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UniProtKB - Q8BI79 (CCD40_MOUSE)

Entry version 125 (23 Feb 2022)
Sequence version 1 (01 Mar 2003)
Previous versions | rss
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Protein

Coiled-coil domain-containing protein 40

Gene

Ccdc40

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Required for assembly of dynein regulatory complex (DRC) and inner dynein arm (IDA) complexes, which are responsible for ciliary beat regulation, thereby playing a central role in motility in cilia and flagella. Probably acts together with CCDC39 to form a molecular ruler that determines the 96 nanometer (nm) repeat length and arrangements of components in cilia and flagella. Not required for outer dynein arm complexes assembly. Required for axonemal recruitment of CCDC39.

By similarity

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

Complete GO annotation on QuickGO ...

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Coiled-coil domain-containing protein 40Curated
Alternative name(s):
Protein links1 Publication
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Ccdc40Imported
Synonyms:Lnks1 Publication
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMus musculus (Mouse)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10090 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Myomorpha › Muroidea › Muridae › Murinae › Mus › Mus
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000589 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 11

Organism-specific databases

Mouse genome database (MGD) from Mouse Genome Informatics (MGI)

More...MGIi		MGI:2443893, Ccdc40

Eukaryotic Pathogen, Vector and Host Database Resources

More...VEuPathDBi		HostDB:ENSMUSG00000039963

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Cell projection, Cilium, Cytoplasm

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This subsection of the 'Pathology and Biotech' section describes the in vivo effects caused by ablation of the gene (or one or more transcripts) coding for the protein described in the entry. This includes gene knockout and knockdown, provided experiments have been performed in the context of a whole organism or a specific tissue, and not at the single-cell level.<p><a href='/help/disruption_phenotype' target='_top'>More...</a></p>Disruption phenotypei

Defects are the cause of the lnks phenotype, a phenotype related to primary ciliary dyskinesia (PCD). PCD is characterized by recurrent respiratory infections, situs inversus and ciliary immotility and hydrocephalus. The length of the cilia projecting from the nodal pit cells in mutants is drastically reduced.1 Publication

Keywords - Diseasei

Ciliopathy, Primary ciliary dyskinesia

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003052511 – 1192Coiled-coil domain-containing protein 40Add BLAST1192

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei306PhosphoserineCombined sources1

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQB - The MaxQuant DataBase

More...MaxQBi		Q8BI79

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		Q8BI79

PRoteomics IDEntifications database

More...PRIDEi		Q8BI79

ProteomicsDB: a multi-organism proteome resource

More...ProteomicsDBi		283729 [Q8BI79-1]
283730 [Q8BI79-2]
283731 [Q8BI79-3]

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...iPTMneti		Q8BI79

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...PhosphoSitePlusi		Q8BI79

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the 'Expression' section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified 'at protein level'.<br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Specifically expressed in the embryonic node and midline.1 Publication

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...Bgeei		ENSMUSG00000039963, Expressed in metencephalon part of 4th ventricle choroid plexus (mouse) and 127 other tissues

ExpressionAtlas, Differential and Baseline Expression

More...ExpressionAtlasi		Q8BI79, baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...Genevisiblei		Q8BI79, MM

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		10090.ENSMUSP00000039463

Miscellaneous databases

RNAct, Protein-RNA interaction predictions for model organisms.

More...RNActi		Q8BI79, protein

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		Q8BI79

Database of comparative protein structure models

More...ModBasei		Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 78DisorderedSequence analysisAdd BLAST78
Regioni126 – 153DisorderedSequence analysisAdd BLAST28
Regioni173 – 196DisorderedSequence analysisAdd BLAST24
Regioni211 – 246DisorderedSequence analysisAdd BLAST36
Regioni261 – 289DisorderedSequence analysisAdd BLAST29

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili308 – 369Sequence analysisAdd BLAST62
Coiled coili425 – 451Sequence analysisAdd BLAST27
Coiled coili581 – 649Sequence analysisAdd BLAST69
Coiled coili733 – 768Sequence analysisAdd BLAST36
Coiled coili830 – 871Sequence analysisAdd BLAST42
Coiled coili919 – 972Sequence analysisAdd BLAST54
Coiled coili1044 – 1118Sequence analysisAdd BLAST75

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular type of amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi54 – 68Polar residuesSequence analysisAdd BLAST15

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the CCDC40 family.Curated

Keywords - Domaini

Coiled coil

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		ENOG502QQ91, Eukaryota

Ensembl GeneTree

More...GeneTreei		ENSGT00440000035688

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_008826_0_0_1

InParanoid: Eukaryotic Ortholog Groups

More...InParanoidi		Q8BI79

Database of Orthologous Groups

More...OrthoDBi		323186at2759

Database for complete collections of gene phylogenies

More...PhylomeDBi		Q8BI79

TreeFam database of animal gene trees

More...TreeFami		TF325559

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR037386, CCDC40

The PANTHER Classification System

More...PANTHERi		PTHR16275, PTHR16275, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (3+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 3 <p>This subsection of the 'Sequence' section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 3 described isoforms and 2 potential isoforms that are computationally mapped.Show allAlign All

Isoform 1 (identifier: Q8BI79-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the <p><strong>What is the canonical sequence?</strong><p><a href='/help/canonical_and_isoforms' target='_top'>More...</a></p>canonicali sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MMDAEKVSTD GEAISEGEVG SNGETPPETE VEFIGETAPD TDVEFIGETS 
        60         70         80         90        100
PGTDVEPTGE SIQETEVESI GEATPGMDVE PIKKTMTELN VESIGEETSE 
       110        120        130        140        150
TDVDSIRKAL RGIDLESITV AYPPKKAKHR KVRPQAEVES TGRAAPEGEL 
       160        170        180        190        200
EVSDHEKVEA LLDELDELSE IVSSPEVSYS DISPLEMGED DTNVSATSTD 
       210        220        230        240        250
TFQQGIYEPI EPIEPTEPPE PAEPPKPAET PEDSTVRAPA HPYQRDFPMG 
       260        270        280        290        300
ARHRFRLSIM GSLTPSDTDD LPLETDEPPQ QESVQSTPRA LEETRIQFLD 
       310        320        330        340        350
QVQSLSPEAL LDRATEGSDE AEEEGSQLIV LDPDHPLMIR FQEALKGYLN 
       360        370        380        390        400
RQMDKLKLDV QELDVATKQT RSQRQELGVN LYGVQQHLAR LQMQLEKSHD 
       410        420        430        440        450
RHSLVACERR RKEEELQCAR SVYNKTCQTA NEERKKLAAL QTEVESLALH 
       460        470        480        490        500
LFYMQNIEQD VRDDIQVMKQ VVRKTETEKM HAEVEKKKQD LFVDQLTERS 
       510        520        530        540        550
HQLEENIALF EAQYLSQAED TRVLKKAVTE AITEIDTIAV EKKRILQQWT 
       560        570        580        590        600
TSLVGMKHRN EAYKTVMDAL RECQHQVKST DSEIEVCKKS IMQEEEKNEK 
       610        620        630        640        650
LARLLNRAET EATLVQKMTA QCLSKQEALQ TEFNTYQLAL QDTEEMLNKG 
       660        670        680        690        700
YVEHSAVLSE LQATRQAFHQ EQELRQKMDM SMVDKLQEQG TSSKMTKYFH 
       710        720        730        740        750
QLLRKLQKEN TNLVTHLSKI DGDIAQATLD ITNTNCKIDM HKKTLAEMDK 
       760        770        780        790        800
EVKRFNDLIT NSESEIARRT ILIERKQSLI NFFNKQLEQM VSELGGEEAG 
       810        820        830        840        850
PLELEIKRLS KLTEEYNTGV AEAQMTWLRL QQELVQVTHE REEQLVSVDQ 
       860        870        880        890        900
LKKEVHIMEQ KKLRIESKIA HEKKEQKIVS RHMRDLDNDL SKLNMLLDKN 
       910        920        930        940        950
RCSSEELEQN NIATETEFLR TLKDSERETI QMQEKLMELS EEKATLLNSF 
       960        970        980        990       1000
MEAEHQIMLW EKKIQLAKEM RSSVDSETGQ TEIRAMKAEI HRMKVRHGQL 
      1010       1020       1030       1040       1050
LKQQEKMIRD MELAVARRET IVVQAEGQSK IDKKVITKTE FHYQQRELQK 
      1060       1070       1080       1090       1100
KVREMHKATD DCTNTISELE ETQKFLSSSL QEKQQLLSEM QATTDVLEEE 
      1110       1120       1130       1140       1150
INQLTALKRQ NLLEIVTLQT RGKHLQAAIE GKYVFLHRNS RSQLMERKRL 
      1160       1170       1180       1190 
SVRLSQLNKV LSSVQEDYPQ YQEVLQSIQQ KIATKLETPE PS
Length:1,192
Mass (Da):136,772
Last modified:March 1, 2003 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iA3BBC5ABA0183A3A
GO
Isoform 2 (identifier: Q8BI79-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-1: M → MAEPEDQADGRSQQEGQQSSAEEDSEQQYTEGPEVSPQLEDNGQEIDEGRDPTRSPEEDITTEGGGGSEGEM
     744-810: Missing.

Show »
Length:1,196
Mass (Da):136,663
Checksum:i9B1C9EC4B65443FA
GO
Isoform 3 (identifier: Q8BI79-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-1: M → MAEPEDQADGSQQEGQQSSAEEDSEQQYTEGPEVSPQLEDNGQEIDEGRDPTRSPEEDITTEGGGGSEGEM
     1058-1067: ATDDCTNTIS → FIFSLLRVCG
     1068-1192: Missing.

Show »
Length:1,137
Mass (Da):129,847
Checksum:i74B401B280D2F730
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A494BAF9A0A494BAF9_MOUSE
Coiled-coil domain-containing prote...
Ccdc40
1,262Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A494BAV6A0A494BAV6_MOUSE
Coiled-coil domain-containing prote...
Ccdc40
47Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

<p>This subsection of the 'Sequence' section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAH85159 differs from that shown. Reason: Erroneous initiation. Truncated N-terminus.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti88E → K in AAH85159 (PubMed:15489334).Curated1
Sequence conflicti292E → K in BAC35680 (PubMed:16141072).Curated1
Sequence conflicti803E → Q in BAC35680 (PubMed:16141072).Curated1
Sequence conflicti845L → M in BAC35680 (PubMed:16141072).Curated1
Sequence conflicti866E → Q in BAC35680 (PubMed:16141072).Curated1
Sequence conflicti884R → G in BAC35680 (PubMed:16141072).Curated1
Sequence conflicti940S → A in AAH85159 (PubMed:15489334).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_0283101M → MAEPEDQADGRSQQEGQQSS AEEDSEQQYTEGPEVSPQLE DNGQEIDEGRDPTRSPEEDI TTEGGGGSEGEM in isoform 2. 1 Publication1
Alternative sequenceiVSP_0283111M → MAEPEDQADGSQQEGQQSSA EEDSEQQYTEGPEVSPQLED NGQEIDEGRDPTRSPEEDIT TEGGGGSEGEM in isoform 3. 1 Publication1
Alternative sequenceiVSP_028312744 – 810Missing in isoform 2. 1 PublicationAdd BLAST67
Alternative sequenceiVSP_0283131058 – 1067ATDDCTNTIS → FIFSLLRVCG in isoform 3. 1 Publication10
Alternative sequenceiVSP_0283141068 – 1192Missing in isoform 3. 1 PublicationAdd BLAST125

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AK046971 mRNA Translation: BAC32932.1
AK054172 mRNA Translation: BAC35680.1
AL672140 Genomic DNA No translation available.
BC085159 mRNA Translation: AAH85159.1 Different initiation.

NCBI Reference Sequences

More...RefSeqi		NP_780639.1, NM_175430.4

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...Ensembli		ENSMUST00000053440; ENSMUSP00000062198; ENSMUSG00000039963 [Q8BI79-3]

UCSC genome browser

More...UCSCi		uc007mqc.1, mouse [Q8BI79-1]
uc007mqe.1, mouse [Q8BI79-3]

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK046971 mRNA Translation: BAC32932.1
AK054172 mRNA Translation: BAC35680.1
AL672140 Genomic DNA No translation available.
BC085159 mRNA Translation: AAH85159.1 Different initiation.
RefSeqiNP_780639.1, NM_175430.4

3D structure databases

SMRiQ8BI79
ModBaseiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000039463

PTM databases

iPTMnetiQ8BI79
PhosphoSitePlusiQ8BI79

Proteomic databases

MaxQBiQ8BI79
PaxDbiQ8BI79
PRIDEiQ8BI79
ProteomicsDBi283729 [Q8BI79-1]
283730 [Q8BI79-2]
283731 [Q8BI79-3]

Genome annotation databases

EnsembliENSMUST00000053440; ENSMUSP00000062198; ENSMUSG00000039963 [Q8BI79-3]
UCSCiuc007mqc.1, mouse [Q8BI79-1]
uc007mqe.1, mouse [Q8BI79-3]

Organism-specific databases

MGIiMGI:2443893, Ccdc40
VEuPathDBiHostDB:ENSMUSG00000039963

Phylogenomic databases

eggNOGiENOG502QQ91, Eukaryota
GeneTreeiENSGT00440000035688
HOGENOMiCLU_008826_0_0_1
InParanoidiQ8BI79
OrthoDBi323186at2759
PhylomeDBiQ8BI79
TreeFamiTF325559

Miscellaneous databases

BioGRID ORCS database of CRISPR phenotype screens

More...BioGRID-ORCSi		207607, 5 hits in 64 CRISPR screens

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

More...ChiTaRSi		Ccdc40, mouse

Protein Ontology

More...PROi		PR:Q8BI79
RNActiQ8BI79, protein

The Stanford Online Universal Resource for Clones and ESTs

More...SOURCEi		Search...

Gene expression databases

BgeeiENSMUSG00000039963, Expressed in metencephalon part of 4th ventricle choroid plexus (mouse) and 127 other tissues
ExpressionAtlasiQ8BI79, baseline and differential
GenevisibleiQ8BI79, MM

Family and domain databases

InterProiView protein in InterPro
IPR037386, CCDC40
PANTHERiPTHR16275, PTHR16275, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiCCD40_MOUSE
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q8BI79
Secondary accession number(s): A2AFL0, Q5U4C0, Q8BI59
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 2, 2007
Last sequence update: March 1, 2003
Last modified: February 23, 2022
This is version 125 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families
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