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Protein

Pre-mRNA-splicing factor syf2

Gene

syf2

Organism
Xenopus laevis (African clawed frog)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Involved in pre-mRNA splicing as component of the spliceosome.By similarity

GO - Biological processi

Keywordsi

Biological processmRNA processing, mRNA splicing

Names & Taxonomyi

Protein namesi
Recommended name:
Pre-mRNA-splicing factor syf2
Gene namesi
Name:syf2
OrganismiXenopus laevis (African clawed frog)
Taxonomic identifieri8355 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusXenopus

Organism-specific databases

XenbaseiXB-GENE-920851 syf2

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus, Spliceosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002503811 – 240Pre-mRNA-splicing factor syf2Add BLAST240

Interactioni

Subunit structurei

Identified in the spliceosome C complex.By similarity

Structurei

3D structure databases

SMRiQ8AVQ6
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili63 – 91Sequence analysisAdd BLAST29

Sequence similaritiesi

Belongs to the SYF2 family.Curated

Keywords - Domaini

Coiled coil

Phylogenomic databases

HOVERGENiHBG080129
KOiK12868

Family and domain databases

InterProiView protein in InterPro
IPR013260 mRNA_splic_SYF2
PANTHERiPTHR13264 PTHR13264, 1 hit
PfamiView protein in Pfam
PF08231 SYF2, 1 hit

Sequencei

Sequence statusi: Complete.

Q8AVQ6-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MDKEKAEVSP EEESAPASAE DLAAQKREAR LRKFRELHLK TNEARKLNHQ
60 70 80 90 100
EVVEEDKRQK LPSNWEARKA RLEWELKNEE KKRECAANGV DFERAKLLEI
110 120 130 140 150
SAEDAERWER KKKRKNPDLG FSDYAAAQLR QYQRLTKQIK PDMEEYEMEK
160 170 180 190 200
EKQGELFYPT SDSLYHGTHV PSQSGIDRMV TDLEKQIEKR EKYSRRRAYN
210 220 230 240
DDADIDYINE RNAKFNKKAE RFYGKYTAEI KQNLERGTAV
Length:240
Mass (Da):28,477
Last modified:March 1, 2003 - v1
Checksum:iDD241F8949EBD50C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC041520 mRNA Translation: AAH41520.1
RefSeqiNP_001079405.1, NM_001085936.1
UniGeneiXl.77406

Genome annotation databases

GeneIDi379092
KEGGixla:379092

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC041520 mRNA Translation: AAH41520.1
RefSeqiNP_001079405.1, NM_001085936.1
UniGeneiXl.77406

3D structure databases

SMRiQ8AVQ6
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi379092
KEGGixla:379092

Organism-specific databases

CTDi379092
XenbaseiXB-GENE-920851 syf2

Phylogenomic databases

HOVERGENiHBG080129
KOiK12868

Family and domain databases

InterProiView protein in InterPro
IPR013260 mRNA_splic_SYF2
PANTHERiPTHR13264 PTHR13264, 1 hit
PfamiView protein in Pfam
PF08231 SYF2, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiSYF2_XENLA
AccessioniPrimary (citable) accession number: Q8AVQ6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: September 19, 2006
Last sequence update: March 1, 2003
Last modified: April 25, 2018
This is version 42 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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