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Entry version 55 (12 Aug 2020)
Sequence version 1 (01 Nov 1996)
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Protein

Outer capsid protein P3

Gene
N/A
Organism
Rice gall dwarf virus (RGDV)
Status
Reviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Capsid protein which self-assembles to form the inner icosahedral capsid with a T=2 symmetry, and consisting of 60 P3 dimers.

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Outer capsid protein P3
Alternative name(s):
Core protein P3
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiRice gall dwarf virus (RGDV)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10986 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiVirusesRiboviriaOrthornaviraeDuplornaviricotaResentoviricetesReoviralesReoviridaeSedoreovirinaePhytoreovirus
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section only exists in viral entries and indicates the host(s) either as a specific organism or taxonomic group of organisms that are susceptible to be infected by a virus.<p><a href='/help/virus_host' target='_top'>More...</a></p>Virus hostiNephotettix cincticeps (Green rice leafhopper) (Selenocephalus cincticeps) [TaxID: 94400]
Oryza sativa (Rice) [TaxID: 4530]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006720 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Genome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

  • Virion Curated
  • Host cytoplasm By similarity
  • Note: Found in the interior of spherical cytoplasmic structures, called virus factories, that appear early after infection and are the site of viral replication and packaging.By similarity

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Capsid protein, Host cytoplasm, Outer capsid protein, Virion

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004024031 – 1021Outer capsid protein P3Add BLAST1021

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Homodimer. Homomultimer.

By similarity

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q86112

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR016029, Inner_layer_core_VP3_Reovir
IPR015312, Innr_layr_core_VP3_Phytoreovir

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF09231, RDV-p3, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF56831, SSF56831, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q86112-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MDVTGAPYSS GLNVRNVLLT ESTSTFTPIE TYNVQDDIRT IRISAKIAEE
60 70 80 90 100
SVVSRVPLPV SFKPISEITK LFDIIPISRG STTSIVEHPQ TSFMIKLRDN
110 120 130 140 150
TFSDYACLDH LVAFEPALIL HRLKMLFSIL GKYASSIISE VPTLDVMIDN
160 170 180 190 200
AQVTVIDMSK FDDRNMNTYA DRLPRDIEVY AAKQDILKQY VRTSVNETPI
210 220 230 240 250
TFRDDLPMPV RERPTLYRRY IVPFTPVELS LYNMALQMLD LQYCHPLIVY
260 270 280 290 300
KYLQDRAPPF LVVNDQIGLE MLSAGDGELL PRPVMEVLDY SLVYSSPLAL
310 320 330 340 350
NNLGSLLMSR IKTSIKVRSI NEVSSSLSEI VNASSTVSNS ASSAIANMNV
360 370 380 390 400
AGVETIAAFI IRSVLNPNIS YAMIGKLDLD AFNDFIYGTC LLLLQAITPP
410 420 430 440 450
SAIAAMSRVR INNALAYFLL RYICPQPVYT RLLQNDVIPS LTNTLEWSSV
460 470 480 490 500
DRDILAAIYS NLFVADGRIW NLVSRYYREL PPEEVTQVSV PARETSYGIN
510 520 530 540 550
ETRGISLPYL FGDAITEMRP DNRLNDYKQR LNLPSRSPIL IANPMRNNVV
560 570 580 590 600
DLTNVNVKMD FIMDLYDQNN FLKSPAQWVR NSASNSALLA KFRDSVSNIT
610 620 630 640 650
GILENVLSNA YSNAVNTYCD SVYRAGVPLN WKYRVVIDPK DMMFVIFGVC
660 670 680 690 700
PRYVLMGDSI PDFFAGSEDI LILQLVRAIW EVMSNHMGNV PTRFFRMEDV
710 720 730 740 750
QRDLSEMVSI VLSKKIDVTK YFTDDMRSTT FSKEAWERFI ARQIGEELPP
760 770 780 790 800
LYRTILDQVE TINNYMEQMM SIMPIVDHFY VVRNSGIAAR GSVNPILAAT
810 820 830 840 850
TLNLNQINTT MIIRDWSELV RLVMTQQRVD LNTSHSLFEA EFYKLSEIAS
860 870 880 890 900
NEFVRSNERG EAEPHFTDVE AIRINMYARY ELKIYKEQGE FSKPTKLNKV
910 920 930 940 950
MHEDLTSFVK SNIGKPYPPV FTIPIDIMLN DLGECTSTKT RMRSFKVDEY
960 970 980 990 1000
FKCFTGAQVI IPLDYVNLEH VGSIQDLQVM FNGSVSVRIK PWTIKENFDV
1010 1020
NYVQTGNHEV LIDPLPNVLP I
Length:1,021
Mass (Da):115,967
Last modified:November 1, 1996 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i887DDB6E68CF0450
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
D13774 Genomic RNA Translation: BAA02917.1

NCBI Reference Sequences

More...
RefSeqi
YP_001111368.1, NC_009243.1

Genome annotation databases

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
4955109

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
vg:4955109

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D13774 Genomic RNA Translation: BAA02917.1
RefSeqiYP_001111368.1, NC_009243.1

3D structure databases

SMRiQ86112
ModBaseiSearch...

Genome annotation databases

GeneIDi4955109
KEGGivg:4955109

Family and domain databases

InterProiView protein in InterPro
IPR016029, Inner_layer_core_VP3_Reovir
IPR015312, Innr_layr_core_VP3_Phytoreovir
PfamiView protein in Pfam
PF09231, RDV-p3, 1 hit
SUPFAMiSSF56831, SSF56831, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiP3_RGDV
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q86112
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 30, 2010
Last sequence update: November 1, 1996
Last modified: August 12, 2020
This is version 55 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
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