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Entry version 125 (02 Jun 2021)
Sequence version 1 (01 Jun 2003)
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Protein

Polynucleotide 3'-phosphatase ZDP

Gene

ZDP

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Nick-sensing 3'-phosphoesterase involved in a base excision repair pathway required for active DNA demethylation. The N-terminal DNA-binding domain binds specifically to gap sites and sharply bends the target DNA. Lacks 5'-kinase activity but is capable of 3'-phosphoglycolate end processing. Inactive on 3'-alpha,beta-unsaturated aldehyde (3'-dRP). Protects partially genes from transcriptional silencing by preventing promoter DNA hypermethylation.

2 Publications

<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes regulatory mechanisms for enzymes, transporters or microbial transcription factors, and reports the components which regulate (by activation or inhibition) the reaction.<p><a href='/help/activity_regulation' target='_top'>More...</a></p>Activity regulationi

Activated by the presence of DNA (PubMed:11948185). Stimulated by XRCC1 (PubMed:23316050).2 Publications

<p>This subsection of the 'Function' section describes biophysical and chemical properties, such as maximal absorption, kinetic parameters, pH dependence, redox potentials and temperature dependence.<p><a href='/help/biophysicochemical_properties' target='_top'>More...</a></p>Kineticsi

  1. KM=22 µM for single-stranded oligonucleotide1 Publication
  2. KM=35 µM for double-stranded oligonucleotide1 Publication
  1. Vmax=35 pmol/min/pmol enzyme with single-stranded oligonucleotide as substrate1 Publication
  2. Vmax=46 pmol/min/pmol enzyme with double-stranded oligonucleotide as substrate1 Publication

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section specifies the position(s) and type(s) of zinc fingers within the protein.<p><a href='/help/zn_fing' target='_top'>More...</a></p>Zinc fingeri50 – 132PARP-type 1PROSITE-ProRule annotationAdd BLAST83
Zinc fingeri165 – 247PARP-type 2PROSITE-ProRule annotationAdd BLAST83
Zinc fingeri328 – 410PARP-type 3PROSITE-ProRule annotationAdd BLAST83

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDNA-binding, Hydrolase, Kinase, Transferase
Biological processDNA damage, DNA repair, Transcription, Transcription regulation
LigandMetal-binding, Zinc

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...
BioCyci
ARA:AT3G14890-MONOMER

BRENDA Comprehensive Enzyme Information System

More...
BRENDAi
3.1.3.32, 399
3.1.3.7, 399

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Polynucleotide 3'-phosphatase ZDP (EC:3.1.3.32)
Alternative name(s):
DNA nick sensor protein
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:ZDP
Ordered Locus Names:At3g14890
ORF Names:K15M2.3
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 3

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT3G14890

The Arabidopsis Information Resource

More...
TAIRi
locus:2086355, AT3G14890

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Keywords - Cellular componenti

Nucleus

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This subsection of the 'Pathology and Biotech' section describes the in vivo effects caused by ablation of the gene (or one or more transcripts) coding for the protein described in the entry. This includes gene knockout and knockdown, provided experiments have been performed in the context of a whole organism or a specific tissue, and not at the single-cell level.<p><a href='/help/disruption_phenotype' target='_top'>More...</a></p>Disruption phenotypei

No visible phenotype under normal growth conditions (PubMed:22325353, PubMed:25569774). Loss of 3'-phosphatase activity and hypersensitivity to DNA-damaging agents (PubMed:22325353). Increased DNA methylation and transcriptional gene silencing (PubMed:22325353). Zdp ape1l double mutants are embryo lethal and cause DNA hypermethylation and down-regulation of imprinted genes in the endosperm (PubMed:25569774).2 Publications

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004194331 – 694Polynucleotide 3'-phosphatase ZDPAdd BLAST694

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q84JE8

PRoteomics IDEntifications database

More...
PRIDEi
Q84JE8

ProteomicsDB: a multi-organism proteome resource

More...
ProteomicsDBi
232325 [Q84JE8-1]

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
Q84JE8

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q84JE8, baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q84JE8, AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Interacts with ROS1 (via the central region) (PubMed:22325353). Binds to XRCC1 (PubMed:23316050).

2 Publications

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

More...
BioGRIDi
6052, 2 interactors

STRING: functional protein association networks

More...
STRINGi
3702.AT3G14890.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q84JE8

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni266 – 331DisorderedSequence analysisAdd BLAST66

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular type of amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi291 – 324Basic and acidic residuesSequence analysisAdd BLAST34

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

In the C-terminal section; belongs to the DNA 3' phosphatase family.Curated

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri50 – 132PARP-type 1PROSITE-ProRule annotationAdd BLAST83
Zinc fingeri165 – 247PARP-type 2PROSITE-ProRule annotationAdd BLAST83
Zinc fingeri328 – 410PARP-type 3PROSITE-ProRule annotationAdd BLAST83

Keywords - Domaini

Repeat, Zinc-finger

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG1037, Eukaryota
KOG2134, Eukaryota

Identification of Orthologs from Complete Genome Data

More...
OMAi
HHLNCFP

Database of Orthologous Groups

More...
OrthoDBi
540341at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q84JE8

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.30.1740.10, 3 hits
3.40.50.1000, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR036412, HAD-like_sf
IPR006549, HAD-SF_hydro_IIIA
IPR023214, HAD_sf
IPR013954, PNK3P
IPR006551, Polynucleotide_phosphatase
IPR001510, Znf_PARP
IPR036957, Znf_PARP_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF08645, PNK3P, 1 hit
PF00645, zf-PARP, 3 hits

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM01336, zf-PARP, 3 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF56784, SSF56784, 1 hit

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR01664, DNA-3'-Pase, 1 hit
TIGR01662, HAD-SF-IIIA, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50064, PARP_ZN_FINGER_2, 3 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (2)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 2 <p>This subsection of the 'Sequence' section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket
Isoform 1 (identifier: Q84JE8-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the <div> <p><b>What is the canonical sequence?</b><p><a href='/help/canonical_and_isoforms' target='_top'>More...</a></p>canonicali sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MITVAPFVSL RFQFPLYIIN RSTLFFRERT QYLVYNTCHI LRTTAKTMPV
60 70 80 90 100
VAEYAKSNRS SCRSCSNKIA VKSLRLGLIS KGRGGVDMTR WHHFDCFPTD
110 120 130 140 150
SESIASVDDI QGLSALEKED QDALTKLVEQ CGKVPAKKPD EKKGKAKKHI
160 170 180 190 200
MGPKGLTKAA TSSKVIADNA KSSRSSCNRC SQTIVSKDLR VGLVTEDSRG
210 220 230 240 250
FDITRWHHLG CFPIDFHPID SVEDIGGYSS LEKGDQMELK YLAEVNKKDK
260 270 280 290 300
TLIDDVQKMD EGDDEAIADN ELTEETKKGK HSPVAKLVEQ PGEPAKEDED
310 320 330 340 350
EESKKPASDE ISEQKTKDVK NSPDSSKVIS EYAKSSRSTC KKCSQTIAAK
360 370 380 390 400
ELRLGLVTRN FRGFDMKQWH HLGCFPVDSD PIVSVEDIGG FSELQSGDQD
410 420 430 440 450
ALKELVQQCG KQTLVDKMDE DNDDTEAKIK LTEETNKRKH SEVGEMVEED
460 470 480 490 500
ESLTKAKQQM AKTHKVNMSE STSQVEVEAE ITLSASDVKD KYRDANLLPK
510 520 530 540 550
WKAFETVIFL ERDDGLNDSE KIAAFDFDGC LAKTSVKIVG ADAWSLMYPS
560 570 580 590 600
IPEKLQSLHD QGYKLVIFTN ESNIDRWKNK RQAAVDSKIG RLNSFIERVK
610 620 630 640 650
VPIQVFIACG VSSSGGKGGK DDLYRKPKAG MWQLMKKHFN SGIAIDMDKS
660 670 680 690
FYVGDAAGRK MDHSDADIKF AQASGLKFFT PEEYFIPSST SPGT
Length:694
Mass (Da):77,387
Last modified:June 1, 2003 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iC49E53DA71F96AE8
GO
Isoform 2 (identifier: Q84JE8-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     245-254: Missing.

Show »
Length:684
Mass (Da):76,231
Checksum:iE1B9A67DA8ADC90C
GO

<p>This subsection of the 'Sequence' section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence BAA97052 differs from that shown. Reason: Erroneous gene model prediction.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti660K → E in AAM69280 (PubMed:11948185).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_044164245 – 254Missing in isoform 2. 1 Publication10

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AP000370 Genomic DNA Translation: BAA97052.1 Sequence problems.
CP002686 Genomic DNA Translation: AEE75584.1
CP002686 Genomic DNA Translation: AEE75585.1
BT003865 mRNA Translation: AAO41914.1
BT005159 mRNA Translation: AAO50692.1
AF453835 mRNA Translation: AAM69280.2

NCBI Reference Sequences

More...
RefSeqi
NP_188107.3, NM_112351.4 [Q84JE8-1]
NP_850586.2, NM_180255.3 [Q84JE8-2]

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT3G14890.1; AT3G14890.1; AT3G14890 [Q84JE8-1]
AT3G14890.2; AT3G14890.2; AT3G14890 [Q84JE8-2]

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
820718

Gramene; a comparative resource for plants

More...
Gramenei
AT3G14890.1; AT3G14890.1; AT3G14890 [Q84JE8-1]
AT3G14890.2; AT3G14890.2; AT3G14890 [Q84JE8-2]

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT3G14890

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP000370 Genomic DNA Translation: BAA97052.1 Sequence problems.
CP002686 Genomic DNA Translation: AEE75584.1
CP002686 Genomic DNA Translation: AEE75585.1
BT003865 mRNA Translation: AAO41914.1
BT005159 mRNA Translation: AAO50692.1
AF453835 mRNA Translation: AAM69280.2
RefSeqiNP_188107.3, NM_112351.4 [Q84JE8-1]
NP_850586.2, NM_180255.3 [Q84JE8-2]

3D structure databases

SMRiQ84JE8
ModBaseiSearch...

Protein-protein interaction databases

BioGRIDi6052, 2 interactors
STRINGi3702.AT3G14890.1

PTM databases

iPTMnetiQ84JE8

Proteomic databases

PaxDbiQ84JE8
PRIDEiQ84JE8
ProteomicsDBi232325 [Q84JE8-1]

Genome annotation databases

EnsemblPlantsiAT3G14890.1; AT3G14890.1; AT3G14890 [Q84JE8-1]
AT3G14890.2; AT3G14890.2; AT3G14890 [Q84JE8-2]
GeneIDi820718
GrameneiAT3G14890.1; AT3G14890.1; AT3G14890 [Q84JE8-1]
AT3G14890.2; AT3G14890.2; AT3G14890 [Q84JE8-2]
KEGGiath:AT3G14890

Organism-specific databases

AraportiAT3G14890
TAIRilocus:2086355, AT3G14890

Phylogenomic databases

eggNOGiKOG1037, Eukaryota
KOG2134, Eukaryota
OMAiHHLNCFP
OrthoDBi540341at2759
PhylomeDBiQ84JE8

Enzyme and pathway databases

BioCyciARA:AT3G14890-MONOMER
BRENDAi3.1.3.32, 399
3.1.3.7, 399

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q84JE8

Gene expression databases

ExpressionAtlasiQ84JE8, baseline and differential
GenevisibleiQ84JE8, AT

Family and domain databases

Gene3Di3.30.1740.10, 3 hits
3.40.50.1000, 1 hit
InterProiView protein in InterPro
IPR036412, HAD-like_sf
IPR006549, HAD-SF_hydro_IIIA
IPR023214, HAD_sf
IPR013954, PNK3P
IPR006551, Polynucleotide_phosphatase
IPR001510, Znf_PARP
IPR036957, Znf_PARP_sf
PfamiView protein in Pfam
PF08645, PNK3P, 1 hit
PF00645, zf-PARP, 3 hits
SMARTiView protein in SMART
SM01336, zf-PARP, 3 hits
SUPFAMiSSF56784, SSF56784, 1 hit
TIGRFAMsiTIGR01664, DNA-3'-Pase, 1 hit
TIGR01662, HAD-SF-IIIA, 1 hit
PROSITEiView protein in PROSITE
PS50064, PARP_ZN_FINGER_2, 3 hits

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiZDP_ARATH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q84JE8
Secondary accession number(s): F4IXD6, Q8LL89, Q9LKB5
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 3, 2012
Last sequence update: June 1, 2003
Last modified: June 2, 2021
This is version 125 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families
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