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Entry version 137 (07 Oct 2020)
Sequence version 3 (01 May 2013)
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Protein

Tetratricopeptide repeat protein 28

Gene

Ttc28

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score:

Annotation score:4 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

During mitosis, may be involved in the condensation of spindle midzone microtubules, leading to the formation of midbody.By similarity
Essential for the formation and integrity of the midbody. Max play a critical role in the progress of mitosis and cytokinesis during cell cycle (By similarity).By similarity

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processCell cycle, Cell division, Mitosis

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Tetratricopeptide repeat protein 28
Short name:
TPR repeat protein 28
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Ttc28
Synonyms:Kiaa1043, Tprbk
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMus musculus (Mouse)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10090 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000589 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 5

Organism-specific databases

Mouse genome database (MGD) from Mouse Genome Informatics (MGI)

More...
MGIi
MGI:2140873, Ttc28

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm, Cytoskeleton

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00001064281 – 2450Tetratricopeptide repeat protein 28Add BLAST2450

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei1N-acetylmethionineBy similarity1
Modified residuei24PhosphoserineBy similarity1
Modified residuei1584PhosphoserineCombined sources1
Modified residuei2098PhosphoserineBy similarity1
Modified residuei2216PhosphoserineBy similarity1
Modified residuei2365PhosphoserineBy similarity1
Modified residuei2370PhosphoserineBy similarity1

Keywords - PTMi

Acetylation, Phosphoprotein

Proteomic databases

Encyclopedia of Proteome Dynamics

More...
EPDi
Q80XJ3

MaxQB - The MaxQuant DataBase

More...
MaxQBi
Q80XJ3

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q80XJ3

PeptideAtlas

More...
PeptideAtlasi
Q80XJ3

PRoteomics IDEntifications database

More...
PRIDEi
Q80XJ3

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
Q80XJ3

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...
PhosphoSitePlusi
Q80XJ3

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the 'Expression' section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified 'at protein level'.<br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Expressed in embryos at all stages examined. In adult tissues, detected in heart and at low levels in kidney and testis.1 Publication

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSMUSG00000033209, Expressed in ear and 275 other tissues

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q80XJ3, MM

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Interacts with AURKB.

By similarity

GO - Molecular functioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

More...
BioGRIDi
229101, 1 interactor

Protein interaction database and analysis system

More...
IntActi
Q80XJ3, 2 interactors

STRING: functional protein association networks

More...
STRINGi
10090.ENSMUSP00000136116

Miscellaneous databases

RNAct, Protein-RNA interaction predictions for model organisms.

More...
RNActi
Q80XJ3, protein

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati52 – 85TPR 1Add BLAST34
Repeati87 – 119TPR 2Add BLAST33
Repeati120 – 153TPR 3Add BLAST34
Repeati190 – 223TPR 4Add BLAST34
Repeati228 – 261TPR 5Add BLAST34
Repeati268 – 301TPR 6Add BLAST34
Repeati308 – 341TPR 7Add BLAST34
Repeati348 – 381TPR 8Add BLAST34
Repeati388 – 421TPR 9Add BLAST34
Repeati428 – 461TPR 10Add BLAST34
Repeati468 – 501TPR 11Add BLAST34
Repeati508 – 541TPR 12Add BLAST34
Repeati548 – 581TPR 13Add BLAST34
Repeati588 – 621TPR 14Add BLAST34
Repeati628 – 661TPR 15Add BLAST34
Repeati668 – 701TPR 16Add BLAST34
Repeati708 – 741TPR 17Add BLAST34
Repeati748 – 781TPR 18Add BLAST34
Repeati788 – 821TPR 19Add BLAST34
Repeati828 – 861TPR 20Add BLAST34
Repeati871 – 904TPR 21Add BLAST34
Repeati911 – 944TPR 22Add BLAST34
Repeati951 – 984TPR 23Add BLAST34
Repeati991 – 1024TPR 24Add BLAST34
Repeati1031 – 1064TPR 25Add BLAST34
Repeati1071 – 1104TPR 26Add BLAST34
Repeati1111 – 1144TPR 27Add BLAST34
Repeati1163 – 1196TPR 28Add BLAST34

Keywords - Domaini

Repeat, TPR repeat

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG0548, Eukaryota

Ensembl GeneTree

More...
GeneTreei
ENSGT00940000156428

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q80XJ3

Database of Orthologous Groups

More...
OrthoDBi
733786at2759

TreeFam database of animal gene trees

More...
TreeFami
TF328344

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.25.40.10, 6 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR024983, CHAT_dom
IPR013026, TPR-contain_dom
IPR011990, TPR-like_helical_dom_sf
IPR019734, TPR_repeat

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF12770, CHAT, 1 hit
PF13176, TPR_7, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00028, TPR, 25 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF48452, SSF48452, 7 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50005, TPR, 25 hits
PS50293, TPR_REGION, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

Q80XJ3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEQPPPLAPE PASARSRRRR EPESPPAPIP LFGARTVVQR SPDEPALSKA
60 70 80 90 100
EFVEKVRQSN QACHDGDFHT AIVLYNEALA VDPQNCILYS NRSAAYMKTQ
110 120 130 140 150
QYHKALDDAI KARLLNPKWP KAYFRQGVAL QYLGRHADAL AAFASGLAQD
160 170 180 190 200
PKSLQLLVGM VEAAMKSPMR DTLEPTYQQL QKMKLDKSPF VVVSVVGQEL
210 220 230 240 250
LTAGHHGASV VVLEAALKIG TCSLKLRGSV FSALSSAHWS LGNTEKSTGY
260 270 280 290 300
MQQDLDVAKT LGDQTGECRA HGNLGSAFFS KGNYREALTN HRHQLVLAMK
310 320 330 340 350
LKDREAASSA LSSLGHVYTA IGDYPNALAS HKQCVLLAKQ SKDDLSEARE
360 370 380 390 400
LGNMGAVYIA MGDFENAVQC HEQHLRIAKD LGSKREEARA YSNLGSAYHY
410 420 430 440 450
RRNFDKAMSY HNCVLELAQE LMEKPIEMRA YAGLGHAARC MQDLERAKQY
460 470 480 490 500
HEQQLGIAED LKDRAAEGRA SSNLGIIHQM KGDYDTALKL HKTHLCIAQE
510 520 530 540 550
LSDYAAQGRA YGNMGNAYNA LGMYDQAVKY HRQELQISME VNDRASQAST
560 570 580 590 600
HGNLAVAYQA LGAHDRALQH YQNHLNIARE LRDIQSEARA LSNLGNFHCS
610 620 630 640 650
RGEYVQAAPY YEQYLRLAPD LQDMEGEGKV CHNLGYAHYC LGNYQEAVKY
660 670 680 690 700
YEQDLALAKD LHDKLSQAKA YCNLGLAFKA LLNFAKAEEC QKYLLSLAQS
710 720 730 740 750
LDNSQAKFRA LGNLGDIFIC KKDINGAIKF YEQQLGLSHH VKDRRLEASA
760 770 780 790 800
YAALGTAYRM VQKYDKALGY HTQELEVYQE LSDLPGECRA HGHLAAVYMA
810 820 830 840 850
LGKYTMAFKC YQEQLELGRK LKEPSLEAQV YGNMGITKMN MNVMEDAIGY
860 870 880 890 900
FEQQLAMLQQ LSGNESVLDR GRAYGNLGDC YEALGDYEEA IKYYEQYLSV
910 920 930 940 950
AQSLNRMQDQ AKAYRGLGNG HRATGSLQQA LVCFEKRLVV AHELGEASNK
960 970 980 990 1000
AQAYGELGSL HSQLGNYEQA ISCLERQLNI ARDMKDRALE SDAACGLGGV
1010 1020 1030 1040 1050
YQQMGEYDTA LQYHQLDLQI AEETDNPTCQ GRAYGNLGLT YESLGTFERA
1060 1070 1080 1090 1100
VVYQEQHLSI AAQMNDLVAK TVSYSSLGRT HHALQNYSQA VMYLQEGLRL
1110 1120 1130 1140 1150
AEQLGRREDE AKIRHGLGLS LWASGNLEEA QHQLYRASAL FETIRHEAQL
1160 1170 1180 1190 1200
STDYKLSLFD LQTSSYQALQ RVLVSLGHHD EALAVAERGR TRAFADLLVE
1210 1220 1230 1240 1250
RQTGQQDSDP YSPITIDQIL EMVNAQRGLV LYYSLAAGYL YSWLLAPGAG
1260 1270 1280 1290 1300
ILKFHEHYLG DNSVESSSDF QAGSSAALPV ATNSTLEQHI ASVREALGVE
1310 1320 1330 1340 1350
SYYSRACASS ETESEAGDIM EQQLEEMNKQ LNSVTDPTGF LRMVRHNNLL
1360 1370 1380 1390 1400
HRSCQSMTSL FSGTVSPSKD GTSSLPRRQN SLAKPPLRAL YDLLIAPMEG
1410 1420 1430 1440 1450
GLMHSSGPVG RHRQLVLVLE GELYFVPFAL LKGSASNEYL YERFTLIAVP
1460 1470 1480 1490 1500
AVRSLGPHSK CHLRKTPPTY SSSTTMAAVI GNPKLPSAVM DRWLWGPMPS
1510 1520 1530 1540 1550
AEEEAFMVSE LLGCQPLVGS MATKERVMSA LTQAECVHFA THVSWKLSAL
1560 1570 1580 1590 1600
VLTPNTEGNP AGSKSSFGHP YTIPESLRVQ DDASDVESIS DCPPLRELLL
1610 1620 1630 1640 1650
TAADLLDLRL SVKLVVLSSS QEANGRVTAD GLVALTRAFL AAGAQCVLVA
1660 1670 1680 1690 1700
LWPVPVAASK MFVHAFYSSL LNGLKASASL GEAMKVVQSS KAFSHPSNWA
1710 1720 1730 1740 1750
GFTLIGSDVK LNSPSSLIGQ ALTEILQHPE RARDALRVLL HLVEKSLQRI
1760 1770 1780 1790 1800
QNGQRNAMYT SQQSVENKVG GIPGWQALLT AVGFRLDPAA SGLPAAVFFP
1810 1820 1830 1840 1850
TSDPGDRLQQ CSSTLQALLG LPNPALQALC KLITASETGE QLISRAVKNM
1860 1870 1880 1890 1900
VGMLHQVLVQ LQACEKEQDF ASAPIPVSLS VQLWRLPGCH EFLAALGFDL
1910 1920 1930 1940 1950
CEVGQEEVIL KTGKQASRRT THFALQSLLS LFDSTELPKR LSLDSSSSLE
1960 1970 1980 1990 2000
SLASAQSVSN ALPLGYQHPP FSPTGADSIA SDAISVYSLS SIASSMSFVS
2010 2020 2030 2040 2050
KPEGGLEGGG PRGRQDYDRS KSTHPQRATL PRRQTSPQAR RGASKEEEEY
2060 2070 2080 2090 2100
EGFSIISMEP LATYQGEGKT RFSPDPKQPC VKAPGGVRLS VSSKGSVSTP
2110 2120 2130 2140 2150
NSPVKMTLIP SPNSPFQKVG KLASSDTGES DQSSTETDST VKSQEESTPK
2160 2170 2180 2190 2200
LDPQELAQRI LEETKSHLLA VERLQRSGGP AGPDREDSVV APSSTTVFRA
2210 2220 2230 2240 2250
SETSAFSKPI LSHQRSQLSP LTVKPQPPAR SSSLPKVSSP ATSEVSGKDG
2260 2270 2280 2290 2300
LSPPGSSHPS PGRDTPVSPA DPPLFRLKYP SSPYSAHISK SPRNTSPACS
2310 2320 2330 2340 2350
APSPALSYSS AGSARSSPAD APDEKVQAVH SLKMLWQSTP QPPRGPRKTC
2360 2370 2380 2390 2400
RGAPGTLTSK RDVLSLLNLS PRHGKEEGGA DRLELKELSV QRHDEVPPKV
2410 2420 2430 2440 2450
PTNGHWCTDT ATLTTAGGRS TTAAPRPLRL PLANGYKFLS PGRLFPSSKC
Length:2,450
Mass (Da):267,459
Last modified:May 1, 2013 - v3
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i5E1B47053C61AC99
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A0A0MQN9A0A0A0MQN9_MOUSE
Tetratricopeptide repeat protein 28
Ttc28
2,481Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

<p>This subsection of the 'Sequence' section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAH46779 differs from that shown. Reason: Erroneous initiation. Truncated N-terminus.Curated
The sequence AAH60735 differs from that shown. Reason: Erroneous initiation. Truncated N-terminus.Curated
The sequence BAC65709 differs from that shown. Several sequencing errors and erroneous CDS prediction.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti1769V → L in BAC27414 (PubMed:16141072).Curated1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AC121934 Genomic DNA No translation available.
AC122226 Genomic DNA No translation available.
AC124425 Genomic DNA No translation available.
AC147632 Genomic DNA No translation available.
AC155173 Genomic DNA No translation available.
BC046779 mRNA Translation: AAH46779.2 Different initiation.
BC060735 mRNA Translation: AAH60735.1 Different initiation.
AK122427 mRNA Translation: BAC65709.2 Sequence problems.
AK031458 mRNA Translation: BAC27414.1
AK081382 mRNA Translation: BAC38208.1

The Consensus CDS (CCDS) project

More...
CCDSi
CCDS59682.1

NCBI Reference Sequences

More...
RefSeqi
NP_001254551.1, NM_001267622.1

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENSMUST00000156290; ENSMUSP00000137609; ENSMUSG00000033209

Database of genes from NCBI RefSeq genomes

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GeneIDi
209683

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
mmu:209683

UCSC genome browser

More...
UCSCi
uc033ild.1, mouse

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC121934 Genomic DNA No translation available.
AC122226 Genomic DNA No translation available.
AC124425 Genomic DNA No translation available.
AC147632 Genomic DNA No translation available.
AC155173 Genomic DNA No translation available.
BC046779 mRNA Translation: AAH46779.2 Different initiation.
BC060735 mRNA Translation: AAH60735.1 Different initiation.
AK122427 mRNA Translation: BAC65709.2 Sequence problems.
AK031458 mRNA Translation: BAC27414.1
AK081382 mRNA Translation: BAC38208.1
CCDSiCCDS59682.1
RefSeqiNP_001254551.1, NM_001267622.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

BioGRIDi229101, 1 interactor
IntActiQ80XJ3, 2 interactors
STRINGi10090.ENSMUSP00000136116

PTM databases

iPTMnetiQ80XJ3
PhosphoSitePlusiQ80XJ3

Proteomic databases

EPDiQ80XJ3
MaxQBiQ80XJ3
PaxDbiQ80XJ3
PeptideAtlasiQ80XJ3
PRIDEiQ80XJ3

Protocols and materials databases

Antibodypedia a portal for validated antibodies

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Antibodypediai
5496, 4 antibodies

Genome annotation databases

EnsembliENSMUST00000156290; ENSMUSP00000137609; ENSMUSG00000033209
GeneIDi209683
KEGGimmu:209683
UCSCiuc033ild.1, mouse

Organism-specific databases

Comparative Toxicogenomics Database

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CTDi
23331
MGIiMGI:2140873, Ttc28

Rodent Unidentified Gene-Encoded large proteins database

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Rougei
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Phylogenomic databases

eggNOGiKOG0548, Eukaryota
GeneTreeiENSGT00940000156428
InParanoidiQ80XJ3
OrthoDBi733786at2759
TreeFamiTF328344

Miscellaneous databases

BioGRID ORCS database of CRISPR phenotype screens

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BioGRID-ORCSi
209683, 1 hit in 16 CRISPR screens

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

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ChiTaRSi
Ttc28, mouse

Protein Ontology

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PROi
PR:Q80XJ3
RNActiQ80XJ3, protein

The Stanford Online Universal Resource for Clones and ESTs

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SOURCEi
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Gene expression databases

BgeeiENSMUSG00000033209, Expressed in ear and 275 other tissues
GenevisibleiQ80XJ3, MM

Family and domain databases

Gene3Di1.25.40.10, 6 hits
InterProiView protein in InterPro
IPR024983, CHAT_dom
IPR013026, TPR-contain_dom
IPR011990, TPR-like_helical_dom_sf
IPR019734, TPR_repeat
PfamiView protein in Pfam
PF12770, CHAT, 1 hit
PF13176, TPR_7, 1 hit
SMARTiView protein in SMART
SM00028, TPR, 25 hits
SUPFAMiSSF48452, SSF48452, 7 hits
PROSITEiView protein in PROSITE
PS50005, TPR, 25 hits
PS50293, TPR_REGION, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiTTC28_MOUSE
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q80XJ3
Secondary accession number(s): J3QM46
, J3QQ36, Q6P9J6, Q80TL5, Q8BV10, Q8C0F2
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 19, 2005
Last sequence update: May 1, 2013
Last modified: October 7, 2020
This is version 137 of the entry and version 3 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
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