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Protein

Capsid protein

Gene

CP

Organism
Odontoglossum ringspot virus (isolate Singapore 1) (ORSV)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Capsid protein self-assembles to form rod-shaped virions about 18 nm in diameter with a central canal enclosing the viral genomic RNA.

GO - Molecular functioni

Names & Taxonomyi

Protein namesi
Recommended name:
Capsid protein
Alternative name(s):
Coat protein
Gene namesi
Name:CP
OrganismiOdontoglossum ringspot virus (isolate Singapore 1) (ORSV)
Taxonomic identifieri138662 [NCBI]
Taxonomic lineageiVirusesssRNA virusesssRNA positive-strand viruses, no DNA stageVirgaviridaeTobamovirus
Virus hostiCymbidium [TaxID: 14366]
Odontoglossum [TaxID: 154697]
Proteomesi
  • UP000008384 Componenti: Genome

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Capsid protein, Helical capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved; by hostBy similarity
ChainiPRO_00001449332 – 158Capsid proteinAdd BLAST157

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei2N-acetylserine; by hostBy similarity1

Keywords - PTMi

Acetylation

Structurei

3D structure databases

ProteinModelPortaliQ84136
SMRiQ84136
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the virgaviridae capsid protein family.Curated

Phylogenomic databases

OrthoDBiVOG0900011A

Family and domain databases

Gene3Di1.20.120.70, 1 hit
InterProiView protein in InterPro
IPR001337 TMV-like_coat
IPR036417 TMV-like_coat_sf
PfamiView protein in Pfam
PF00721 TMV_coat, 1 hit
SUPFAMiSSF47195 SSF47195, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q84136-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSYTITDPSK LAYLSSAWAD PNSLINLCTN SLGNQFQTQQ ARTTVQQQFA
60 70 80 90 100
DVWQPVPTLT SRFPAGAGYF RVYRYDPILD PLITFLMGTF DTRNRIIEVE
110 120 130 140 150
NPQNPTTTET LDATRRVDDA TVAIRSAINN LLNELVRGTG MYNQVSFETM

SGLTWTSS
Length:158
Mass (Da):17,727
Last modified:January 23, 2007 - v3
Checksum:i6A8B40484B089D08
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U34586 Genomic RNA Translation: AAC55015.1

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U34586 Genomic RNA Translation: AAC55015.1

3D structure databases

ProteinModelPortaliQ84136
SMRiQ84136
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

OrthoDBiVOG0900011A

Family and domain databases

Gene3Di1.20.120.70, 1 hit
InterProiView protein in InterPro
IPR001337 TMV-like_coat
IPR036417 TMV-like_coat_sf
PfamiView protein in Pfam
PF00721 TMV_coat, 1 hit
SUPFAMiSSF47195 SSF47195, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiCAPSD_ORSVS
AccessioniPrimary (citable) accession number: Q84136
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: January 23, 2007
Last modified: October 25, 2017
This is version 60 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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