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UniProtKB - Q88PD6 (Q88PD6_PSEPK)
Protein
Submitted name:
GGDEF domain protein
Gene
PP_0914
Organism
Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)
Status
Names & Taxonomyi
Protein namesi | Submitted name: GGDEF domain proteinImported |
Gene namesi | Ordered Locus Names:PP_0914Imported |
Organismi | Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)Imported |
Taxonomic identifieri | 160488 [NCBI] |
Taxonomic lineagei | Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas › |
Proteomesi |
|
Subcellular locationi
Other locations
- integral component of membrane Source: UniProtKB-KW
Topology
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Transmembranei | 23 – 45 | HelicalSequence analysisAdd BLAST | 23 | |
Transmembranei | 163 – 189 | HelicalSequence analysisAdd BLAST | 27 |
Keywords - Cellular componenti
MembraneStructurei
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 290 – 423 | GGDEFInterPro annotationAdd BLAST | 134 | |
Domaini | 432 – 686 | EALInterPro annotationAdd BLAST | 255 |
Keywords - Domaini
Transmembrane, Transmembrane helixSequence analysisPhylogenomic databases
eggNOGi | COG5001, Bacteria |
HOGENOMi | CLU_000445_70_46_6 |
OMAi | DREMGMQ |
PhylomeDBi | Q88PD6 |
Family and domain databases
CDDi | cd01948, EAL, 1 hit cd01949, GGDEF, 1 hit |
Gene3Di | 3.20.20.450, 1 hit 3.30.70.270, 1 hit |
InterProi | View protein in InterPro IPR001633, EAL_dom IPR035919, EAL_sf IPR000160, GGDEF_dom IPR029787, Nucleotide_cyclase IPR043128, Rev_trsase/Diguanyl_cyclase |
Pfami | View protein in Pfam PF00563, EAL, 1 hit PF00990, GGDEF, 1 hit |
SMARTi | View protein in SMART SM00052, EAL, 1 hit SM00267, GGDEF, 1 hit |
SUPFAMi | SSF141868, SSF141868, 1 hit SSF55073, SSF55073, 1 hit |
TIGRFAMsi | TIGR00254, GGDEF, 1 hit |
PROSITEi | View protein in PROSITE PS50883, EAL, 1 hit PS50887, GGDEF, 1 hit |
i Sequence
Sequence statusi: Complete.
Q88PD6-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MPCAWIKETP LKLELRNSLS VKLLRVVLLS ALAVGVVLSC AQIIYDTYKT
60 70 80 90 100
RQAVDSDAQR ILDMFRDPST QAVYSLDREM GMQVMEGLFQ DESVRMASIG
110 120 130 140 150
HPNETMLAEK SRPLQDMSMR WLTDLILGQE RTYTTQLVGR GPYSEYYGDL
160 170 180 190 200
SITLDTSSYG KDFLINAVII FISGVLRAMA MGLVLYLVYH WLLTKPLSKI
210 220 230 240 250
IEHLTQINPD RPSQHQIPLL KGHEKNELGL WVNTANQLLA SIERNTHLRH
260 270 280 290 300
EAENSLQRMA QYDFLTGLPN RQQLQQQLDK ILVDGGRLQH RVAVLCVGLD
310 320 330 340 350
DFKGINEQFS YQVGDQLLLA LADRLRAHSG RLGALARLGG DQFALVQANI
360 370 380 390 400
EQPYEAAELA QSILDDLEVP FDLDHEQIRL RATIGITLFP EDGDSTEKLL
410 420 430 440 450
QKAEQTMTLA KARSRNRYQF YIASVDSEMR RRRELEKDLR EALPRNQLYL
460 470 480 490 500
VYQPQISYRD HRVVGVEALL RWQHPELGMV PPDQFIPLAE QNGSIISIGE
510 520 530 540 550
WVLDQACRQL REWHDQGFSD LRMAVNLSTV QLHHSELPRV VNNLLQAYRL
560 570 580 590 600
PPRSLELEVT ETGLMEDIST AAQHLLSLRR SGALIAIDDF GTGYSSLSYL
610 620 630 640 650
KSLPLDKIKI DKSFVQDLLD DDDDATIVRA IIQLGKSLGM QVIAEGVETA
660 670 680 690
EQETYIVAQG CHEGQGYHYS KPLSARELTH FLKQAQRNRV SVS
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AE015451 Genomic DNA Translation: AAN66539.1 |
RefSeqi | NP_743075.1, NC_002947.4 |
Genome annotation databases
EnsemblBacteriai | AAN66539; AAN66539; PP_0914 |
KEGGi | ppu:PP_0914 |
PATRICi | fig|160488.4.peg.974 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AE015451 Genomic DNA Translation: AAN66539.1 |
RefSeqi | NP_743075.1, NC_002947.4 |
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Protein-protein interaction databases
STRINGi | 160488.PP_0914 |
Genome annotation databases
EnsemblBacteriai | AAN66539; AAN66539; PP_0914 |
KEGGi | ppu:PP_0914 |
PATRICi | fig|160488.4.peg.974 |
Phylogenomic databases
eggNOGi | COG5001, Bacteria |
HOGENOMi | CLU_000445_70_46_6 |
OMAi | DREMGMQ |
PhylomeDBi | Q88PD6 |
Family and domain databases
CDDi | cd01948, EAL, 1 hit cd01949, GGDEF, 1 hit |
Gene3Di | 3.20.20.450, 1 hit 3.30.70.270, 1 hit |
InterProi | View protein in InterPro IPR001633, EAL_dom IPR035919, EAL_sf IPR000160, GGDEF_dom IPR029787, Nucleotide_cyclase IPR043128, Rev_trsase/Diguanyl_cyclase |
Pfami | View protein in Pfam PF00563, EAL, 1 hit PF00990, GGDEF, 1 hit |
SMARTi | View protein in SMART SM00052, EAL, 1 hit SM00267, GGDEF, 1 hit |
SUPFAMi | SSF141868, SSF141868, 1 hit SSF55073, SSF55073, 1 hit |
TIGRFAMsi | TIGR00254, GGDEF, 1 hit |
PROSITEi | View protein in PROSITE PS50883, EAL, 1 hit PS50887, GGDEF, 1 hit |
MobiDBi | Search... |
Entry informationi
Entry namei | Q88PD6_PSEPK | |
Accessioni | Q88PD6Primary (citable) accession number: Q88PD6 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | June 1, 2003 |
Last sequence update: | June 1, 2003 | |
Last modified: | September 29, 2021 | |
This is version 92 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |