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UniProtKB - Q8A6W3 (Q8A6W3_BACTN)

Entry version 124 (19 Jan 2022)
Sequence version 1 (01 Jun 2003)
Previous versions | rss
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Protein
Submitted name:

SusC homolog

Gene

BT_1763

Organism
Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section indicates at which position the protein binds a given metal ion. The nature of the metal is indicated in the 'Description' field.<p><a href='/help/metal' target='_top'>More...</a></p>Metal bindingi862MagnesiumCombined sources1
Metal bindingi864MagnesiumCombined sources1
Metal bindingi866MagnesiumCombined sources1
Metal bindingi868Magnesium; via carbonyl oxygenCombined sources1
Metal bindingi873MagnesiumCombined sources1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

LigandMagnesiumCombined sources, Metal-bindingCombined sources

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...BioCyci		BTHE:G13PU-6698-MONOMER

Protein family/group databases

Transport Classification Database

More...TCDBi		1.B.14.6.17, the outer membrane receptor (omr) family

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
SusC homologImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:BT_1763Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiBacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri226186 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Bacteroidetes › Bacteroidia › Bacteroidales › Bacteroidaceae › Bacteroides ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001414 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Keywords - Cellular componenti

Cell outer membraneARBA annotation, Membrane

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 25Sequence analysisAdd BLAST25
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_500430294526 – 1041Sequence analysisAdd BLAST1016

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		Q8A6W3

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		226186.BT_1763

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		Q8A6W3

Database of comparative protein structure models

More...ModBasei		Search...

Protein Data Bank in Europe - Knowledge Base

More...PDBe-KBi		Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini119 – 224PlugInterPro annotationAdd BLAST106
Domaini426 – 1039TonB_dep_RecInterPro annotationAdd BLAST614

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the TonB-dependent receptor family.UniRule annotation

Keywords - Domaini

SignalSequence analysis, TonB boxUniRule annotationARBA annotation

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		COG1629, Bacteria

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_004317_0_2_10

Identification of Orthologs from Complete Genome Data

More...OMAi		PAGDTDW

Family and domain databases

Database of protein disorder

More...DisProti		DP02506

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		2.170.130.10, 1 hit
2.40.170.20, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR008969, CarboxyPept-like_regulatory
IPR012910, Plug_dom
IPR037066, Plug_dom_sf
IPR023996, TonB-dep_OMP_SusC/RagA
IPR023997, TonB-dep_OMP_SusC/RagA_CS
IPR000531, TonB-dep_rcpt_b-brl
IPR036942, TonB_rcpt_b-brl_sf

Pfam protein domain database

More...Pfami		View protein in Pfam
PF07715, Plug, 1 hit
PF00593, TonB_dep_Rec, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF49464, SSF49464, 1 hit

TIGRFAMs; a protein family database

More...TIGRFAMsi		TIGR04056, OMP_RagA_SusC, 1 hit
TIGR04057, SusC_RagA_signa, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q8A6W3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MPGIMKNKKL LCSVCFLFAF MSALWGQNIT VKGNVTSKTD GQPIIGASVV 
        60         70         80         90        100
ETTATTNGTI TDFDGNFTLS VPVNSTLKIT YIGYKPVTVK AAAIVNVLLE 
       110        120        130        140        150
EDTQMVDEVV VTGYTTQRKA DLTGAVSVVK VDEIQKQGEN NPVKALQGRV 
       160        170        180        190        200
PGMNITADGN PSGSATVRIR GIGTLNNNDP LYIIDGVPTK AGMHELNGND 
       210        220        230        240        250
IESIQVLKDA ASASIYGSRA ANGVIIITTK QGKKGQIKIN FDASVSASMY 
       260        270        280        290        300
QSKMNVLNTE QYGRAMWQAY VNDGENPNGN ALGYAYNWGY NADGNPVLYG 
       310        320        330        340        350
MTLSKYLDSK NTMPVADTDW FDEITRTGVI QQYNLSVSNG SEKGSSFFSL 
       360        370        380        390        400
GYYKNLGVIK DTDFDRFSAR MNSDYKLIDD ILTIGQHFTL NRTSEVQAPG 
       410        420        430        440        450
GIIETALDIP SAIPVYASDG SWGGPVGGWP DRRNPRAVLE YNKDNRYTYW 
       460        470        480        490        500
RMFGDAYVNL TPFKGFNLRS TFGLDYANKQ ARYFTYPYQE GTQTNNGKSA 
       510        520        530        540        550
VEAKQEHWTK WMWNAIATYQ LEVGKHRGDV MIGMELNRED DSHFSGYKED 
       560        570        580        590        600
FSILTPDYMW PDAGSGTAQA YGAGEGYSLV SFFGKMNYSY ADRYLLSLTL 
       610        620        630        640        650
RRDGSSRFGK NHRYATFPSV SLGWRITQEN FMKELTWLDD LKLRASWGQT 
       660        670        680        690        700
GNQEISNLAR YTIYAPNYGT TDSFGGQSYG TAYDITGSNG GGVLPSGFKR 
       710        720        730        740        750
NQIGNDNIKW ETTTQTNVGI DFSLFKQSLY GSLEYYYKKA TDILTEMAGV 
       760        770        780        790        800
GVLGEGGSRW INSGAMKNQG FEFNLGYRNK TAFGLTYDLN GNISTYRNEI 
       810        820        830        840        850
LELPETVAAN GKFGGNGVKS VVGHTYGAQV GYIADGIFKS QDEVDNHATQ 
       860        870        880        890        900
EGAAVGRIRY RDIDHNGVID ERDQNWIYDP TPSFSYGLNI YLEYKNFDLT 
       910        920        930        940        950
MFWQGVQGVD IISDVKKKSD FWSASNVGFL NKGTRLLNAW SPTNPNSDIP 
       960        970        980        990       1000
ALTRSDTNNE QRVSTYFVEN GSFLKLRNIQ LGYTVPAVIS KKMRMDRLRF 
      1010       1020       1030       1040 
YCSAQNLLTI KSKNFTGEDP ENPNFSYPIP VNITFGLNIG F
Length:1,041
Mass (Da):115,376
Last modified:June 1, 2003 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i2D35022E8F1D0D19
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AE015928 Genomic DNA Translation: AAO76870.1

NCBI Reference Sequences

More...RefSeqi		NP_810676.1, NC_004663.1
WP_011107964.1, NC_004663.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		AAO76870; AAO76870; BT_1763

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		bth:BT_1763

Pathosystems Resource Integration Center (PATRIC)

More...PATRICi		fig|226186.12.peg.1810

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE015928 Genomic DNA Translation: AAO76870.1
RefSeqiNP_810676.1, NC_004663.1
WP_011107964.1, NC_004663.1

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...PDBei

Protein Data Bank RCSB

More...RCSB PDBi

Protein Data Bank Japan

More...PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
5T3RX-ray3.10D1-1041[»]
5T4YX-ray3.10C/D1-1041[»]
6YTCNMR-A32-115[»]
6Z8IX-ray2.62B1-1041[»]
6Z9AX-ray3.10B1-1041[»]
6ZAZX-ray2.69B1-1041[»]
6ZLTelectron microscopy3.90B109-1041[»]
6ZLUelectron microscopy4.20B1-1041[»]
6ZM1electron microscopy4.70B/D1-1041[»]
SMRiQ8A6W3
ModBaseiSearch...
PDBe-KBiSearch...

Protein-protein interaction databases

STRINGi226186.BT_1763

Protein family/group databases

TCDBi1.B.14.6.17, the outer membrane receptor (omr) family

Proteomic databases

PaxDbiQ8A6W3

Protocols and materials databases

The DNASU plasmid repository

More...DNASUi		1075316

Genome annotation databases

EnsemblBacteriaiAAO76870; AAO76870; BT_1763
KEGGibth:BT_1763
PATRICifig|226186.12.peg.1810

Phylogenomic databases

eggNOGiCOG1629, Bacteria
HOGENOMiCLU_004317_0_2_10
OMAiPAGDTDW

Enzyme and pathway databases

BioCyciBTHE:G13PU-6698-MONOMER

Family and domain databases

DisProtiDP02506
Gene3Di2.170.130.10, 1 hit
2.40.170.20, 1 hit
InterProiView protein in InterPro
IPR008969, CarboxyPept-like_regulatory
IPR012910, Plug_dom
IPR037066, Plug_dom_sf
IPR023996, TonB-dep_OMP_SusC/RagA
IPR023997, TonB-dep_OMP_SusC/RagA_CS
IPR000531, TonB-dep_rcpt_b-brl
IPR036942, TonB_rcpt_b-brl_sf
PfamiView protein in Pfam
PF07715, Plug, 1 hit
PF00593, TonB_dep_Rec, 1 hit
SUPFAMiSSF49464, SSF49464, 1 hit
TIGRFAMsiTIGR04056, OMP_RagA_SusC, 1 hit
TIGR04057, SusC_RagA_signa, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ8A6W3_BACTN
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q8A6W3
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: January 19, 2022
This is version 124 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Reference proteomeImported
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