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UniProtKB - Q88528 (Q88528_9ALPH)

Entry version 45 (07 Oct 2020)
Sequence version 1 (01 Nov 1996)
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Protein
Submitted name:

Major capsid protein

Gene

UL19h

Organism
Gallid alphaherpesvirus 2
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Major capsid proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:UL19hImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiGallid alphaherpesvirus 2Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10390 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiViruses › Duplodnaviria › Heunggongvirae › Peploviricota › Herviviricetes › Herpesvirales › Herpesviridae › Alphaherpesvirinae › Mardivirus

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

GO - Cellular componenti

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Capsid protein, T=16 icosahedral capsid proteinARBA annotation, Virion

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili723 – 743Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR000912, Herpes_MCP
IPR023233, Herpes_MCP_upper_sf

Pfam protein domain database

More...Pfami		View protein in Pfam
PF03122, Herpes_MCP, 1 hit

Protein Motif fingerprint database; a protein domain database

More...PRINTSi		PR00235, HSVCAPSIDMCP

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF103417, SSF103417, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q88528-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKFVFCLNVS HRTNSIGDYG MPISPARDCP PTGVVCFSPL FNIGSTLAPT 
        60         70         80         90        100
GRLLTTIEMS SHRCMFDYFK QFSSDDDGRY TAQFDILLGT YCNTLSLIRF 
       110        120        130        140        150
LETGLSVACI CNGGAPDLMY MREGTVQFEI QQPMIAREGP HPADQPVHNY 
       160        170        180        190        200
MVKRVCRRSL NAAFVVAAEA LALLSEVSLD GTAISKHLRM RAIQQLARNV 
       210        220        230        240        250
RRSLTPSNGG TVDQMLRILL EKAPPRTLLI PLSHALSEGR TNSQVMRANL 
       260        270        280        290        300
VSELKRRVCV ETFIMSKPDK PRKYPVVYRT NGKLYPTDNL YAETNPCRFK 
       310        320        330        340        350
GQTSRRCVGD HRNGEAKTII RNSKVSDTSA RVPVTYGEMI ISGTNLVTVV 
       360        370        380        390        400
VMGKAVRNMD DVARYILNLR EDEVMNGTDK VIEGDSDRLQ MADVPAELVV 
       410        420        430        440        450
VGDKLIFLEA LERRVYQATQ VRYPLIGYVD LTFIIPLGIY QRISERYARH 
       460        470        480        490        500
AGDYAAGVGS GGDIRNFAPR DIYFYNKDNQ LICLTLADAI GTVCHPSFLD 
       510        520        530        540        550
IEATVNHLRS GRYELTCTLG AYVTNPPALP LMDRARQFFE NVGEMMREFP 
       560        570        580        590        600
RWVEECQMTT EQFMSTGNEN LFMELHPAFD FFVIPGDVDL PGPHNIPQVM 
       610        620        630        640        650
ASAEASWRVC NGNIPLPLCN TDFRDALGRE LSSTRYKLSD STVSALSDTF 
       660        670        680        690        700
ADSSYPTAFY IIEAVIHGSE RNFGLLMRLV IQCIRSYWDN SKRVAFINNF 
       710        720        730        740        750
HMVAYIEAYL CSGELPEECM NIYKELMRHV RALRSLVQDY TEQTDSLYEQ 
       760        770        780        790        800
SHDELNHVSI DRTVLPPLLW DCDPLIYRTR GIRDRELYLK RRWGRKLHRP 
       810        820        830        840        850
PLAGIARCRL QSHQANVLVH NRPVRDIDRQ AFVPHHSQEW TILSKIYYYV 
       860        870        880        890        900
VVPAFSRGQC CTMGIRFDNI YATSQAVIIP EVHSDEEPPI DPEDPRHPLN 
       910        920        930        940        950
GRNLIPNTFN VLLHNARISA DADALLTLQE TVNNMAERTT AILYATTPDI 
       960        970        980        990       1000
GGASASTRRM RTFDGALHMA FLVWLIRATT RRSWREHIFI PCTTSMLSSH 
      1010       1020       1030       1040       1050
ALIIWRQSVR PLPGNIRTIC ERAPPVPSFL GANYYSTFRQ PLAQYVKRSR 
      1060       1070       1080       1090       1100
CGPNEMSYAL MSGYFKLSPL GLYHQLRTGL HPGIAFTVIR QDRFLADMGL 
      1110       1120       1130       1140       1150
FAERASESYF LGQVSVTKRP HAGGVQFSLT QPRANVDLGV GYTAVCTPLM 
      1160       1170       1180       1190       1200
LRNAVTDMGN TAQSLHLTRG SPPLLNPEAD EFLRKVATRG QRTAPQRPVP 
      1210       1220       1230       1240       1250
FLGTLMPSLP SGLEHGQMSI CEFIPTPVSS DLEYFKTPCN PRGRAAGPIH 
      1260       1270       1280       1290       1300
SGEDMQDVDN IMYDHKQGDP AYPFRATNNP WASQRYSYAD RLYNGTYNLS 
      1310       1320       1330       1340       1350
GASPLFSPSY KFFTPAEVCS KTRCLDKLIT EAGSAPSAST SDGEIQFKRP 
      1360       1370       1380       1390       1400
VGSTELTEDP CSLFQEAYPI LCATDKALLL SYTKGTTDGS ESHLAQYLIR 
      1410 
DSSPIGGCLP TC
Length:1,412
Mass (Da):158,389
Last modified:November 1, 1996 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i954CF52BE5207C57
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
Z54369 Genomic DNA Translation: CAA91200.1

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z54369 Genomic DNA Translation: CAA91200.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Family and domain databases

InterProiView protein in InterPro
IPR000912, Herpes_MCP
IPR023233, Herpes_MCP_upper_sf
PfamiView protein in Pfam
PF03122, Herpes_MCP, 1 hit
PRINTSiPR00235, HSVCAPSIDMCP
SUPFAMiSSF103417, SSF103417, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ88528_9ALPH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q88528
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: October 7, 2020
This is version 45 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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