Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

snRNA-activating protein complex subunit 4

Gene

Snapc4

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Part of the SNAPc complex required for the transcription of both RNA polymerase II and III small-nuclear RNA genes. Binds to the proximal sequence element (PSE), a non-TATA-box basal promoter element common to these 2 types of genes. Recruits TBP and BRF2 to the U6 snRNA TATA box (By similarity).By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Function’ section specifies the position and type of each DNA-binding domain present within the protein.<p><a href='/help/dna_bind' target='_top'>More...</a></p>DNA bindingi317 – 341H-T-H motifPROSITE-ProRule annotationAdd BLAST25
DNA bindingi424 – 447H-T-H motifPROSITE-ProRule annotationAdd BLAST24
DNA bindingi476 – 499H-T-H motifPROSITE-ProRule annotationAdd BLAST24

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

Reactome - a knowledgebase of biological pathways and processes

More...
Reactomei
R-MMU-6807505 RNA polymerase II transcribes snRNA genes
R-MMU-76071 RNA Polymerase III Transcription Initiation From Type 3 Promoter

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
snRNA-activating protein complex subunit 4
Short name:
SNAPc subunit 4
Alternative name(s):
snRNA-activating protein complex 190 kDa subunit
Short name:
SNAPc 190 kDa subunit
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Snapc4Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMus musculus (Mouse)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10090 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000589 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 2

Organism-specific databases

Mouse genome database (MGD) from Mouse Genome Informatics (MGI)

More...
MGIi
MGI:2443935 Snapc4

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00001971211 – 1333snRNA-activating protein complex subunit 4Add BLAST1333

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei68PhosphoserineBy similarity1
Modified residuei1252PhosphoserineBy similarity1
Modified residuei1254PhosphoserineBy similarity1
Modified residuei1301PhosphoserineCombined sources1
Modified residuei1309PhosphoserineCombined sources1

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q8BP86

PRoteomics IDEntifications database

More...
PRIDEi
Q8BP86

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
Q8BP86

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...
PhosphoSitePlusi
Q8BP86

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSMUSG00000036281 Expressed in 200 organ(s), highest expression level in bone marrow

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q8BP86 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q8BP86 MM

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Part of the SNAPc composed of 5 subunits: SNAPC1, SNAPC2, SNAPC3, SNAPC4 and SNAPC5. SNAPC4 interacts with SNAPC1, SNAPC2, SNAPC5, BRF2 and TBP (By similarity).By similarity

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

More...
BioGridi
230655, 2 interactors

STRING: functional protein association networks

More...
STRINGi
10090.ENSMUSP00000041767

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase

More...
ProteinModelPortali
Q8BP86

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q8BP86

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini250 – 288Myb-like 1PROSITE-ProRule annotationAdd BLAST39
Domaini289 – 343HTH myb-type 1PROSITE-ProRule annotationAdd BLAST55
Domaini344 – 395Myb-like 2PROSITE-ProRule annotationAdd BLAST52
Domaini396 – 451HTH myb-type 2PROSITE-ProRule annotationAdd BLAST56
Domaini452 – 503HTH myb-type 3PROSITE-ProRule annotationAdd BLAST52

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni84 – 133SNAPC5-bindingBy similarityAdd BLAST50
Regioni1131 – 1247SNAPC2-bindingBy similarityAdd BLAST117

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi903 – 1114Pro-richAdd BLAST212

Keywords - Domaini

Repeat

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG0048 Eukaryota
COG5147 LUCA

Ensembl GeneTree

More...
GeneTreei
ENSGT00940000160404

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000231537

The HOVERGEN Database of Homologous Vertebrate Genes

More...
HOVERGENi
HBG080315

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q8BP86

KEGG Orthology (KO)

More...
KOi
K09453

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q8BP86

Family and domain databases

Conserved Domains Database

More...
CDDi
cd00167 SANT, 3 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR009057 Homeobox-like_sf
IPR017877 Myb-like_dom
IPR015495 Myb-like_TF
IPR017930 Myb_dom
IPR001005 SANT/Myb
IPR031282 SNAPC4

The PANTHER Classification System

More...
PANTHERi
PTHR10641 PTHR10641, 1 hit
PTHR10641:SF944 PTHR10641:SF944, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00717 SANT, 5 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF46689 SSF46689, 3 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51294 HTH_MYB, 3 hits
PS50090 MYB_LIKE, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (3+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 3 <p>This subsection of the ‘Sequence’ section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 3 described isoforms and 2 potential isoforms that are computationally mapped.Show allAlign All

Isoform 1Curated (identifier: Q8BP86-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MDIDAEREKI TQEIQELERI LYPGSTSVHF EVSESSLSSD SEADSLPDED
60 70 80 90 100
LETAGAPILE EEGSSESSND EEDPKDKALP EDPETCLQLN MVYQEVIREK
110 120 130 140 150
LAEVSQLLAQ NQEQQEEILF DLSGTKCPKV KDGRSLPSYM YIGHFLKPYF
160 170 180 190 200
KDKVTGVGPP ANEETREKAT QGIKAFEQLL VTKWKHWEKA LLRKSVVSDR
210 220 230 240 250
LQRLLQPKLL KLEYLHEKQS RVSSELERQA LEKQIKEAEK EIQDINQLPE
260 270 280 290 300
EALLGNRLDS HDWEKISNIN FEGARSAEEI RKFWQSSEHP SISKQEWSTE
310 320 330 340 350
EVERLKAIAA THGHLEWHLV AEELGTSRSA FQCLQKFQQY NKTLKRKEWT
360 370 380 390 400
EEEDHMLTQL VQEMRVGNHI PYRKIVYFME GRDSMQLIYR WTKSLDPSLK
410 420 430 440 450
RGFWAPEEDA KLLQAVAKYG AQDWFKIREE VPGRSDAQCR DRYIRRLHFS
460 470 480 490 500
LKKGRWNAKE EQQLIQLIEK YGVGHWARIA SELPHRSGSQ CLSKWKILAR
510 520 530 540 550
KKQHLQRKRG QRPRHSSQWS SSGSSSSSSE DYGSSSGSDG SSGSENSDVE
560 570 580 590 600
LEASLEKSRA LTPQQYRVPD IDLWVPTRLI TSQSQREGTG CYPQHPAVSC
610 620 630 640 650
CTQDASQNHH KEGSTTVSAA EKNQLQVPYE THSTVPRGDR FLHFSDTHSA
660 670 680 690 700
SLKDPACKSH TLMKERPKQP LLPSSRSGSD PGNNTAGPHL RQLWHGTYQN
710 720 730 740 750
KQRRKRQALH RRLLKHRLLL AVIPWVGDIN LACTQAPRRP ATVQTKADSI
760 770 780 790 800
RMQLECARLA STPVFTLLIQ LLQIDTAGCM EVVRERKSQP PALLQPGTRN
810 820 830 840 850
TQPHLLQASS NAKNNTGCLP SMTGEQTAKR ASHKGRPRLG SCRTEATPFQ
860 870 880 890 900
VPVAAPRGLR PKPKTVSELL REKRLRESHA KKATQALGLN SQLLVSSPVI
910 920 930 940 950
LQPPLLPVPH GSPVVGPATS SVELSVPVAP VMVSSSPSGS WPVGGISATD
960 970 980 990 1000
KQPPNLQTIS LNPPHKGTQV AAPAAFRSLA LAPGQVPTGG HLSTLGQTST
1010 1020 1030 1040 1050
TSQKQSLPKV LPILRAAPSL TQLSVQPPVS GQPLATKSSL PVNWVLTTQK
1060 1070 1080 1090 1100
LLSVQVPAVV GLPQSVMTPE TIGLQAKQLP SPAKTPAFLE QPPASTDTEP
1110 1120 1130 1140 1150
KGPQGQEIPP TPGPEKAALD LSLLSQESEA AIVTWLKGCQ GAFVPPLGSR
1160 1170 1180 1190 1200
MPYHPPSLCS LRALSSLLLQ KQDLEQKASS LAASQAAGAQ PDPKAGALQA
1210 1220 1230 1240 1250
SLELVQRQFR DNPAYLLLKT RFLAIFSLPA FLATLPPNSI PTTLSPDVAV
1260 1270 1280 1290 1300
VSESDSEDLG DLELKDRARQ LDCMACRVQA SPAAPDPVQS HLVSPGQRAP
1310 1320 1330
SPGEVSAPSP LDASDGLDDL NVLRTRRARH SRR
Note: No experimental confirmation available.Curated
Length:1,333
Mass (Da):147,413
Last modified:October 25, 2005 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i586798D3A7D59B4E
GO
Isoform 2Curated (identifier: Q8BP86-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1290-1297: Missing.

Note: No experimental confirmation available.Curated
Show »
Length:1,325
Mass (Da):146,607
Checksum:i37C57AF98542E449
GO
Isoform 3Curated (identifier: Q8BP86-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-90: Missing.
     1290-1297: Missing.

Note: No experimental confirmation available.Curated
Show »
Length:1,235
Mass (Da):136,713
Checksum:i821B5C2514B9AA00
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A2AIV6A2AIV6_MOUSE
snRNA-activating protein complex su...
Snapc4
1,333Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
F7D5X7F7D5X7_MOUSE
snRNA-activating protein complex su...
Snapc4
254Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti498 – 505LARKKQHL → DAWADAWV in AAH44754 (PubMed:15489334).Curated8

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting. The information stored in this subsection is used to automatically construct alternative protein sequence(s) for display.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_0518551 – 90Missing in isoform 3. 1 PublicationAdd BLAST90
Alternative sequenceiVSP_0518571290 – 1297Missing in isoform 2 and isoform 3. 2 Publications8

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AK077522 mRNA Translation: BAC36843.1
BC044754 mRNA Translation: AAH44754.1
BC057031 mRNA Translation: AAH57031.1

The Consensus CDS (CCDS) project

More...
CCDSi
CCDS15802.1 [Q8BP86-2]

NCBI Reference Sequences

More...
RefSeqi
NP_001277348.1, NM_001290419.1 [Q8BP86-3]
NP_758842.1, NM_172339.4 [Q8BP86-2]

UniGene gene-oriented nucleotide sequence clusters

More...
UniGenei
Mm.207460

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENSMUST00000035427; ENSMUSP00000041767; ENSMUSG00000036281 [Q8BP86-2]

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
227644

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
mmu:227644

UCSC genome browser

More...
UCSCi
uc008iuu.2 mouse [Q8BP86-1]
uc008iuv.2 mouse [Q8BP86-2]
uc008iuw.2 mouse [Q8BP86-3]

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK077522 mRNA Translation: BAC36843.1
BC044754 mRNA Translation: AAH44754.1
BC057031 mRNA Translation: AAH57031.1
CCDSiCCDS15802.1 [Q8BP86-2]
RefSeqiNP_001277348.1, NM_001290419.1 [Q8BP86-3]
NP_758842.1, NM_172339.4 [Q8BP86-2]
UniGeneiMm.207460

3D structure databases

ProteinModelPortaliQ8BP86
SMRiQ8BP86
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi230655, 2 interactors
STRINGi10090.ENSMUSP00000041767

PTM databases

iPTMnetiQ8BP86
PhosphoSitePlusiQ8BP86

Proteomic databases

PaxDbiQ8BP86
PRIDEiQ8BP86

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000035427; ENSMUSP00000041767; ENSMUSG00000036281 [Q8BP86-2]
GeneIDi227644
KEGGimmu:227644
UCSCiuc008iuu.2 mouse [Q8BP86-1]
uc008iuv.2 mouse [Q8BP86-2]
uc008iuw.2 mouse [Q8BP86-3]

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
6621
MGIiMGI:2443935 Snapc4

Phylogenomic databases

eggNOGiKOG0048 Eukaryota
COG5147 LUCA
GeneTreeiENSGT00940000160404
HOGENOMiHOG000231537
HOVERGENiHBG080315
InParanoidiQ8BP86
KOiK09453
PhylomeDBiQ8BP86

Enzyme and pathway databases

ReactomeiR-MMU-6807505 RNA polymerase II transcribes snRNA genes
R-MMU-76071 RNA Polymerase III Transcription Initiation From Type 3 Promoter

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q8BP86

The Stanford Online Universal Resource for Clones and ESTs

More...
SOURCEi
Search...

Gene expression databases

BgeeiENSMUSG00000036281 Expressed in 200 organ(s), highest expression level in bone marrow
ExpressionAtlasiQ8BP86 baseline and differential
GenevisibleiQ8BP86 MM

Family and domain databases

CDDicd00167 SANT, 3 hits
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR017877 Myb-like_dom
IPR015495 Myb-like_TF
IPR017930 Myb_dom
IPR001005 SANT/Myb
IPR031282 SNAPC4
PANTHERiPTHR10641 PTHR10641, 1 hit
PTHR10641:SF944 PTHR10641:SF944, 1 hit
SMARTiView protein in SMART
SM00717 SANT, 5 hits
SUPFAMiSSF46689 SSF46689, 3 hits
PROSITEiView protein in PROSITE
PS51294 HTH_MYB, 3 hits
PS50090 MYB_LIKE, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiSNPC4_MOUSE
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q8BP86
Secondary accession number(s): Q6PGG7, Q80UG9, Q810L1
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 25, 2005
Last sequence update: October 25, 2005
Last modified: December 5, 2018
This is version 130 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again