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UniProtKB - Q86WK6 (AMGO1_HUMAN)

Entry version 160 (23 Feb 2022)
Sequence version 1 (01 Jun 2003)
Previous versions | rss
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Protein

Amphoterin-induced protein 1

Gene

AMIGO1

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Promotes growth and fasciculation of neurites from cultured hippocampal neurons. May be involved in fasciculation as well as myelination of developing neural axons. May have a role in regeneration as well as neural plasticity in the adult nervous system. May mediate homophilic as well as heterophilic cell-cell interaction and contribute to signal transduction through its intracellular domain. Assembled with KCNB1 modulates the gating characteristics of the delayed rectifier voltage-dependent potassium channel KCNB1.

By similarity

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDevelopmental protein
Biological processCell adhesion, Differentiation, Neurogenesis

Enzyme and pathway databases

Pathway Commons web resource for biological pathway data

More...PathwayCommonsi		Q86WK6

SignaLink: a signaling pathway resource with multi-layered regulatory networks

More...SignaLinki		Q86WK6

Protein family/group databases

Transport Classification Database

More...TCDBi		8.A.43.1.10, the neat-domain containing methaemoglobin heme sequestration (n-mhs) family

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Amphoterin-induced protein 1
Alternative name(s):
AMIGO-1
Alivin-2
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:AMIGO1Imported
Synonyms:ALI2By similarity, AMIGO1 Publication, KIAA1163Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiHomo sapiens (Human)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri9606 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000005640 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 1

Organism-specific databases

Human Gene Nomenclature Database

More...HGNCi		HGNC:20824, AMIGO1

Online Mendelian Inheritance in Man (OMIM)

More...MIMi		615689, gene

neXtProt; the human protein knowledge platform

More...neXtProti		NX_Q86WK6

Eukaryotic Pathogen, Vector and Host Database Resources

More...VEuPathDBi		HostDB:ENSG00000181754

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the subcellular compartment where each non-membrane region of a membrane-spanning protein is found.<p><a href='/help/topo_dom' target='_top'>More...</a></p>Topological domaini28 – 372ExtracellularSequence analysisAdd BLAST345
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei373 – 393HelicalSequence analysisAdd BLAST21
Topological domaini394 – 493CytoplasmicSequence analysisAdd BLAST100

Keywords - Cellular componenti

Cell membrane, Cell projection, Membrane

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

Organism-specific databases

DisGeNET

More...DisGeNETi		57463

Open Targets

More...OpenTargetsi		ENSG00000181754

The Pharmacogenetics and Pharmacogenomics Knowledge Base

More...PharmGKBi		PA142672625

Miscellaneous databases

Pharos NIH Druggable Genome Knowledgebase

More...Pharosi		Q86WK6, Tbio

Genetic variation databases

BioMuta curated single-nucleotide variation and disease association database

More...BioMutai		AMIGO1

Domain mapping of disease mutations (DMDM)

More...DMDMi		68052342

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 27Sequence analysisAdd BLAST27
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_000001450628 – 493Amphoterin-induced protein 1Sequence analysisAdd BLAST466

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the PTM / Processing":/help/ptm_processing_section section describes the positions of cysteine residues participating in disulfide bonds.<p><a href='/help/disulfid' target='_top'>More...</a></p>Disulfide bondi34 ↔ 40PROSITE-ProRule annotation
Disulfide bondi38 ↔ 47PROSITE-ProRule annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm%5Fprocessing%5Fsection">PTM / Processing</a> section specifies the position and type of each covalently attached glycan group (mono-, di-, or polysaccharide).<p><a href='/help/carbohyd' target='_top'>More...</a></p>Glycosylationi72N-linked (GlcNAc...) asparagineSequence analysis1
Disulfide bondi225 ↔ 253PROSITE-ProRule annotation
Disulfide bondi227 ↔ 270PROSITE-ProRule annotation
Glycosylationi264N-linked (GlcNAc...) asparagineSequence analysis1
Disulfide bondi290 ↔ 341PROSITE-ProRule annotation
Glycosylationi315N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi349N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi360N-linked (GlcNAc...) asparagineSequence analysis1
<p>This subsection of the 'PTM / Processing' section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei477PhosphoserineCombined sources1
Modified residuei481PhosphoserineBy similarity1

Keywords - PTMi

Disulfide bond, Glycoprotein, Phosphoprotein

Proteomic databases

Encyclopedia of Proteome Dynamics

More...EPDi		Q86WK6

MassIVE - Mass Spectrometry Interactive Virtual Environment

More...MassIVEi		Q86WK6

MaxQB - The MaxQuant DataBase

More...MaxQBi		Q86WK6

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		Q86WK6

PeptideAtlas

More...PeptideAtlasi		Q86WK6

PRoteomics IDEntifications database

More...PRIDEi		Q86WK6

ProteomicsDB: a multi-organism proteome resource

More...ProteomicsDBi		70178

PTM databases

GlyGen: Computational and Informatics Resources for Glycoscience

More...GlyGeni		Q86WK6, 5 sites

iPTMnet integrated resource for PTMs in systems biology context

More...iPTMneti		Q86WK6

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...PhosphoSitePlusi		Q86WK6

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...Bgeei		ENSG00000181754, Expressed in substantia nigra and 193 other tissues

Genevisible search portal to normalized and curated expression data from Genevestigator

More...Genevisiblei		Q86WK6, HS

Organism-specific databases

Human Protein Atlas

More...HPAi		ENSG00000181754, Low tissue specificity

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Homodimer, and heterodimer with AMIGO2 and AMIGO3.

Interacts with KCNB1.

By similarity

<p>This subsection of the '<a href="http://www.uniprot.org/help/interaction%5Fsection">Interaction</a>' section provides information about binary protein-protein interactions. The data presented in this section are a quality-filtered subset of binary interactions automatically derived from the <a href="https://www.ebi.ac.uk/intact/">IntAct database</a>. It is updated at every <a href="http://www.uniprot.org/help/synchronization">UniProt release</a>.<p><a href='/help/binary_interactions' target='_top'>More...</a></p>Binary interactionsi

Hide details
Q86WK6
With#Exp.IntAct
ADIPOQ [Q15848]3EBI-19125216,EBI-10827839
ANKRD46 - isoform 1 [Q86W74-2]3EBI-19125216,EBI-12109402
ASGR1 [P07306]3EBI-19125216,EBI-1172335
BNIP3 [Q12983]3EBI-19125216,EBI-749464
C2CD2L [O14523]3EBI-19125216,EBI-12822627
CLDN11 [O75508]3EBI-19125216,EBI-12820543
CLDN9 [O95484]3EBI-19125216,EBI-18341636
CXCL9 [Q07325]3EBI-19125216,EBI-3911467
EDDM3B [P56851]3EBI-19125216,EBI-10215665
FAM3C [Q92520]3EBI-19125216,EBI-2876774
GJB2 [P29033]3EBI-19125216,EBI-3905204
HHATL [Q9HCP6]3EBI-19125216,EBI-5916693
IGFBP5 [P24593]3EBI-19125216,EBI-720480
LMO3 - isoform 4 [Q8TAP4-4]3EBI-19125216,EBI-11742507
MALL [Q13021]3EBI-19125216,EBI-750078
MIP [P30301]3EBI-19125216,EBI-8449636
NINJ2 [Q9NZG7]3EBI-19125216,EBI-10317425
NKG7 [Q16617]3EBI-19125216,EBI-3919611
PGA4 [P0DJD7]3EBI-19125216,EBI-12957629
PGAP2 - isoform 5 [Q9UHJ9-5]3EBI-19125216,EBI-12092917
PLPP6 [Q8IY26]3EBI-19125216,EBI-11721828
PROM2 [Q8N271]3EBI-19125216,EBI-18210782
PTTG1IP [P53801]3EBI-19125216,EBI-3906138
RPRM [Q9NS64]3EBI-19125216,EBI-1052363
SELENOK [Q9Y6D0]3EBI-19125216,EBI-9679163
SLC38A1 [Q9H2H9]3EBI-19125216,EBI-9978441
SLC38A7 [Q9NVC3]3EBI-19125216,EBI-10314552
SLC41A1 [Q8IVJ1]3EBI-19125216,EBI-12266234
SLC41A2 [Q96JW4]3EBI-19125216,EBI-10290130
STX8 [Q9UNK0]3EBI-19125216,EBI-727240
TM4SF5 [O14894]3EBI-19125216,EBI-19125949
TMEM50B [P56557]3EBI-19125216,EBI-12366453
TMEM60 [Q9H2L4]3EBI-19125216,EBI-2852148
TMEM79 [Q9BSE2]3EBI-19125216,EBI-8649725
TNMD - isoform 2 [Q9H2S6-2]3EBI-19125216,EBI-12003398
TSPO [P30536]3EBI-19125216,EBI-6623146
TTMP [Q5BVD1]3EBI-19125216,EBI-10243654
UPK2 [O00526]3EBI-19125216,EBI-10179682

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

More...BioGRIDi		121533, 89 interactors

Protein interaction database and analysis system

More...IntActi		Q86WK6, 61 interactors

STRING: functional protein association networks

More...STRINGi		9606.ENSP00000358880

Miscellaneous databases

RNAct, Protein-RNA interaction predictions for model organisms.

More...RNActi		Q86WK6, protein

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		Q86WK6

Database of comparative protein structure models

More...ModBasei		Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini28 – 61LRRNTAdd BLAST34
<p>This subsection of the 'Family and Domains' section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati62 – 83LRR 1Add BLAST22
Repeati87 – 108LRR 2Add BLAST22
Repeati111 – 132LRR 3Add BLAST22
Repeati135 – 156LRR 4Add BLAST22
Repeati159 – 179LRR 5Add BLAST21
Repeati186 – 206LRR 6Add BLAST21
Domaini221 – 272LRRCTAdd BLAST52
Domaini269 – 353Ig-like C2-typeSequence analysisAdd BLAST85

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni405 – 493DisorderedSequence analysisAdd BLAST89

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular type of amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi408 – 424Polar residuesSequence analysisAdd BLAST17
Compositional biasi476 – 493Polar residuesSequence analysisAdd BLAST18

<p>This subsection of the 'Family and domains' section provides general information on the biological role of a domain. The term 'domain' is intended here in its wide acceptation, it may be a structural domain, a transmembrane region or a functional domain. Several domains are described in this subsection.<p><a href='/help/domain_cc' target='_top'>More...</a></p>Domaini

The LRR repeat region mediates homodimerization.By similarity

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the immunoglobulin superfamily. AMIGO family.Curated

Keywords - Domaini

Immunoglobulin domain, Leucine-rich repeat, Repeat, Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		ENOG502QVUQ, Eukaryota

Ensembl GeneTree

More...GeneTreei		ENSGT00950000183146

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_030478_0_0_1

InParanoid: Eukaryotic Ortholog Groups

More...InParanoidi		Q86WK6

Identification of Orthologs from Complete Genome Data

More...OMAi		VFSDTPM

Database of Orthologous Groups

More...OrthoDBi		671228at2759

Database for complete collections of gene phylogenies

More...PhylomeDBi		Q86WK6

TreeFam database of animal gene trees

More...TreeFami		TF326838

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		2.60.40.10, 1 hit
3.80.10.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR031283, AMIGO
IPR031284, AMIGO1
IPR000483, Cys-rich_flank_reg_C
IPR007110, Ig-like_dom
IPR036179, Ig-like_dom_sf
IPR013783, Ig-like_fold
IPR013098, Ig_I-set
IPR003599, Ig_sub
IPR001611, Leu-rich_rpt
IPR003591, Leu-rich_rpt_typical-subtyp
IPR032675, LRR_dom_sf

The PANTHER Classification System

More...PANTHERi		PTHR24368, PTHR24368, 1 hit
PTHR24368:SF1, PTHR24368:SF1, 1 hit

Pfam protein domain database

More...Pfami		View protein in Pfam
PF07679, I-set, 1 hit
PF13855, LRR_8, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM00409, IG, 1 hit
SM00369, LRR_TYP, 5 hits
SM00082, LRRCT, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF48726, SSF48726, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS50835, IG_LIKE, 1 hit
PS51450, LRR, 6 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

Q86WK6-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MHPHRDPRGL WLLLPSLSLL LFEVARAGRA VVSCPAACLC ASNILSCSKQ 
        60         70         80         90        100
QLPNVPHSLP SYTALLDLSH NNLSRLRAEW TPTRLTQLHS LLLSHNHLNF 
       110        120        130        140        150
ISSEAFSPVP NLRYLDLSSN QLRTLDEFLF SDLQVLEVLL LYNNHIMAVD 
       160        170        180        190        200
RCAFDDMAQL QKLYLSQNQI SRFPLELVKE GAKLPKLTLL DLSSNKLKNL 
       210        220        230        240        250
PLPDLQKLPA WIKNGLYLHN NPLNCDCELY QLFSHWQYRQ LSSVMDFQED 
       260        270        280        290        300
LYCMNSKKLH NVFNLSFLNC GEYKERAWEA HLGDTLIIKC DTKQQGMTKV 
       310        320        330        340        350
WVTPSNERVL DEVTNGTVSV SKDGSLLFQQ VQVEDGGVYT CYAMGETFNE 
       360        370        380        390        400
TLSVELKVHN FTLHGHHDTL NTAYTTLVGC ILSVVLVLIY LYLTPCRCWC 
       410        420        430        440        450
RGVEKPSSHQ GDSLSSSMLS TTPNHDPMAG GDKDDGFDRR VAFLEPAGPG 
       460        470        480        490 
QGQNGKLKPG NTLPVPEATG KGQRRMSDPE SVSSVFSDTP IVV
Length:493
Mass (Da):55,239
Last modified:June 1, 2003 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i8685B358570D9455
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti454N → S in AAH40879 (PubMed:15489334).Curated1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AY237007 mRNA Translation: AAO48948.1
AK295678 mRNA Translation: BAG58535.1
AL355145 Genomic DNA No translation available.
BC040879 mRNA Translation: AAH40879.1
AB032989 mRNA Translation: BAA86477.1

The Consensus CDS (CCDS) project

More...CCDSi		CCDS30795.1

NCBI Reference Sequences

More...RefSeqi		NP_065754.2, NM_020703.2
XP_011540114.1, XM_011541812.2

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...Ensembli		ENST00000369862; ENSP00000358878; ENSG00000181754
ENST00000369864; ENSP00000358880; ENSG00000181754

Database of genes from NCBI RefSeq genomes

More...GeneIDi		57463

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		hsa:57463

Matched Annotation from NCBI and EMBL-EBI (MANE) - Phase one

More...MANE-Selecti		ENST00000369864.5; ENSP00000358880.4; NM_020703.4; NP_065754.2

UCSC genome browser

More...UCSCi		uc001dxx.5, human

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY237007 mRNA Translation: AAO48948.1
AK295678 mRNA Translation: BAG58535.1
AL355145 Genomic DNA No translation available.
BC040879 mRNA Translation: AAH40879.1
AB032989 mRNA Translation: BAA86477.1
CCDSiCCDS30795.1
RefSeqiNP_065754.2, NM_020703.2
XP_011540114.1, XM_011541812.2

3D structure databases

SMRiQ86WK6
ModBaseiSearch...

Protein-protein interaction databases

BioGRIDi121533, 89 interactors
IntActiQ86WK6, 61 interactors
STRINGi9606.ENSP00000358880

Protein family/group databases

TCDBi8.A.43.1.10, the neat-domain containing methaemoglobin heme sequestration (n-mhs) family

PTM databases

GlyGeniQ86WK6, 5 sites
iPTMnetiQ86WK6
PhosphoSitePlusiQ86WK6

Genetic variation databases

BioMutaiAMIGO1
DMDMi68052342

Proteomic databases

EPDiQ86WK6
MassIVEiQ86WK6
MaxQBiQ86WK6
PaxDbiQ86WK6
PeptideAtlasiQ86WK6
PRIDEiQ86WK6
ProteomicsDBi70178

Protocols and materials databases

ABCD curated depository of sequenced antibodies

More...ABCDi		Q86WK6, 4 sequenced antibodies

Antibodypedia a portal for validated antibodies

More...Antibodypediai		53745, 336 antibodies from 33 providers

The DNASU plasmid repository

More...DNASUi		57463

Genome annotation databases

EnsembliENST00000369862; ENSP00000358878; ENSG00000181754
ENST00000369864; ENSP00000358880; ENSG00000181754
GeneIDi57463
KEGGihsa:57463
MANE-SelectiENST00000369864.5; ENSP00000358880.4; NM_020703.4; NP_065754.2
UCSCiuc001dxx.5, human

Organism-specific databases

Comparative Toxicogenomics Database

More...CTDi		57463
DisGeNETi57463

GeneCards: human genes, protein and diseases

More...GeneCardsi		AMIGO1
HGNCiHGNC:20824, AMIGO1
HPAiENSG00000181754, Low tissue specificity
MIMi615689, gene
neXtProtiNX_Q86WK6
OpenTargetsiENSG00000181754
PharmGKBiPA142672625
VEuPathDBiHostDB:ENSG00000181754

Human Unidentified Gene-Encoded large proteins database

More...HUGEi		Search...

GenAtlas: human gene database

More...GenAtlasi		Search...

Phylogenomic databases

eggNOGiENOG502QVUQ, Eukaryota
GeneTreeiENSGT00950000183146
HOGENOMiCLU_030478_0_0_1
InParanoidiQ86WK6
OMAiVFSDTPM
OrthoDBi671228at2759
PhylomeDBiQ86WK6
TreeFamiTF326838

Enzyme and pathway databases

PathwayCommonsiQ86WK6
SignaLinkiQ86WK6

Miscellaneous databases

BioGRID ORCS database of CRISPR phenotype screens

More...BioGRID-ORCSi		57463, 20 hits in 1034 CRISPR screens

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

More...ChiTaRSi		AMIGO1, human

Database of phenotypes from RNA interference screens in Drosophila and Homo sapiens

More...GenomeRNAii		57463
PharosiQ86WK6, Tbio

Protein Ontology

More...PROi		PR:Q86WK6
RNActiQ86WK6, protein

The Stanford Online Universal Resource for Clones and ESTs

More...SOURCEi		Search...

Gene expression databases

BgeeiENSG00000181754, Expressed in substantia nigra and 193 other tissues
GenevisibleiQ86WK6, HS

Family and domain databases

Gene3Di2.60.40.10, 1 hit
3.80.10.10, 1 hit
InterProiView protein in InterPro
IPR031283, AMIGO
IPR031284, AMIGO1
IPR000483, Cys-rich_flank_reg_C
IPR007110, Ig-like_dom
IPR036179, Ig-like_dom_sf
IPR013783, Ig-like_fold
IPR013098, Ig_I-set
IPR003599, Ig_sub
IPR001611, Leu-rich_rpt
IPR003591, Leu-rich_rpt_typical-subtyp
IPR032675, LRR_dom_sf
PANTHERiPTHR24368, PTHR24368, 1 hit
PTHR24368:SF1, PTHR24368:SF1, 1 hit
PfamiView protein in Pfam
PF07679, I-set, 1 hit
PF13855, LRR_8, 1 hit
SMARTiView protein in SMART
SM00409, IG, 1 hit
SM00369, LRR_TYP, 5 hits
SM00082, LRRCT, 1 hit
SUPFAMiSSF48726, SSF48726, 1 hit
PROSITEiView protein in PROSITE
PS50835, IG_LIKE, 1 hit
PS51450, LRR, 6 hits

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiAMGO1_HUMAN
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q86WK6
Secondary accession number(s): B4DIM3, Q8IW71, Q9ULQ7
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 21, 2005
Last sequence update: June 1, 2003
Last modified: February 23, 2022
This is version 160 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Human chromosome 1
    Human chromosome 1: entries, gene names and cross-references to MIM
  2. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  3. SIMILARITY comments
    Index of protein domains and families
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