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Entry version 116 (07 Apr 2021)
Sequence version 1 (01 Mar 2003)
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Protein

Nucleolar protein 11

Gene

Nol11

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Ribosome biogenesis factor. May be required for both optimal rDNA transcription and small subunit (SSU) pre-rRNA processing at sites A', A0, 1 and 2b (By similarity).By similarity

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionActivator
Biological processRibosome biogenesis, rRNA processing, Transcription, Transcription regulation

Enzyme and pathway databases

Reactome - a knowledgebase of biological pathways and processes

More...
Reactomei
R-MMU-6791226, Major pathway of rRNA processing in the nucleolus and cytosol

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Nucleolar protein 11
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Nol11
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMus musculus (Mouse)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10090 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000589 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 11

Organism-specific databases

Mouse genome database (MGD) from Mouse Genome Informatics (MGI)

More...
MGIi
MGI:1916229, Nol11

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Keywords - Cellular componenti

Nucleus

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00000969321 – 723Nucleolar protein 11Add BLAST723

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei346N6-methyllysineBy similarity1

Keywords - PTMi

Methylation

Proteomic databases

Encyclopedia of Proteome Dynamics

More...
EPDi
Q8BJW5

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q8BJW5

PeptideAtlas

More...
PeptideAtlasi
Q8BJW5

PRoteomics IDEntifications database

More...
PRIDEi
Q8BJW5

ProteomicsDB: a multi-organism proteome resource

More...
ProteomicsDBi
293871 [Q8BJW5-1]
293872 [Q8BJW5-2]

PTM databases

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...
PhosphoSitePlusi
Q8BJW5

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSMUSG00000018433, Expressed in dorsal pancreas and 290 other tissues

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q8BJW5, MM

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Interacts with UTP4.

Interacts with FBL/fibrillarin in a transcription-dependent manner. May associate with the proposed t-UTP subcomplex of the SSU processome containing at least UTP4, WDR43, HEATR1, UTP15, WDR75.

By similarity

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

More...
BioGRIDi
213155, 1 interactor

Protein interaction database and analysis system

More...
IntActi
Q8BJW5, 1 interactor

Molecular INTeraction database

More...
MINTi
Q8BJW5

STRING: functional protein association networks

More...
STRINGi
10090.ENSMUSP00000102368

Miscellaneous databases

RNAct, Protein-RNA interaction predictions for model organisms.

More...
RNActi
Q8BJW5, protein

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG502SB74, Eukaryota

Ensembl GeneTree

More...
GeneTreei
ENSGT00390000009760

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_025196_0_0_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q8BJW5

Identification of Orthologs from Complete Genome Data

More...
OMAi
WSDKRIF

Database of Orthologous Groups

More...
OrthoDBi
570601at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q8BJW5

TreeFam database of animal gene trees

More...
TreeFami
TF325877

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR042859, NOL11
IPR012584, NUC205

The PANTHER Classification System

More...
PANTHERi
PTHR15633, PTHR15633, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF08168, NUC205, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (2)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 2 <p>This subsection of the 'Sequence' section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform. This section is only present in reviewed entries, i.e. in UniProtKB/Swiss-Prot.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket
Isoform 1 (identifier: Q8BJW5-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the <div> <p><b>What is the canonical sequence?</b><p><a href='/help/canonical_and_isoforms' target='_top'>More...</a></p>canonicali sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MATLEEEFTL STGVLGAGPE GFLGVEQTDK ADQFLVTDSG RTVVLYKVSD
60 70 80 90 100
QKPLGSWSVK QGQSITCPAV CNFQTGEYIM VHDHKVLRIW NNDDVNVDKV
110 120 130 140 150
FKATLSAEVH RIHSVQRTEP LVLFRGGAAR GLEALLVEPQ QNIESVIPDE
160 170 180 190 200
EVIVWSEVFM LFKQPVLIFI TENHGHYYAY VRLCKSHSLS KYTLLLEKEE
210 220 230 240 250
KSVKPNFTAR VDGKFISLVS LSSDGCIYET LIPIYSSDTE QNQRLVRALM
260 270 280 290 300
LKSVVSGGVR NGVALTILDQ DHIAVLGPPL SASKECLSIW NIKFQTLQTS
310 320 330 340 350
KELPQGTSGQ LWYHGEVLFM LHGKSLTVIP YKCEESSLAG ALGKLKHTQE
360 370 380 390 400
SGTHSVPHFV NWETCSGYEL GSSGAEQSRT LRRKKVETNL QPEVPGFKQL
410 420 430 440 450
LSIIKKDSEK HIEVELRKFL AKSTPAFHTI IGDLVAGLVG RCKAEPSFYP
460 470 480 490 500
RNCLTQLIQT HVLSYSLCPD LMEIALEHTD VQMLQLCLQQ FPDIPESTTC
510 520 530 540 550
ACLKLFLSVG DDCLRDSNIN MESVFDYSDS TQDEKKEMEE QIEIVQNGFG
560 570 580 590 600
PEDGNCSEDS QQLNDKPADT AHEPGSFPVT SCPVAPKRAA LLNAVLHSAY
610 620 630 640 650
SEPFLLPHLK DIPAKHVTLF LQYLYFLYLK CTGSATMTLP GVNPPTVSQI
660 670 680 690 700
MDWICLLLDA NFTVLLMIPE AKRLLLILYN FVKSQISIYS ELNKIAVSFR
710 720
ELQRLNREKS SRGLYSIEVL ELF
Length:723
Mass (Da):80,818
Last modified:March 1, 2003 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i2693F0730B683447
GO
Isoform 2 (identifier: Q8BJW5-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     508-527: Missing.

Note: May be due to a competing acceptor splice site.Curated
Show »
Length:703
Mass (Da):78,556
Checksum:i93DEA6465D8354F8
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti145S → A in AAH24874 (PubMed:15489334).Curated1
Sequence conflicti154V → T in AAH24874 (PubMed:15489334).Curated1
Sequence conflicti462V → E in AAH04785 (PubMed:15489334).Curated1
Sequence conflicti462V → E in AAH24874 (PubMed:15489334).Curated1
Sequence conflicti522E → K in AAH24874 (PubMed:15489334).Curated1
Sequence conflicti565D → N in AAH04785 (PubMed:15489334).Curated1
Sequence conflicti565D → N in AAH24874 (PubMed:15489334).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_015459508 – 527Missing in isoform 2. 1 PublicationAdd BLAST20

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AK038696 mRNA Translation: BAC30102.1
AK076704 mRNA Translation: BAC36450.1
AK078524 mRNA Translation: BAC37323.1
BC004785 mRNA Translation: AAH04785.1
BC024874 mRNA Translation: AAH24874.1

The Consensus CDS (CCDS) project

More...
CCDSi
CCDS25566.1 [Q8BJW5-1]
CCDS48965.1 [Q8BJW5-2]

NCBI Reference Sequences

More...
RefSeqi
NP_001154801.1, NM_001161329.1 [Q8BJW5-2]
NP_598463.2, NM_133702.2 [Q8BJW5-1]

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENSMUST00000018577; ENSMUSP00000018577; ENSMUSG00000018433 [Q8BJW5-1]
ENSMUST00000106757; ENSMUSP00000102368; ENSMUSG00000018433 [Q8BJW5-2]

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
68979

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
mmu:68979

UCSC genome browser

More...
UCSCi
uc007mah.2, mouse [Q8BJW5-1]
uc007maj.2, mouse [Q8BJW5-2]

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK038696 mRNA Translation: BAC30102.1
AK076704 mRNA Translation: BAC36450.1
AK078524 mRNA Translation: BAC37323.1
BC004785 mRNA Translation: AAH04785.1
BC024874 mRNA Translation: AAH24874.1
CCDSiCCDS25566.1 [Q8BJW5-1]
CCDS48965.1 [Q8BJW5-2]
RefSeqiNP_001154801.1, NM_001161329.1 [Q8BJW5-2]
NP_598463.2, NM_133702.2 [Q8BJW5-1]

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

BioGRIDi213155, 1 interactor
IntActiQ8BJW5, 1 interactor
MINTiQ8BJW5
STRINGi10090.ENSMUSP00000102368

PTM databases

PhosphoSitePlusiQ8BJW5

Proteomic databases

EPDiQ8BJW5
PaxDbiQ8BJW5
PeptideAtlasiQ8BJW5
PRIDEiQ8BJW5
ProteomicsDBi293871 [Q8BJW5-1]
293872 [Q8BJW5-2]

Protocols and materials databases

Antibodypedia a portal for validated antibodies

More...
Antibodypediai
19207, 36 antibodies

Genome annotation databases

EnsembliENSMUST00000018577; ENSMUSP00000018577; ENSMUSG00000018433 [Q8BJW5-1]
ENSMUST00000106757; ENSMUSP00000102368; ENSMUSG00000018433 [Q8BJW5-2]
GeneIDi68979
KEGGimmu:68979
UCSCiuc007mah.2, mouse [Q8BJW5-1]
uc007maj.2, mouse [Q8BJW5-2]

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
25926
MGIiMGI:1916229, Nol11

Phylogenomic databases

eggNOGiENOG502SB74, Eukaryota
GeneTreeiENSGT00390000009760
HOGENOMiCLU_025196_0_0_1
InParanoidiQ8BJW5
OMAiWSDKRIF
OrthoDBi570601at2759
PhylomeDBiQ8BJW5
TreeFamiTF325877

Enzyme and pathway databases

ReactomeiR-MMU-6791226, Major pathway of rRNA processing in the nucleolus and cytosol

Miscellaneous databases

BioGRID ORCS database of CRISPR phenotype screens

More...
BioGRID-ORCSi
68979, 22 hits in 51 CRISPR screens

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

More...
ChiTaRSi
Nol11, mouse

Protein Ontology

More...
PROi
PR:Q8BJW5
RNActiQ8BJW5, protein

The Stanford Online Universal Resource for Clones and ESTs

More...
SOURCEi
Search...

Gene expression databases

BgeeiENSMUSG00000018433, Expressed in dorsal pancreas and 290 other tissues
GenevisibleiQ8BJW5, MM

Family and domain databases

InterProiView protein in InterPro
IPR042859, NOL11
IPR012584, NUC205
PANTHERiPTHR15633, PTHR15633, 1 hit
PfamiView protein in Pfam
PF08168, NUC205, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiNOL11_MOUSE
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q8BJW5
Secondary accession number(s): Q8BGJ1, Q8R3Q3, Q99KA5
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: August 30, 2005
Last sequence update: March 1, 2003
Last modified: April 7, 2021
This is version 116 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
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