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Protein

Endo-1,4-beta-xylanase 5-like

Gene

At4g33820

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Binds to and hydrolyzes insoluble and soluble xylan substrates.By similarity

Catalytic activityi

Endohydrolysis of (1->4)-beta-D-xylosidic linkages in xylans.PROSITE-ProRule annotation

Pathwayi: xylan degradation

This protein is involved in the pathway xylan degradation, which is part of Glycan degradation.PROSITE-ProRule annotation
View all proteins of this organism that are known to be involved in the pathway xylan degradation and in Glycan degradation.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei332Proton donorPROSITE-ProRule annotation1
Active sitei439NucleophilePROSITE-ProRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionGlycosidase, Hydrolase
Biological processCarbohydrate metabolism, Polysaccharide degradation, Xylan degradation

Enzyme and pathway databases

BioCyciARA:AT4G33820-MONOMER
UniPathwayi
UPA00114

Protein family/group databases

CAZyiCBM22 Carbohydrate-Binding Module Family 22
GH10 Glycoside Hydrolase Family 10

Names & Taxonomyi

Protein namesi
Recommended name:
Endo-1,4-beta-xylanase 5-likeCurated (EC:3.2.1.8PROSITE-ProRule annotation)
Short name:
AtXyn5-likeCurated
Short name:
Xylan endohydrolase 5-likeCurated
Short name:
Xylanase 5-likeCurated
Gene namesi
Ordered Locus Names:At4g33820Imported
ORF Names:F17I5.10Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

AraportiAT4G33820
TAIRilocus:2118879 AT4G33820

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 23Sequence analysisAdd BLAST23
ChainiPRO_501431198424 – 570Endo-1,4-beta-xylanase 5-likeAdd BLAST547

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi197N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi261N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi307N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi346N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi490N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi515N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi537N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi545N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1

Keywords - PTMi

Glycoprotein

Proteomic databases

PaxDbiQ84WT5

Expressioni

Gene expression databases

ExpressionAtlasiQ84WT5 baseline and differential

Interactioni

Protein-protein interaction databases

STRINGi3702.AT4G33820.1

Structurei

3D structure databases

ProteinModelPortaliQ84WT5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini202 – 501GH10PROSITE-ProRule annotationAdd BLAST300

Domaini

The GH10 domain binds to xylan.By similarity

Sequence similaritiesi

Belongs to the glycosyl hydrolase 10 (cellulase F) family.PROSITE-ProRule annotation

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG410IH86 Eukaryota
COG3693 LUCA
HOGENOMiHOG000237473
InParanoidiQ84WT5
OMAiMQPSWVK
OrthoDBiEOG093612E8
PhylomeDBiQ84WT5

Family and domain databases

Gene3Di2.60.120.260, 1 hit
InterProiView protein in InterPro
IPR008979 Galactose-bd-like_sf
IPR001000 GH10
IPR017853 Glycoside_hydrolase_SF
PfamiView protein in Pfam
PF00331 Glyco_hydro_10, 1 hit
SMARTiView protein in SMART
SM00633 Glyco_10, 1 hit
SUPFAMiSSF51445 SSF51445, 1 hit
PROSITEiView protein in PROSITE
PS51760 GH10_2, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q84WT5-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MNSIKNGFFL CMIFLLWCHV DSGVSIDPFS HSHSLNTECV MKPPRSSETK
60 70 80 90 100
GLLQFSRSLE DDSDEEWKID GNGFIREMAQ RIQLHQGNIY SFSAWVKLRE
110 120 130 140 150
GNDKKVGVVF RTENGRLVHG GEVRANQECW TLLKGGIVPD FSGPVDIFFE
160 170 180 190 200
SENRGAKISA HNVLLKQFSK EEWKLKQDQL IEKIRKSKVR FEVTYENKTA
210 220 230 240 250
VKGVVISLKQ TKSSFLLGCG MNFRILQSQG YRKWFASRFK ITSFTNEMKW
260 270 280 290 300
YATEKARGQE NYTVADSMLK FAEDNGILVR GHTVLWDNPK MQPSWVKNIK
310 320 330 340 350
DPNDVMNVTL NRINSVMKRY KGKLTGWDVV NENLHWDYFE KMLGANASTS
360 370 380 390 400
FYNLAFKIDP DVRLFVNEYN TIENTKEFTA TPIKVKKMME EILAYPGNKN
410 420 430 440 450
MKGAIGAQGH FGPTQPNLAY IRSALDTLGS LGLPIWLTEV DMPKCPNQAQ
460 470 480 490 500
YVEDILREAY SHPAVKGIII FGGPEVSGFD KLTLADKDFN NTQTGDVIDK
510 520 530 540 550
LLKEWQQKSS EIQTNFTADS DNEEEEVSLL HGHYNVNVSH PWIANLSTSF
560 570
SLEVTKEMDQ DQVIRVVISA
Length:570
Mass (Da):64,941
Last modified:June 1, 2003 - v1
Checksum:i073B628D5A70FF78
GO

Sequence cautioni

The sequence CAA19864 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence CAB80099 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL031032 Genomic DNA Translation: CAA19864.1 Sequence problems.
AL161584 Genomic DNA Translation: CAB80099.1 Sequence problems.
CP002687 Genomic DNA Translation: AEE86281.1
BT002790 mRNA Translation: AAO22618.1
PIRiB85398
T05210
RefSeqiNP_680761.1, NM_148395.2
UniGeneiAt.45321

Genome annotation databases

EnsemblPlantsiAT4G33820.1; AT4G33820.1; AT4G33820
GeneIDi829524
GrameneiAT4G33820.1; AT4G33820.1; AT4G33820
KEGGiath:AT4G33820

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL031032 Genomic DNA Translation: CAA19864.1 Sequence problems.
AL161584 Genomic DNA Translation: CAB80099.1 Sequence problems.
CP002687 Genomic DNA Translation: AEE86281.1
BT002790 mRNA Translation: AAO22618.1
PIRiB85398
T05210
RefSeqiNP_680761.1, NM_148395.2
UniGeneiAt.45321

3D structure databases

ProteinModelPortaliQ84WT5
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT4G33820.1

Protein family/group databases

CAZyiCBM22 Carbohydrate-Binding Module Family 22
GH10 Glycoside Hydrolase Family 10

Proteomic databases

PaxDbiQ84WT5

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT4G33820.1; AT4G33820.1; AT4G33820
GeneIDi829524
GrameneiAT4G33820.1; AT4G33820.1; AT4G33820
KEGGiath:AT4G33820

Organism-specific databases

AraportiAT4G33820
TAIRilocus:2118879 AT4G33820

Phylogenomic databases

eggNOGiENOG410IH86 Eukaryota
COG3693 LUCA
HOGENOMiHOG000237473
InParanoidiQ84WT5
OMAiMQPSWVK
OrthoDBiEOG093612E8
PhylomeDBiQ84WT5

Enzyme and pathway databases

UniPathwayi
UPA00114

BioCyciARA:AT4G33820-MONOMER

Gene expression databases

ExpressionAtlasiQ84WT5 baseline and differential

Family and domain databases

Gene3Di2.60.120.260, 1 hit
InterProiView protein in InterPro
IPR008979 Galactose-bd-like_sf
IPR001000 GH10
IPR017853 Glycoside_hydrolase_SF
PfamiView protein in Pfam
PF00331 Glyco_hydro_10, 1 hit
SMARTiView protein in SMART
SM00633 Glyco_10, 1 hit
SUPFAMiSSF51445 SSF51445, 1 hit
PROSITEiView protein in PROSITE
PS51760 GH10_2, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiXYN5L_ARATH
AccessioniPrimary (citable) accession number: Q84WT5
Secondary accession number(s): O82111, Q9M070
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 10, 2018
Last sequence update: June 1, 2003
Last modified: November 7, 2018
This is version 121 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  3. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  4. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
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Main funding by: National Institutes of Health

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