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Entry version 88 (29 Sep 2021)
Sequence version 1 (01 Jun 2003)
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Protein

Putative cell agglutination protein pfl3

Gene

pfl3

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

May be involved in agglutination during conjugation or other aspects of colony formation (By similarity).

Induces flocculation when overexpressed (PubMed:23236291).

By similarity1 Publication

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

  • flocculation Source: PomBase

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Putative cell agglutination protein pfl3Curated
Alternative name(s):
Adhesin pfl31 Publication
Pombe flocculin 31 Publication
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:pfl31 Publication
ORF Names:SPBC947.04Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri284812 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002485 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome II

Organism-specific databases

Schizosaccharomyces pombe database

More...
PomBasei
SPBC947.04, pfl3

Eukaryotic Pathogen, Vector and Host Database Resources

More...
VEuPathDBi
FungiDB:SPBC947.04

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 24Sequence analysisAdd BLAST24
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_000035381125 – 973Putative cell agglutination protein pfl3Add BLAST949

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm_processing_section">PTM / Processing</a> section specifies the position and type of each covalently attached glycan group (mono-, di-, or polysaccharide).<p><a href='/help/carbohyd' target='_top'>More...</a></p>Glycosylationi75N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi96N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi147N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi171N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi184N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi218N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi253N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi352N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi393N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi848N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - PTMi

Glycoprotein

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q874R4

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

More...
BioGRIDi
277751, 10 interactors

STRING: functional protein association networks

More...
STRINGi
4896.SPBC947.04.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati198 – 23211 PublicationAdd BLAST35
Repeati233 – 26721 PublicationAdd BLAST35
Repeati268 – 30231 PublicationAdd BLAST35
Repeati303 – 33741 PublicationAdd BLAST35
Repeati338 – 37251 PublicationAdd BLAST35
Repeati373 – 40761 PublicationAdd BLAST35
Repeati408 – 44271 PublicationAdd BLAST35
Repeati443 – 47781 PublicationAdd BLAST35
Repeati478 – 51291 PublicationAdd BLAST35
Repeati513 – 547101 PublicationAdd BLAST35
Repeati548 – 582111 PublicationAdd BLAST35
Repeati583 – 617121 PublicationAdd BLAST35
Repeati618 – 652131 PublicationAdd BLAST35
Repeati653 – 687141 PublicationAdd BLAST35
Repeati688 – 722151 PublicationAdd BLAST35
Repeati723 – 757161 PublicationAdd BLAST35
Repeati758 – 792171 PublicationAdd BLAST35
Repeati793 – 828181 PublicationAdd BLAST36
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini820 – 973DIPSYPROSITE-ProRule annotationAdd BLAST154

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni198 – 82818 X 35 AA approximate tandem repeats1 PublicationAdd BLAST631

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the mam3/map4 family.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, Signal

Phylogenomic databases

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_305054_0_0_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q874R4

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q874R4

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR021746, DIPSY

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF11763, DIPSY, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51825, DIPSY, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

Q874R4-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSLFPQILLR LLFLAFTLKS TSNAEKHDKV DYKDFVRRDD GDTCLRYTTI
60 70 80 90 100
YSQGEYETTI TIPPNSYSNG VSLSNGTLLS TSSPLISTSG QFTSNNVSTT
110 120 130 140 150
SSQRHNTKTI TFFSGTSDYT SVYYDTTGTD DVVYEYHPSS ERHKSTNDTW
160 170 180 190 200
STNLPTNPTT TAIYSTSGSS NITTPYSNRI TNSNTSVNDI TSKYLSVGTI
210 220 230 240 250
TLTTISGSDL YTSTFPANGT TSGTVEVVIP TAGTVTETAV SGSELYTSTF
260 270 280 290 300
PANGTTSGTV EVVIPTAGTR TVTKISGSKF FTTTTDASGT VSGTVEVVLP
310 320 330 340 350
TAGTNTMTVV SGSRFFTSVV SASGTVSGEQ VIVYPTAGMV TETIVSGSEI
360 370 380 390 400
FNTTYPASGT RTGTVEVVIP TAGTVTETEI SGSELYTSTF PANGTTSGTV
410 420 430 440 450
EVVIPTAGTR TVTKISGSKF FTTTTDASGT VSGTVEVVLP TAGTNTMTVV
460 470 480 490 500
SGSRFFTSVV SASGTVSGEH IIVEPTAGVV TETVVSGSVG YTTTYPAHDT
510 520 530 540 550
VSGTVEVVEP TAGVVTETVV SGSVGYTTAY PAHDTVSGTV EVVEPTAGVV
560 570 580 590 600
TETVVSGSVG YTTTYPAHDT VSGTVEVVEP TAGVVTETVV SGSVGYTTTY
610 620 630 640 650
PAHDTVSGTV EVVEPTAGVV TETVVSGSVG YTTTYPAHDT VSGTVEVVEP
660 670 680 690 700
TAGVVTETVV SGSVGYTTTY PAHDTVSGTV EVVEPTAGVV TETVVSGSVG
710 720 730 740 750
YTTTYPAHDT VSGTVEVVEP TAGVVTETVV SGSVGYTTTY PAHDTVSGTV
760 770 780 790 800
EVVEPTAGVV TETVVSGSVG YTTTYPVQGT VSGTVMIVEP TAGYVTVTTS
810 820 830 840 850
LGSSSYATTV ATASGTSTGT VLQVVPSLFP GCNSKCTSSN AFRILVENDS
860 870 880 890 900
ISPSYLTYRE SDGFGIASSN PSPAGSEGIF YYDSTLKRVV TCCDERPYYR
910 920 930 940 950
TMEGDLAKTY FFIEDEGDGT YKFKLTYGAF SEYLDVKILA DSTFFFKAMD
960 970
SSSSTILNQK VRASNVYFKA VPL
Length:973
Mass (Da):100,886
Last modified:June 1, 2003 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i51C5876D19562B85
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CU329671 Genomic DNA Translation: CAA17032.1

Protein sequence database of the Protein Information Resource

More...
PIRi
T40778

NCBI Reference Sequences

More...
RefSeqi
NP_595272.1, NM_001021179.2

Genome annotation databases

Ensembl fungal genome annotation project

More...
EnsemblFungii
SPBC947.04.1; SPBC947.04.1:pep; SPBC947.04

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
2541237

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
spo:SPBC947.04

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA Translation: CAA17032.1
PIRiT40778
RefSeqiNP_595272.1, NM_001021179.2

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

BioGRIDi277751, 10 interactors
STRINGi4896.SPBC947.04.1

Proteomic databases

PaxDbiQ874R4

Genome annotation databases

EnsemblFungiiSPBC947.04.1; SPBC947.04.1:pep; SPBC947.04
GeneIDi2541237
KEGGispo:SPBC947.04

Organism-specific databases

PomBaseiSPBC947.04, pfl3
VEuPathDBiFungiDB:SPBC947.04

Phylogenomic databases

HOGENOMiCLU_305054_0_0_1
InParanoidiQ874R4
PhylomeDBiQ874R4

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q874R4

Family and domain databases

InterProiView protein in InterPro
IPR021746, DIPSY
PfamiView protein in Pfam
PF11763, DIPSY, 1 hit
PROSITEiView protein in PROSITE
PS51825, DIPSY, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiPFL3_SCHPO
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q874R4
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 4, 2008
Last sequence update: June 1, 2003
Last modified: September 29, 2021
This is version 88 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families
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