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Entry version 139 (11 Dec 2019)
Sequence version 1 (01 Jun 2003)
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Protein

Ribonuclease J

Gene

RNJ

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Essential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity).By similarity3 Publications

<p>This subsection of the ‘Function’ section provides information relevant to cofactors. A cofactor is any non-protein substance required for a protein to be catalytically active. Some cofactors are inorganic, such as the metal atoms zinc, iron, and copper in various oxidation states. Others, such as most vitamins, are organic.<p><a href='/help/cofactor' target='_top'>More...</a></p>Cofactori

Zn2+By similarityNote: Binds up to 2 Zn2+ ions per subunit.By similarity

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section indicates at which position the protein binds a given metal ion. The nature of the metal is indicated in the ‘Description’ field.<p><a href='/help/metal' target='_top'>More...</a></p>Metal bindingi175Zinc 1; via tele nitrogen; catalyticBy similarity1
Metal bindingi177Zinc 1; via pros nitrogen; catalyticBy similarity1
Metal bindingi179Zinc 2; catalyticBy similarity1
Metal bindingi180Zinc 2; via tele nitrogen; catalyticBy similarity1
Metal bindingi245Zinc 1; via tele nitrogen; catalyticBy similarity1
Metal bindingi267Zinc 1; catalyticBy similarity1
Metal bindingi267Zinc 2; catalyticBy similarity1
Metal bindingi494Zinc 2; via tele nitrogen; catalyticBy similarity1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDevelopmental protein, Endonuclease, Exonuclease, Hydrolase, Nuclease, RNA-binding
Biological processAuxin signaling pathway, rRNA processing
LigandMetal-binding, Zinc

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Ribonuclease J1 Publication (EC:3.1.-.-Curated)
Short name:
RNase J1 Publication
Alternative name(s):
Protein EMBRYO DEFECTIVE 27461 Publication
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:RNJ1 Publication
Synonyms:EMB27461 Publication
Ordered Locus Names:At5g63420Imported
ORF Names:MLE2.5Imported, MLE2.6Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 5

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT5G63420

The Arabidopsis Information Resource

More...
TAIRi
locus:2167336 AT5G63420

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Chloroplast, Plastid

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This subsection of the ‘Pathology and Biotech’ section describes the in vivo effects caused by ablation of the gene (or one or more transcripts) coding for the protein described in the entry. This includes gene knockout and knockdown, provided experiments have been performed in the context of a whole organism or a specific tissue, and not at the single-cell level.<p><a href='/help/disruption_phenotype' target='_top'>More...</a></p>Disruption phenotypei

Defective embryo arrested at globular stage (PubMed:15266054, PubMed:25871650). Impaired chloroplast development due to a disturbed formation of internal thylakoid membranes during embryogenesis. Aberrant embryo patterning along the apical-basal axis. Disrupted transport and response of auxin in embryos (PubMed:25871650). Silenced plants exhibit chlorosis and slight disruptions in the cleavage of polycistronic rRNA and mRNA precursors (PubMed:22033332).3 Publications

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a transit peptide.<p><a href='/help/transit' target='_top'>More...</a></p>Transit peptidei1 – 70ChloroplastSequence analysisAdd BLAST70
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_000044459971 – 911Ribonuclease JAdd BLAST841

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q84W56

PRoteomics IDEntifications database

More...
PRIDEi
Q84W56

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
Q84W56

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the ‘Expression’ section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified ‘at protein level’. <br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Moslty expressed in inflorescences, seedlings, leaves, flowers and flower buds, and, to a lower extent, in stems, siliques and roots.1 Publication

<p>This subsection of the ‘Expression’ section provides information on the expression of the gene product at various stages of a cell, tissue or organism development. By default, the information is derived from experiments at the mRNA level, unless specified ‘at the protein level’.<p><a href='/help/developmental_stage' target='_top'>More...</a></p>Developmental stagei

During the early stages of embryo development, first observed at the transition stage. In the heart and torpedo stages, predominantly present in the upper part of embryos. In seedlings, strongly expressed in shoot meristems, hypocotyls, in the vascular bundles of cotyledons, and in the veins of mature leaves. In reproductive organs, detected in inflorescences, especially in sepals, filaments, and stigmas, as well as in mature siliques and seeds.1 Publication

<p>This subsection of the ‘Expression’ section reports the experimentally proven effects of inducers and repressors (usually chemical compounds or environmental factors) on the level of protein (or mRNA) expression (up-regulation, down-regulation, constitutive expression).<p><a href='/help/induction' target='_top'>More...</a></p>Inductioni

By light.1 Publication

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q84W56 baseline and differential

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Homodimer. May be a subunit of the RNA degradosome.

By similarity

Protein-protein interaction databases

Protein interaction database and analysis system

More...
IntActi
Q84W56, 1 interactor

Molecular INTeraction database

More...
MINTi
Q84W56

STRING: functional protein association networks

More...
STRINGi
3702.AT5G63420.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q84W56

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini813 – 877Myb-likePROSITE-ProRule annotationAdd BLAST65

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni336 – 338Substrate bindingBy similarity3
Regioni468 – 472Substrate bindingBy similarity5

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Keywords - Domaini

Transit peptide

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG1137 Eukaryota
KOG4282 Eukaryota
COG0595 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000083333

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q84W56

Identification of Orthologs from Complete Genome Data

More...
OMAi
LSLCPYT

Database of Orthologous Groups

More...
OrthoDBi
663953at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q84W56

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.40.50.10710, 1 hit
3.60.15.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR001279 Metallo-B-lactamas
IPR017877 Myb-like_dom
IPR036866 RibonucZ/Hydroxyglut_hydro
IPR011108 RMMBL
IPR042173 RNase_J_2

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF12706 Lactamase_B_2, 1 hit
PF07521 RMMBL, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00849 Lactamase_B, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF56281 SSF56281, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50090 MYB_LIKE, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

Q84W56-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MMKPASLQGF SSHASSSIYS DVRRPATTPS KMAAFSALSL CPYTFTFRQS
60 70 80 90 100
SRIKSTVSCS VTSAPASGTS SSSKTPRRRS GRLEGVGKSM EDSVKRKMEQ
110 120 130 140 150
FYEGTDGPPL RILPIGGLGE IGMNCMLVGN YDRYILIDAG IMFPDYDEPG
160 170 180 190 200
IQKIMPDTGF IRRWKHKIEA VVITHGHEDH IGALPWVIPA LDPNTPIFAS
210 220 230 240 250
SFTMELIKKR LKEHGIFVQS RLKTFSTRRR FMAGPFEIEP ITVTHSIPDC
260 270 280 290 300
SGLFLRCADG NILHTGDWKI DEAPLDGKVF DREALEELSK EGVTLMMSDS
310 320 330 340 350
TNVLSPGRTI SEKVVADALV RNVMAAKGRV ITTQFASNIH RLGSIKAAAD
360 370 380 390 400
ITGRKLVFVG MSLRTYLEAA WRDGKAPIDP SSLIKVEDIE AYAPKDLLIV
410 420 430 440 450
TTGSQAEPRA ALNLASYGSS HAFKLTKEDI ILYSAKVIPG NESRVMKMMN
460 470 480 490 500
RIADIGPNII MGKNEMLHTS GHAYRGELEE VLKIVKPQHF LPIHGELLFL
510 520 530 540 550
KEHELLGKST GIRHTTVIKN GEMLGVSHLR NRRVLSNGFS SLGRENLQLM
560 570 580 590 600
YSDGDKAFGT SSELCIDERL RISSDGIIVL SMEIMRPGVS ENTLKGKIRI
610 620 630 640 650
TTRCMWLDKG RLLDALHKAA HAALSSCPVT CPLSHMERTV SEVLRKIVRK
660 670 680 690 700
YSGKRPEVIA IATENPMAVR ADEVSARLSG DPSVGSGVAA LRKVVEGNDK
710 720 730 740 750
RSRAKKAPSQ EASPKEVDRT LEDDIIDSAR LLAEEETAAS TYTEEVDTPV
760 770 780 790 800
GSSSEESDDF WKSFINPSSS PSPSETENMN KVADTEPKAE GKENSRDDDE
810 820 830 840 850
LADASDSETK SSPKRVRKNK WKPEEIKKVI RMRGELHSRF QVVKGRMALW
860 870 880 890 900
EEISSNLSAE GINRSPGQCK SLWASLIQKY EESKADERSK TSWPHFEDMN
910
NILSELGTPA S
Length:911
Mass (Da):100,554
Last modified:June 1, 2003 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i920D67FDBCDD1E2C
GO

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence BAB08807 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence BAB08808 differs from that shown. Reason: Erroneous gene model prediction.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti328G → E in BAD44310 (Ref. 4) Curated1
Sequence conflicti665N → D in BAD44310 (Ref. 4) Curated1
Sequence conflicti804A → T in BAD44310 (Ref. 4) Curated1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AB007649 Genomic DNA Translation: BAB08807.1 Sequence problems.
AB007649 Genomic DNA Translation: BAB08808.1 Sequence problems.
CP002688 Genomic DNA Translation: AED97746.1
BT004210 mRNA Translation: AAO42228.1
AK176547 mRNA Translation: BAD44310.1
AK221272 mRNA Translation: BAD93952.1

NCBI Reference Sequences

More...
RefSeqi
NP_201147.2, NM_125737.4

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT5G63420.1; AT5G63420.1; AT5G63420

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
836461

Gramene; a comparative resource for plants

More...
Gramenei
AT5G63420.1; AT5G63420.1; AT5G63420

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT5G63420

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

<p>This subsection of the <a href="http://www.uniprot.org/manual/cross_references_section">Cross-references</a> section provides links to various web resources that are relevant for a specific protein.<p><a href='/help/web_resource' target='_top'>More...</a></p>Web resourcesi

Seed defective Arabidopsis mutants

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB007649 Genomic DNA Translation: BAB08807.1 Sequence problems.
AB007649 Genomic DNA Translation: BAB08808.1 Sequence problems.
CP002688 Genomic DNA Translation: AED97746.1
BT004210 mRNA Translation: AAO42228.1
AK176547 mRNA Translation: BAD44310.1
AK221272 mRNA Translation: BAD93952.1
RefSeqiNP_201147.2, NM_125737.4

3D structure databases

SMRiQ84W56
ModBaseiSearch...

Protein-protein interaction databases

IntActiQ84W56, 1 interactor
MINTiQ84W56
STRINGi3702.AT5G63420.1

PTM databases

iPTMnetiQ84W56

Proteomic databases

PaxDbiQ84W56
PRIDEiQ84W56

Genome annotation databases

EnsemblPlantsiAT5G63420.1; AT5G63420.1; AT5G63420
GeneIDi836461
GrameneiAT5G63420.1; AT5G63420.1; AT5G63420
KEGGiath:AT5G63420

Organism-specific databases

AraportiAT5G63420
TAIRilocus:2167336 AT5G63420

Phylogenomic databases

eggNOGiKOG1137 Eukaryota
KOG4282 Eukaryota
COG0595 LUCA
HOGENOMiHOG000083333
InParanoidiQ84W56
OMAiLSLCPYT
OrthoDBi663953at2759
PhylomeDBiQ84W56

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q84W56

Gene expression databases

ExpressionAtlasiQ84W56 baseline and differential

Family and domain databases

Gene3Di3.40.50.10710, 1 hit
3.60.15.10, 1 hit
InterProiView protein in InterPro
IPR001279 Metallo-B-lactamas
IPR017877 Myb-like_dom
IPR036866 RibonucZ/Hydroxyglut_hydro
IPR011108 RMMBL
IPR042173 RNase_J_2
PfamiView protein in Pfam
PF12706 Lactamase_B_2, 1 hit
PF07521 RMMBL, 1 hit
SMARTiView protein in SMART
SM00849 Lactamase_B, 1 hit
SUPFAMiSSF56281 SSF56281, 1 hit
PROSITEiView protein in PROSITE
PS50090 MYB_LIKE, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiRNJ_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q84W56
Secondary accession number(s): Q67YC1, Q9FMV9, Q9FMW0
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 20, 2018
Last sequence update: June 1, 2003
Last modified: December 11, 2019
This is version 139 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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