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UniProtKB - Q80WQ9 (ZBED4_MOUSE)

Entry version 116 (23 Feb 2022)
Sequence version 1 (01 Jun 2003)
Previous versions | rss
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Protein

Zinc finger BED domain-containing protein 4

Gene

Zbed4

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Transcriptional regulator that binds to poly-guanine tracts in gene promoters and activates transcription (By similarity).

Able to bind single- and double-stranded DNA and RNA (PubMed:22693546).

By similarity1 Publication

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section indicates at which position the protein binds a given metal ion. The nature of the metal is indicated in the 'Description' field.<p><a href='/help/metal' target='_top'>More...</a></p>Metal bindingi135Zinc 1PROSITE-ProRule annotation1
Metal bindingi138Zinc 1PROSITE-ProRule annotation1
Metal bindingi159Zinc 1PROSITE-ProRule annotation1
Metal bindingi164Zinc 1PROSITE-ProRule annotation1
Metal bindingi305Zinc 2PROSITE-ProRule annotation1
Metal bindingi308Zinc 2PROSITE-ProRule annotation1
Metal bindingi329Zinc 2PROSITE-ProRule annotation1
Metal bindingi334Zinc 2PROSITE-ProRule annotation1
Metal bindingi477Zinc 3PROSITE-ProRule annotation1
Metal bindingi480Zinc 3PROSITE-ProRule annotation1
Metal bindingi500Zinc 3PROSITE-ProRule annotation1
Metal bindingi505Zinc 3PROSITE-ProRule annotation1
Metal bindingi578Zinc 4PROSITE-ProRule annotation1
Metal bindingi581Zinc 4PROSITE-ProRule annotation1
Metal bindingi602Zinc 4PROSITE-ProRule annotation1
Metal bindingi607Zinc 4PROSITE-ProRule annotation1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section specifies the position(s) and type(s) of zinc fingers within the protein.<p><a href='/help/zn_fing' target='_top'>More...</a></p>Zinc fingeri114 – 171BED-type 1PROSITE-ProRule annotationAdd BLAST58
Zinc fingeri284 – 341BED-type 2PROSITE-ProRule annotationAdd BLAST58
Zinc fingeri456 – 512BED-type 3PROSITE-ProRule annotationAdd BLAST57
Zinc fingeri557 – 614BED-type 4PROSITE-ProRule annotationAdd BLAST58

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionActivator, DNA-binding, RNA-binding
Biological processTranscription, Transcription regulation
LigandMetal-binding, Zinc

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Zinc finger BED domain-containing protein 4
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Zbed4
Synonyms:Kiaa0637
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMus musculus (Mouse)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10090 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Myomorpha › Muroidea › Muridae › Murinae › Mus › Mus
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000589 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 15

Organism-specific databases

Mouse genome database (MGD) from Mouse Genome Informatics (MGI)

More...MGIi		MGI:2682302, Zbed4

Eukaryotic Pathogen, Vector and Host Database Resources

More...VEuPathDBi		HostDB:ENSMUSG00000034333

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Keywords - Cellular componenti

Cytoplasm, Nucleus

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003917941 – 1168Zinc finger BED domain-containing protein 4Add BLAST1168

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm%5Fprocessing%5Fsection">PTM / Processing</a> section describes <strong>covalent linkages</strong> of various types formed <strong>between two proteins (interchain cross-links)</strong> or <strong>between two parts of the same protein (intrachain cross-links)</strong>, except the disulfide bonds that are annotated in the <a href="http://www.uniprot.org/manual/disulfid">'Disulfide bond'</a> subsection.<p><a href='/help/crosslnk' target='_top'>More...</a></p>Cross-linki42Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity
Cross-linki489Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity
<p>This subsection of the 'PTM / Processing' section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei623PhosphoserineBy similarity1

Keywords - PTMi

Isopeptide bond, Phosphoprotein, Ubl conjugation

Proteomic databases

Encyclopedia of Proteome Dynamics

More...EPDi		Q80WQ9

jPOST - Japan Proteome Standard Repository/Database

More...jPOSTi		Q80WQ9

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		Q80WQ9

PeptideAtlas

More...PeptideAtlasi		Q80WQ9

PRoteomics IDEntifications database

More...PRIDEi		Q80WQ9

ProteomicsDB: a multi-organism proteome resource

More...ProteomicsDBi		275336

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...iPTMneti		Q80WQ9

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...PhosphoSitePlusi		Q80WQ9

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the 'Expression' section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified 'at protein level'.<br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Expressed in the thymus (PubMed:19369242). In the retina, expressed in the cone photoreceptors (PubMed:19369242, PubMed:22693546).2 Publications

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...Bgeei		ENSMUSG00000034333, Expressed in embryo and 282 other tissues

Genevisible search portal to normalized and curated expression data from Genevestigator

More...Genevisiblei		Q80WQ9, MM

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Homodimer; via C-terminus (By similarity).

Interacts with MYH9 (By similarity).

Interacts with SAFB/SAFB1 (By similarity).

By similarity

GO - Molecular functioni

Complete GO annotation on QuickGO ...

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		10090.ENSMUSP00000035437

Miscellaneous databases

RNAct, Protein-RNA interaction predictions for model organisms.

More...RNActi		Q80WQ9, protein

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		Q80WQ9

Database of comparative protein structure models

More...ModBasei		Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni22 – 55DisorderedSequence analysisAdd BLAST34
Regioni362 – 443DisorderedSequence analysisAdd BLAST82
Regioni1040 – 1059DisorderedSequence analysisAdd BLAST20
Regioni1083 – 1168Required for homodimerization and nuclear accumulationBy similarityAdd BLAST86

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular type of amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi372 – 443Polar residuesSequence analysisAdd BLAST72

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri114 – 171BED-type 1PROSITE-ProRule annotationAdd BLAST58
Zinc fingeri284 – 341BED-type 2PROSITE-ProRule annotationAdd BLAST58
Zinc fingeri456 – 512BED-type 3PROSITE-ProRule annotationAdd BLAST57
Zinc fingeri557 – 614BED-type 4PROSITE-ProRule annotationAdd BLAST58

Keywords - Domaini

Repeat, Zinc-finger

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		KOG1121, Eukaryota

Ensembl GeneTree

More...GeneTreei		ENSGT00940000161365

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_006260_0_0_1

InParanoid: Eukaryotic Ortholog Groups

More...InParanoidi		Q80WQ9

Identification of Orthologs from Complete Genome Data

More...OMAi		HMWRAHK

Database of Orthologous Groups

More...OrthoDBi		223749at2759

Database for complete collections of gene phylogenies

More...PhylomeDBi		Q80WQ9

TreeFam database of animal gene trees

More...TreeFami		TF322818

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR008906, HATC_C_dom
IPR012337, RNaseH-like_sf
IPR003656, Znf_BED
IPR036236, Znf_C2H2_sf

Pfam protein domain database

More...Pfami		View protein in Pfam
PF05699, Dimer_Tnp_hAT, 1 hit
PF02892, zf-BED, 4 hits

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF53098, SSF53098, 1 hit
SSF57667, SSF57667, 4 hits

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS50808, ZF_BED, 4 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q80WQ9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEDKQETCPK GDSDFVSDKV NFKTEEDDDQ TPCHSLEQVD FKSESEDMRQ 
        60         70         80         90        100
TDSGDEQADI RAASCACQPS GKFLAAESED DYGSLFSQYS STLYSVAMEA 
       110        120        130        140        150
VTQSLLSSRH ISSRKKSPAW KHFFISPRDS TKAICTYCMK EFSRGKNEKD 
       160        170        180        190        200
LSTSCLMRHV RRAHPTKLIQ ENGSLSAGSS FSPPSLLLPP QPADVGDLST 
       210        220        230        240        250
VLSPVRLVQK MAPKIPSPDQ IMEESVTVVS SEELSSDVSV TEKYSREEAL 
       260        270        280        290        300
AGSSPNLSML HYDDASETMA DRNLSLPKST SGSRRRSAVW KHFYLSPLDS 
       310        320        330        340        350
SKAVCVHCMN EFSRGKNGKD LGTSCLIRHM WRAHRSIVLQ ENGGNTGIPP 
       360        370        380        390        400
LYPMPPTLLP ALLPPEGDLN SASLSPGKQV KESPSASSSP ERLPEDLSSH 
       410        420        430        440        450
TNPGDVSRED VSMLSSSDDL GEASVVSSPE KQPADTVNPR FESGTVFQQN 
       460        470        480        490        500
KKVMRRLKSE VWHHFSLAPM DSLKAVCRYC SCVISRGKKG DVGTSCLMRH 
       510        520        530        540        550
LYRRHPEVVG NQKDFLGASL ANSPYATLAS AESSSKLTDL PAVVRKNHQG 
       560        570        580        590        600
VFPTNSKKTS KLWNHFSICS ADSTKVVCLH CGRTISRGKK PTNLGTSCLL 
       610        620        630        640        650
RHLQRFHGHV LKNDVSEATL SRSPGIRRPL GIELSGPSSF RDSTEKFYDS 
       660        670        680        690        700
HPVAKKITSL IAEMIALDLQ PYSLVDNVGF NRLLEYLKPQ YSLPSPSYFS 
       710        720        730        740        750
RTAIPGMYDN VKQIIMSHLK EAESGVVHFT SGIWMSSQTR EYLTLTAHWV 
       760        770        780        790        800
TFASAVRPHC EDHHCSALLD VSQIDCDYSG NSIQKQLECW WEAWVTSIGL 
       810        820        830        840        850
QIGITVTDNP SIGKMLSEGE HSSVQCFSHT VNLIVSEAIK SQRMVQNLLS 
       860        870        880        890        900
IARKLCERVH RSPRAREKLA ELQKEYELPQ HQLIQDVPSK WSTSFHMLER 
       910        920        930        940        950
LIEQKRAVNE VSIECNFREL ISCDQWEVMQ SVCHVLRPFD AASREMSAHM 
       960        970        980        990       1000
STLSQVIPMI HILSRKVEML FGETMGIDTM LKSLKEAMAS RLSATLHDPR 
      1010       1020       1030       1040       1050
YIFATLLDPR YKASLFTEEE AEQYRQDLIR ELEILNSTSE DTATSNGCDS 
      1060       1070       1080       1090       1100
GSPLKDTGTE ESLWSLAPIK RDQREKLPED MVLAYLEEEV LEHSCDPLTY 
      1110       1120       1130       1140       1150
WNLKRSSWPG LSTLAVRFLG CPPSTVPSEK LFSTPMDAGS FGQPRLMMEH 
      1160 
FEKLIFLKVN LPLICFQY
Length:1,168
Mass (Da):130,402
Last modified:June 1, 2003 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i57A65CC20B6FE0BC
GO

<p>This subsection of the 'Sequence' section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence BAC65617 differs from that shown. The sequence differs from that shown because it seems to be derived from a pre-mRNA.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti743L → P in BAC65617 (PubMed:12693553).Curated1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AK122335 Transcribed RNA Translation: BAC65617.1 Sequence problems.
AK143488 mRNA Translation: BAE25396.1
BC026763 mRNA Translation: AAH26763.1
BC052174 mRNA Translation: AAH52174.1

The Consensus CDS (CCDS) project

More...CCDSi		CCDS27731.1

NCBI Reference Sequences

More...RefSeqi		NP_852077.1, NM_181412.3
XP_006520903.1, XM_006520840.3
XP_006520904.1, XM_006520841.3

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...Ensembli		ENSMUST00000041297; ENSMUSP00000035437; ENSMUSG00000034333

Database of genes from NCBI RefSeq genomes

More...GeneIDi		223773

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		mmu:223773

UCSC genome browser

More...UCSCi		uc007xem.1, mouse

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK122335 Transcribed RNA Translation: BAC65617.1 Sequence problems.
AK143488 mRNA Translation: BAE25396.1
BC026763 mRNA Translation: AAH26763.1
BC052174 mRNA Translation: AAH52174.1
CCDSiCCDS27731.1
RefSeqiNP_852077.1, NM_181412.3
XP_006520903.1, XM_006520840.3
XP_006520904.1, XM_006520841.3

3D structure databases

SMRiQ80WQ9
ModBaseiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000035437

PTM databases

iPTMnetiQ80WQ9
PhosphoSitePlusiQ80WQ9

Proteomic databases

EPDiQ80WQ9
jPOSTiQ80WQ9
PaxDbiQ80WQ9
PeptideAtlasiQ80WQ9
PRIDEiQ80WQ9
ProteomicsDBi275336

Protocols and materials databases

Antibodypedia a portal for validated antibodies

More...Antibodypediai		59180, 10 antibodies from 6 providers

Genome annotation databases

EnsembliENSMUST00000041297; ENSMUSP00000035437; ENSMUSG00000034333
GeneIDi223773
KEGGimmu:223773
UCSCiuc007xem.1, mouse

Organism-specific databases

Comparative Toxicogenomics Database

More...CTDi		9889
MGIiMGI:2682302, Zbed4
VEuPathDBiHostDB:ENSMUSG00000034333

Rodent Unidentified Gene-Encoded large proteins database

More...Rougei		Search...

Phylogenomic databases

eggNOGiKOG1121, Eukaryota
GeneTreeiENSGT00940000161365
HOGENOMiCLU_006260_0_0_1
InParanoidiQ80WQ9
OMAiHMWRAHK
OrthoDBi223749at2759
PhylomeDBiQ80WQ9
TreeFamiTF322818

Miscellaneous databases

BioGRID ORCS database of CRISPR phenotype screens

More...BioGRID-ORCSi		223773, 6 hits in 64 CRISPR screens

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

More...ChiTaRSi		Zbed4, mouse

Protein Ontology

More...PROi		PR:Q80WQ9
RNActiQ80WQ9, protein

The Stanford Online Universal Resource for Clones and ESTs

More...SOURCEi		Search...

Gene expression databases

BgeeiENSMUSG00000034333, Expressed in embryo and 282 other tissues
GenevisibleiQ80WQ9, MM

Family and domain databases

InterProiView protein in InterPro
IPR008906, HATC_C_dom
IPR012337, RNaseH-like_sf
IPR003656, Znf_BED
IPR036236, Znf_C2H2_sf
PfamiView protein in Pfam
PF05699, Dimer_Tnp_hAT, 1 hit
PF02892, zf-BED, 4 hits
SUPFAMiSSF53098, SSF53098, 1 hit
SSF57667, SSF57667, 4 hits
PROSITEiView protein in PROSITE
PS50808, ZF_BED, 4 hits

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiZBED4_MOUSE
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q80WQ9
Secondary accession number(s): Q3UPJ9, Q80TV3, Q8R329
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 2, 2010
Last sequence update: June 1, 2003
Last modified: February 23, 2022
This is version 116 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
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