2
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 20, 2008
Last sequence update: March 1, 2003
Last modified: October 16, 2019
This is version 109 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
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