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Protein

Zinc finger CCCH domain-containing protein 56

Gene

Os08g0159800

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri87 – 114C3H1-type 1PROSITE-ProRule annotationAdd BLAST28
Zinc fingeri169 – 197C3H1-type 2PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri245 – 273C3H1-type 3PROSITE-ProRule annotationAdd BLAST29

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Zinc finger CCCH domain-containing protein 56
Short name:
OsC3H56
Gene namesi
Ordered Locus Names:Os08g0159800, LOC_Os08g06330
ORF Names:P0498E12.129, P0672D01.112
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
Proteomesi
  • UP000059680 Componenti: Chromosome 8

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003468491 – 367Zinc finger CCCH domain-containing protein 56Add BLAST367

Proteomic databases

PaxDbiQ84UQ3
PRIDEiQ84UQ3

Expressioni

Gene expression databases

ExpressionAtlasiQ84UQ3 differential
GenevisibleiQ84UQ3 OS

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os08g06330.1

Structurei

3D structure databases

ProteinModelPortaliQ84UQ3
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi67 – 75Poly-Gly9
Compositional biasi157 – 167Poly-GlyAdd BLAST11
Compositional biasi213 – 219Poly-Gly7
Compositional biasi224 – 235Poly-AlaAdd BLAST12

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri87 – 114C3H1-type 1PROSITE-ProRule annotationAdd BLAST28
Zinc fingeri169 – 197C3H1-type 2PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri245 – 273C3H1-type 3PROSITE-ProRule annotationAdd BLAST29

Keywords - Domaini

Repeat, Zinc-finger

Phylogenomic databases

eggNOGiKOG1677 Eukaryota
COG5063 LUCA
HOGENOMiHOG000242590
InParanoidiQ84UQ3
OMAiPHSDVYH
OrthoDBiEOG09360BUB

Family and domain databases

InterProiView protein in InterPro
IPR000571 Znf_CCCH
IPR036855 Znf_CCCH_sf
PfamiView protein in Pfam
PF00642 zf-CCCH, 2 hits
SMARTiView protein in SMART
SM00356 ZnF_C3H1, 3 hits
SUPFAMiSSF90229 SSF90229, 3 hits
PROSITEiView protein in PROSITE
PS50103 ZF_C3H1, 3 hits

Sequencei

Sequence statusi: Complete.

Q84UQ3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDYTNAIHII PDAAGPDAWA NAAAQGGDAG IWATEDDYNS QWNADGGGGG
60 70 80 90 100
SSRAGSEQPP PGKKSRGGGG GEGGGNTSKS RAIGKMFFKT KLCCKFRAGT
110 120 130 140 150
CPYVTNCNFA HGMEELRKPP PNWQEIVAAH EEATEAREEH QIPIMTSSGP
160 170 180 190 200
TAGGDAGCGG GGGGGSGRAY KGRHCKKFYT DEGCPYGDAC TFLHDEQSKA
210 220 230 240 250
RESVAISLSP SVGGGGGGGS YNSAAAAAAS ASAAAGNGPM QKPSNWKTRI
260 270 280 290 300
CNKWEMTGYC PFGSKCHFAH GAAELHKYGG GLVDIDSRDA AATPDSKQAV
310 320 330 340 350
VSAKAPAETA AASTTVLPHA DVYHLGVQAQ RSTIAGQRSG QVQRPIQKWK
360
GPDKISRIYG DWIDETE
Length:367
Mass (Da):37,958
Last modified:June 1, 2003 - v1
Checksum:iE08588C319690D98
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP004635 Genomic DNA Translation: BAC66728.1
AP004698 Genomic DNA Translation: BAC99662.1
AP008214 Genomic DNA Translation: BAF22958.1
AP014964 Genomic DNA Translation: BAT03925.1
RefSeqiXP_015648128.1, XM_015792642.1
XP_015648129.1, XM_015792643.1

Genome annotation databases

EnsemblPlantsiOs08t0159800-00; Os08t0159800-00; Os08g0159800
GeneIDi4344715
GrameneiOs08t0159800-00; Os08t0159800-00; Os08g0159800
KEGGiosa:4344715

Similar proteinsi

Entry informationi

Entry nameiC3H56_ORYSJ
AccessioniPrimary (citable) accession number: Q84UQ3
Secondary accession number(s): A0A0P0XC61
Entry historyiIntegrated into UniProtKB/Swiss-Prot: September 2, 2008
Last sequence update: June 1, 2003
Last modified: May 23, 2018
This is version 85 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations

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