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Protein

Zinc finger CCCH domain-containing protein 32

Gene

At2g47850

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri45 – 73C3H1-type 1PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri90 – 118C3H1-type 2PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri136 – 164C3H1-type 3PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri289 – 317C3H1-type 4PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri335 – 363C3H1-type 5PROSITE-ProRule annotationAdd BLAST29

GO - Molecular functioni

  • DNA binding Source: UniProtKB-KW
  • metal ion binding Source: UniProtKB-KW
  • mRNA binding Source: TAIR

Keywordsi

Molecular functionDNA-binding
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Zinc finger CCCH domain-containing protein 32
Short name:
AtC3H32
Alternative name(s):
Zinc finger CCCH domain-containing protein ZFN-like 1
Gene namesi
Ordered Locus Names:At2g47850
ORF Names:F17A22.24
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

AraportiAT2G47850
TAIRilocus:2043368 AT2G47850

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002139151 – 468Zinc finger CCCH domain-containing protein 32Add BLAST468

Proteomic databases

PaxDbiQ84W91

Expressioni

Gene expression databases

ExpressionAtlasiQ84W91 baseline and differential
GenevisibleiQ84W91 AT

Interactioni

Protein-protein interaction databases

IntActiQ84W91, 2 interactors

Structurei

3D structure databases

ProteinModelPortaliQ84W91
SMRiQ84W91
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi170 – 173Poly-Pro4

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri45 – 73C3H1-type 1PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri90 – 118C3H1-type 2PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri136 – 164C3H1-type 3PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri289 – 317C3H1-type 4PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri335 – 363C3H1-type 5PROSITE-ProRule annotationAdd BLAST29

Keywords - Domaini

Repeat, Zinc-finger

Phylogenomic databases

eggNOGiKOG1677 Eukaryota
COG5063 LUCA
HOGENOMiHOG000237733
InParanoidiQ84W91
OMAiPPSANCN
OrthoDBiEOG093608VP
PhylomeDBiQ84W91

Family and domain databases

InterProiView protein in InterPro
IPR000571 Znf_CCCH
IPR036855 Znf_CCCH_sf
PfamiView protein in Pfam
PF00642 zf-CCCH, 5 hits
SMARTiView protein in SMART
SM00356 ZnF_C3H1, 5 hits
SUPFAMiSSF90229 SSF90229, 5 hits
PROSITEiView protein in PROSITE
PS50103 ZF_C3H1, 5 hits

Sequence (1+)i

Sequence statusi: Complete.

This entry describes 1 isoform i produced by alternative splicing. AlignAdd to basket
Note: A number of isoforms are produced. According to EST sequences.

This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All

Isoform 1 (identifier: Q84W91-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MYARNPPLNG SQSAQAPDWT PADADTGLQE SMWRLGLGSD SYPERPGAPD
60 70 80 90 100
CAYYMRTGVC GYGNRCRYNH PRDRASVEAT VRATGQYPER FGEPPCQFYL
110 120 130 140 150
KTGTCKFGAS CKFHHPKNAG GSMSHVPLNI YGYPVREGDN ECSYYLKTGQ
160 170 180 190 200
CKFGITCKFH HPQPAGTTVP PPPASAPQFY PSVQSLMPDQ YGGPSSSLRV
210 220 230 240 250
ARTLLPGSYM QGAYGPMLLT PGVVPIPGWS PYSAPVSPAL SPGAQHAVGA
260 270 280 290 300
TSLYGVTQLT STTPSLPGVY PSLSSPTGVI QKEQAFPERP GEPECQYYLK
310 320 330 340 350
TGDCKFGTSC KFHHPRDRVP PRANCVLSPI GLPLRPGVQR CTFYVQNGFC
360 370 380 390 400
KFGSTCKFDH PMGTIRYNPS ASSLADAPVA PYPVSSLLGA LAAAPSSSST
410 420 430 440 450
ELIAGGAKDA YMTGVPTSRS TSNISAGLIF SQSGGSIPFS ELQLSSQSSL
460
PLTGSRITRQ GREIRRSF
Length:468
Mass (Da):50,040
Last modified:April 26, 2005 - v2
Checksum:i1D5BD014E33D9F98
GO

Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A8MR17A8MR17_ARATH
Zinc finger C-x8-C-x5-C-x3-H type f...
At2g47850, F17A22.24
442Annotation score:
A0A1P8AXN6A0A1P8AXN6_ARATH
Zinc finger C-x8-C-x5-C-x3-H type f...
At2g47850, F17A22.24
346Annotation score:

Sequence cautioni

The sequence AAC63639 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005309 Genomic DNA Translation: AAC63639.1 Sequence problems.
CP002685 Genomic DNA Translation: AEC10897.1
CP002685 Genomic DNA Translation: AEC10899.1
BT030391 mRNA Translation: ABO45694.1
BT004106 mRNA Translation: AAO42129.1
PIRiC84920
RefSeqiNP_001078078.1, NM_001084609.1 [Q84W91-1]
NP_182306.2, NM_130352.3 [Q84W91-1]
UniGeneiAt.21006

Genome annotation databases

EnsemblPlantsiAT2G47850.1; AT2G47850.1; AT2G47850 [Q84W91-1]
AT2G47850.3; AT2G47850.3; AT2G47850 [Q84W91-1]
GeneIDi819397
GrameneiAT2G47850.1; AT2G47850.1; AT2G47850 [Q84W91-1]
AT2G47850.3; AT2G47850.3; AT2G47850 [Q84W91-1]
KEGGiath:AT2G47850

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005309 Genomic DNA Translation: AAC63639.1 Sequence problems.
CP002685 Genomic DNA Translation: AEC10897.1
CP002685 Genomic DNA Translation: AEC10899.1
BT030391 mRNA Translation: ABO45694.1
BT004106 mRNA Translation: AAO42129.1
PIRiC84920
RefSeqiNP_001078078.1, NM_001084609.1 [Q84W91-1]
NP_182306.2, NM_130352.3 [Q84W91-1]
UniGeneiAt.21006

3D structure databases

ProteinModelPortaliQ84W91
SMRiQ84W91
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ84W91, 2 interactors

Proteomic databases

PaxDbiQ84W91

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G47850.1; AT2G47850.1; AT2G47850 [Q84W91-1]
AT2G47850.3; AT2G47850.3; AT2G47850 [Q84W91-1]
GeneIDi819397
GrameneiAT2G47850.1; AT2G47850.1; AT2G47850 [Q84W91-1]
AT2G47850.3; AT2G47850.3; AT2G47850 [Q84W91-1]
KEGGiath:AT2G47850

Organism-specific databases

AraportiAT2G47850
TAIRilocus:2043368 AT2G47850

Phylogenomic databases

eggNOGiKOG1677 Eukaryota
COG5063 LUCA
HOGENOMiHOG000237733
InParanoidiQ84W91
OMAiPPSANCN
OrthoDBiEOG093608VP
PhylomeDBiQ84W91

Miscellaneous databases

PROiPR:Q84W91

Gene expression databases

ExpressionAtlasiQ84W91 baseline and differential
GenevisibleiQ84W91 AT

Family and domain databases

InterProiView protein in InterPro
IPR000571 Znf_CCCH
IPR036855 Znf_CCCH_sf
PfamiView protein in Pfam
PF00642 zf-CCCH, 5 hits
SMARTiView protein in SMART
SM00356 ZnF_C3H1, 5 hits
SUPFAMiSSF90229 SSF90229, 5 hits
PROSITEiView protein in PROSITE
PS50103 ZF_C3H1, 5 hits
ProtoNetiSearch...

Entry informationi

Entry nameiC3H32_ARATH
AccessioniPrimary (citable) accession number: Q84W91
Secondary accession number(s): A4IJ33, O82252
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 26, 2005
Last sequence update: April 26, 2005
Last modified: April 25, 2018
This is version 97 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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Main funding by: National Institutes of Health

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