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Protein

Type II inositol polyphosphate 5-phosphatase 15

Gene

IP5P15

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Has phosphatase activity toward PtdIns(4,5)P2, PtdIns(3,4,5)P3 and Ins(1,4,5)P3. Has a higher substrate affinity toward PtdIns(4,5)P2. Required for secondary wall synthesis and actin organization in fiber cells.1 Publication

<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

<p>This subsection of the ‘Function’ section provides information relevant to cofactors. A cofactor is any non-protein substance required for a protein to be catalytically active. Some cofactors are inorganic, such as the metal atoms zinc, iron, and copper in various oxidation states. Others, such as most vitamins, are organic.<p><a href='/help/cofactor' target='_top'>More...</a></p>Cofactori

Mg2+1 Publication

<p>This subsection of the ‘Function’ section describes biophysical and chemical properties, such as maximal absorption, kinetic parameters, pH dependence, redox potentials and temperature dependence.<p><a href='/help/biophysicochemical_properties' target='_top'>More...</a></p>Kineticsi

  1. KM=63 µM for PtdIns(4,5)P2 (at pH 7.0 and 22 degrees Celsius)
  2. KM=299 µM for PtdIns(3,4,5)P3 (at pH 7.0 and 22 degrees Celsius)
  3. KM=1040 µM for PtdIns(1,4,5)P3 (at pH 6.5 and 22 degrees Celsius)
  1. Vmax=240 pmol/min/µg enzyme with PtdIns(4,5)P2 as substrate (at pH 7.0 and 22 degrees Celsius)
  2. Vmax=365 pmol/min/µg enzyme with PtdIns(3,4,5)P3 as substrate (at pH 7.0 and 22 degrees Celsius)
  3. Vmax=504 pmol/min/µg enzyme with Ins(1,4,5)P3 as substrate (at pH 6.5 and 22 degrees Celsius)

pH dependencei

Optimum pH is 6.5 with Ins(1,4,5)P3 as substrate, 7.5 with PtdIns(3,4,5)P3 as substrate, and 6.5-8.5 with PtdIns(4,5)P2 as substrate.

Temperature dependencei

Optimum temperature is 22 degrees Celsius with Ins(1,4,5)P3 as substrate, and 22-37 degrees Celsius with PtdIns(4,5)P2 and PtdIns(3,4,5)P3 as substrates.

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionHydrolase
LigandMagnesium, Metal-binding

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...
BioCyci
ARA:AT1G65580-MONOMER

BRENDA Comprehensive Enzyme Information System

More...
BRENDAi
3.1.3.36 399

Reactome - a knowledgebase of biological pathways and processes

More...
Reactomei
R-ATH-1660499 Synthesis of PIPs at the plasma membrane
R-ATH-1855183 Synthesis of IP2, IP, and Ins in the cytosol
R-ATH-1855204 Synthesis of IP3 and IP4 in the cytosol

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Type II inositol polyphosphate 5-phosphatase 15Curated (EC:3.1.3.361 Publication, EC:3.1.3.861 Publication)
Short name:
At5PTase15Curated
Alternative name(s):
Protein FRAGILE FIBER 31 Publication
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:IP5P15Curated
Synonyms:FRA31 Publication
Ordered Locus Names:At1g65580Imported
ORF Names:F5I14.11Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 1

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT1G65580

The Arabidopsis Information Resource

More...
TAIRi
locus:2034141 AT1G65580

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

Mutagenesis

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/manual/pathology_and_biotech_section">'Pathology and Biotech'</a> section describes the effect of the experimental mutation of one or more amino acid(s) on the biological properties of the protein.<p><a href='/help/mutagen' target='_top'>More...</a></p>Mutagenesisi833A → V in fra3; induces a dramatic reduction in secondary wall thickness and a concomitant decrease in stem strength. Causes elevated levels of PtdIns(4,5)P2 and Ins(1,4,5)P3. 1 Publication1

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00002097261 – 1101Type II inositol polyphosphate 5-phosphatase 15Add BLAST1101

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm_processing_section">PTM / Processing</a> section describes <strong>covalent linkages</strong> of various types formed <strong>between two proteins (interchain cross-links)</strong> or <strong>between two parts of the same protein (intrachain cross-links)</strong>, except the disulfide bonds that are annotated in the <a href="http://www.uniprot.org/manual/disulfid">'Disulfide bond'</a> subsection.<p><a href='/help/crosslnk' target='_top'>More...</a></p>Cross-linki907Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)By similarity

Keywords - PTMi

Isopeptide bond, Ubl conjugation

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q84W55

PRoteomics IDEntifications database

More...
PRIDEi
Q84W55

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
Q84W55

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the ‘Expression’ section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified ‘at protein level’. <br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Predominantly expressed in interfascicular fibers and vascular bundles. Expressed in seedlings, stems, roots and flowers. Expressed at lower level in mature leaves.1 Publication

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q84W55 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q84W55 AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
3702.AT1G65580.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase

More...
ProteinModelPortali
Q84W55

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati121 – 162WD 1Add BLAST42
Repeati180 – 219WD 2Add BLAST40
Repeati225 – 263WD 3Add BLAST39
Repeati403 – 432WD 4Add BLAST30
Repeati433 – 481WD 5Add BLAST49
Repeati483 – 519WD 6Add BLAST37

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni749 – 765Catalytic 1By similarityAdd BLAST17
Regioni828 – 843Catalytic 2By similarityAdd BLAST16

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi14 – 52Ser-richAdd BLAST39

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Keywords - Domaini

Repeat, WD repeat

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG0565 Eukaryota
COG5411 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000242921

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q84W55

Identification of Orthologs from Complete Genome Data

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OMAi
SAYGDIW

Database of Orthologous Groups

More...
OrthoDBi
EOG093600RQ

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q84W55

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.130.10.10, 2 hits
3.60.10.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR036691 Endo/exonu/phosph_ase_sf
IPR005135 Endo/exonuclease/phosphatase
IPR000300 IPPc
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR001680 WD40_repeat

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF03372 Exo_endo_phos, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00128 IPPc, 1 hit
SM00320 WD40, 5 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF56219 SSF56219, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS00678 WD_REPEATS_1, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

Q84W55-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEDRQNDQND DVFSFFSPSF SAATPSTLFN RSAYSSSSSS GDDESQPSVD
60 70 80 90 100
DSNKRIDYMI QFLDRRLSED GNHDGIGDGN GSDSLPEFVG KCGESGIFKV
110 120 130 140 150
PIRSAVHPNR PPSLDVRPHP LRETQIGRFL RTMTSTERQL WTGGEDGALR
160 170 180 190 200
VWEFSELYGS GRGLEVEDTA PYKESLGNEF GSAAVVCMIG DEGSRVVWSG
210 220 230 240 250
HRDGRIRCWR LRGDHGIEEA LSWQAHRGPV LSIAISAYGD IWSGSEGGAL
260 270 280 290 300
KVWPWDGALG KSLSLKMEER HMAALAVERS YIDPRNMVSA NGFANTLTSD
310 320 330 340 350
VTFLVSDHTR ARVWSASPLT FAIWDARTRD LIKVFNIDGQ LENRPENSVY
360 370 380 390 400
PDFGSEEEGK MKVTASKKEK AQSSLGFFQR SRNAIMGAAD AVRRAATKGG
410 420 430 440 450
FCDDSRKTEA IVISVDGMIW TGSSNGILMR WDGNGNCLQE FAYESSGILC
460 470 480 490 500
MFTFCSRLWV GYSNGTVQVW DLEGKLLGGW VAHSGPVIKM AIGAGYLFTL
510 520 530 540 550
ANHGGIRGWN VTSPGPLDNV LRAELAGKEF LYSRIENLKI LAGTWNVGEG
560 570 580 590 600
RASTDSLVSW LGCAATGVEI VVVGLQEVEM GAGVLAMSAA KETVGLEGSP
610 620 630 640 650
LGQWWLDMIG KTLDEGSSFV RVGSRQLAGL LICVWVRHDL KPHVGDVDAA
660 670 680 690 700
AVPCGFGRAI GNKGAVGVRL RMYDRVLCFV NCHFAAHLEA VNRRNADFDH
710 720 730 740 750
VYRTMTFSRQ SSSLNAGVAG ASFGVTMPRG GNALGVNTIE ARPELSEADM
760 770 780 790 800
VIFLGDFNYR LDDITYDETR DFISQRCFDW LREKDQLHTE MEAGNVFQGM
810 820 830 840 850
REAIIRFPPT YKFERHQAGL AGYDSGEKKR IPAWCDRILY RDNKKHLGAE
860 870 880 890 900
CSLDCPVVSS ISQYDACMEV TDSDHKPVRC VFSVKIARVD ESVRRQEYGN
910 920 930 940 950
IINSNKKIKV LLGELSKVPE TIVSTNNIIL QNQDSTILRI TNKSEKNIAF
960 970 980 990 1000
FKIICEGQSK IEEDGQAHDH RARGSFGFPQ WLEVSPGTGT IKPNQIAEVS
1010 1020 1030 1040 1050
VHLEDFPTVE EFVDGVAQNS WCEDTRDKEV ILVLVVHGRF STETRKHRIR
1060 1070 1080 1090 1100
VRHCPRGGPA KNHFNDGTKT SGQINALHRS DYHQLSNTLD VVEQLKNLHS

P
Length:1,101
Mass (Da):121,711
Last modified:February 1, 2005 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i256882EB27511965
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A1P8AR99A0A1P8AR99_ARATH
Endonuclease/exonuclease/phosphatas...
FRA3 FRAGILE FIBER3, At1g65580, F5I14.11, F5I14_11
835Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAB60921 differs from that shown. Reason: Erroneous gene model prediction.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti583G → R in AAO42229 (PubMed:14593172).Curated1
Sequence conflicti847L → F in CAB41466 (Ref. 2) Curated1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AY761186 mRNA Translation: AAV87313.1
AY761190 Genomic DNA Translation: AAV87317.1
AJ005682 mRNA Translation: CAB41466.1
AC001229 Genomic DNA Translation: AAB60921.1 Sequence problems.
CP002684 Genomic DNA Translation: AEE34398.1
BT004211 mRNA Translation: AAO42229.1

Protein sequence database of the Protein Information Resource

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PIRi
G96680

NCBI Reference Sequences

More...
RefSeqi
NP_176736.2, NM_105232.3

UniGene gene-oriented nucleotide sequence clusters

More...
UniGenei
At.414

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT1G65580.1; AT1G65580.1; AT1G65580

Database of genes from NCBI RefSeq genomes

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GeneIDi
842869

Gramene; a comparative resource for plants

More...
Gramenei
AT1G65580.1; AT1G65580.1; AT1G65580

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT1G65580

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY761186 mRNA Translation: AAV87313.1
AY761190 Genomic DNA Translation: AAV87317.1
AJ005682 mRNA Translation: CAB41466.1
AC001229 Genomic DNA Translation: AAB60921.1 Sequence problems.
CP002684 Genomic DNA Translation: AEE34398.1
BT004211 mRNA Translation: AAO42229.1
PIRiG96680
RefSeqiNP_176736.2, NM_105232.3
UniGeneiAt.414

3D structure databases

ProteinModelPortaliQ84W55
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT1G65580.1

PTM databases

iPTMnetiQ84W55

Proteomic databases

PaxDbiQ84W55
PRIDEiQ84W55

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G65580.1; AT1G65580.1; AT1G65580
GeneIDi842869
GrameneiAT1G65580.1; AT1G65580.1; AT1G65580
KEGGiath:AT1G65580

Organism-specific databases

AraportiAT1G65580
TAIRilocus:2034141 AT1G65580

Phylogenomic databases

eggNOGiKOG0565 Eukaryota
COG5411 LUCA
HOGENOMiHOG000242921
InParanoidiQ84W55
OMAiSAYGDIW
OrthoDBiEOG093600RQ
PhylomeDBiQ84W55

Enzyme and pathway databases

BioCyciARA:AT1G65580-MONOMER
BRENDAi3.1.3.36 399
ReactomeiR-ATH-1660499 Synthesis of PIPs at the plasma membrane
R-ATH-1855183 Synthesis of IP2, IP, and Ins in the cytosol
R-ATH-1855204 Synthesis of IP3 and IP4 in the cytosol

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q84W55

Gene expression databases

ExpressionAtlasiQ84W55 baseline and differential
GenevisibleiQ84W55 AT

Family and domain databases

Gene3Di2.130.10.10, 2 hits
3.60.10.10, 1 hit
InterProiView protein in InterPro
IPR036691 Endo/exonu/phosph_ase_sf
IPR005135 Endo/exonuclease/phosphatase
IPR000300 IPPc
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR001680 WD40_repeat
PfamiView protein in Pfam
PF03372 Exo_endo_phos, 1 hit
SMARTiView protein in SMART
SM00128 IPPc, 1 hit
SM00320 WD40, 5 hits
SUPFAMiSSF56219 SSF56219, 1 hit
PROSITEiView protein in PROSITE
PS00678 WD_REPEATS_1, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiIP5PF_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q84W55
Secondary accession number(s): O04475, Q5MK18, Q9XFT1
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 2005
Last sequence update: February 1, 2005
Last modified: December 5, 2018
This is version 126 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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