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Entry version 124 (10 Feb 2021)
Sequence version 1 (01 Oct 2003)
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Protein

RNA 5'-monophosphate methyltransferase

Gene

BCDIN3D

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

O-methyltransferase that specifically monomethylates 5'-monophosphate of cytoplasmic histidyl tRNA (tRNA(His)), acting as a capping enzyme by protecting tRNA(His) from cleavage by DICER1 (PubMed:28119416, PubMed:31329584, PubMed:31919512). Also able, with less efficiently, to methylate the 5' monophosphate of a subset of pre-miRNAs, acting as a negative regulator of miRNA processing (PubMed:23063121, PubMed:28119416). The 5' monophosphate of pre-miRNAs is recognized by DICER1 and is required for pre-miRNAs processing: methylation at this position reduces the processing of pre-miRNAs by DICER1 (PubMed:23063121). Was also reported to mediate dimethylation of pre-miR-145; however dimethylation cannot be reproduced by another group which observes a monomethylation of pre-miR-145 (PubMed:23063121, PubMed:28119416).4 Publications

Caution

There is some controversy about O-methyltransferase on pre-miR-145, since the dimethylation first described as the specific enzymatic activity cannot be reproduced by a more recent work which observes a monomethylation of pre-miR-145 but two orders weaker than the methylation of cytosolic histidyl tRNA.2 Publications

<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

<p>This subsection of the 'Function' section describes biophysical and chemical properties, such as maximal absorption, kinetic parameters, pH dependence, redox potentials and temperature dependence.<p><a href='/help/biophysicochemical_properties' target='_top'>More...</a></p>Kineticsi

  1. KM=0.25 µM for cytoplasmic histidyl tRNA1 Publication
  2. KM=15 µM for pre-miR-1451 Publication

    Sites

    Feature keyPosition(s)DescriptionActionsGraphical viewLength
    <p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the interaction between a single amino acid and another chemical entity. Priority is given to the annotation of physiological ligands.<p><a href='/help/binding' target='_top'>More...</a></p>Binding sitei46S-adenosyl-L-methionine1 PublicationImported1
    Binding sitei76S-adenosyl-L-methionine1 PublicationImported1
    Binding sitei110S-adenosyl-L-methionine1 PublicationImported1
    Binding sitei164S-adenosyl-L-methionine1 PublicationImported1

    <p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

    GO - Biological processi

    <p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

    Molecular functionMethyltransferase, Transferase
    LigandS-adenosyl-L-methionine

    Enzyme and pathway databases

    Pathway Commons web resource for biological pathway data

    More...
    PathwayCommonsi
    Q7Z5W3

    Reactome - a knowledgebase of biological pathways and processes

    More...
    Reactomei
    R-HSA-203927, MicroRNA (miRNA) biogenesis

    <p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

    <p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
    Recommended name:
    RNA 5'-monophosphate methyltransferaseCurated (EC:2.1.1.-4 Publications)
    Alternative name(s):
    BCDIN3 domain-containing protein
    <p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
    Name:BCDIN3DImported
    <p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiHomo sapiens (Human)
    <p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri9606 [NCBI]
    <p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
    <p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
    • UP000005640 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 12

    Organism-specific databases

    Human Gene Nomenclature Database

    More...
    HGNCi
    HGNC:27050, BCDIN3D

    neXtProt; the human protein knowledge platform

    More...
    neXtProti
    NX_Q7Z5W3

    Eukaryotic Pathogen, Vector and Host Database Resources

    More...
    VEuPathDBi
    HostDB:ENSG00000186666.5

    <p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

    Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

    Keywords - Cellular componenti

    Cytoplasm

    <p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

    Mutagenesis

    Feature keyPosition(s)DescriptionActionsGraphical viewLength
    <p>This subsection of the <a href="http://www.uniprot.org/manual/pathology%5Fand%5Fbiotech%5Fsection">'Pathology and Biotech'</a> section describes the effect of the experimental mutation of one or more amino acid(s) on the biological properties of the protein.<p><a href='/help/mutagen' target='_top'>More...</a></p>Mutagenesisi37Y → A or F: Abolished O-methyltransferase activity. 1 Publication1
    Mutagenesisi46R → A: Abolished O-methyltransferase activity. 1 Publication1
    Mutagenesisi72 – 74DVG → AVA: Abolished O-methyltransferase activity. 3 Publications3
    Mutagenesisi72D → A: Abolished O-methyltransferase activity. 1 Publication1
    Mutagenesisi74G → A: Abolished O-methyltransferase activity. 1 Publication1
    Mutagenesisi76N → A: Abolished O-methyltransferase activity. 1 Publication1
    Mutagenesisi110D → A: Abolished O-methyltransferase activity. 1 Publication1
    Mutagenesisi111I → G: Decreased O-methyltransferase activity. 1 Publication1
    Mutagenesisi118R → A: Slightly decreased O-methyltransferase activity. 1 Publication1
    Mutagenesisi135D → A: Decreased O-methyltransferase activity. 1 Publication1
    Mutagenesisi136F → G: Abolished O-methyltransferase activity. 1 Publication1
    Mutagenesisi165S → A: Decreased O-methyltransferase activity. 1 Publication1
    Mutagenesisi166I → G: Decreased O-methyltransferase activity. 1 Publication1
    Mutagenesisi169W → F: Abolished O-methyltransferase activity. 1 Publication1
    Mutagenesisi198Q → A: Abolished O-methyltransferase activity. 1 Publication1
    Mutagenesisi201 – 204KCYR → ACYA: Abolished O-methyltransferase activity. 1 Publication4
    Mutagenesisi201K → A: Decreased O-methyltransferase activity. 1 Publication1
    Mutagenesisi204R → A: Decreased O-methyltransferase activity. 1 Publication1
    Mutagenesisi208 – 209RR → AA: Abolished O-methyltransferase activity. 1 Publication2
    Mutagenesisi208R → A: Strongly decreased O-methyltransferase activity. 1 Publication1
    Mutagenesisi209R → A: Abolished O-methyltransferase activity. 1 Publication1
    Mutagenesisi211 – 212RK → AA: Abolished O-methyltransferase activity. 1 Publication2
    Mutagenesisi211R → A: Abolished O-methyltransferase activity. 1 Publication1
    Mutagenesisi212K → A: Decreased O-methyltransferase activity. 1 Publication1
    Mutagenesisi257R → A: Abolished O-methyltransferase activity. 1 Publication1

    Organism-specific databases

    DisGeNET

    More...
    DisGeNETi
    144233

    Open Targets

    More...
    OpenTargetsi
    ENSG00000186666

    The Pharmacogenetics and Pharmacogenomics Knowledge Base

    More...
    PharmGKBi
    PA162377410

    Miscellaneous databases

    Pharos NIH Druggable Genome Knowledgebase

    More...
    Pharosi
    Q7Z5W3, Tbio

    Chemistry databases

    ChEMBL database of bioactive drug-like small molecules

    More...
    ChEMBLi
    CHEMBL3588740

    Genetic variation databases

    BioMuta curated single-nucleotide variation and disease association database

    More...
    BioMutai
    BCDIN3D

    Domain mapping of disease mutations (DMDM)

    More...
    DMDMi
    74738762

    <p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

    Molecule processing

    Feature keyPosition(s)DescriptionActionsGraphical viewLength
    <p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00002892651 – 292RNA 5'-monophosphate methyltransferaseAdd BLAST292

    Proteomic databases

    Encyclopedia of Proteome Dynamics

    More...
    EPDi
    Q7Z5W3

    jPOST - Japan Proteome Standard Repository/Database

    More...
    jPOSTi
    Q7Z5W3

    MassIVE - Mass Spectrometry Interactive Virtual Environment

    More...
    MassIVEi
    Q7Z5W3

    MaxQB - The MaxQuant DataBase

    More...
    MaxQBi
    Q7Z5W3

    PaxDb, a database of protein abundance averages across all three domains of life

    More...
    PaxDbi
    Q7Z5W3

    PeptideAtlas

    More...
    PeptideAtlasi
    Q7Z5W3

    PRoteomics IDEntifications database

    More...
    PRIDEi
    Q7Z5W3

    ProteomicsDB: a multi-organism proteome resource

    More...
    ProteomicsDBi
    69357

    PTM databases

    iPTMnet integrated resource for PTMs in systems biology context

    More...
    iPTMneti
    Q7Z5W3

    Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

    More...
    PhosphoSitePlusi
    Q7Z5W3

    <p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

    Gene expression databases

    Bgee dataBase for Gene Expression Evolution

    More...
    Bgeei
    ENSG00000186666, Expressed in islet of Langerhans and 154 other tissues

    Genevisible search portal to normalized and curated expression data from Genevestigator

    More...
    Genevisiblei
    Q7Z5W3, HS

    Organism-specific databases

    Human Protein Atlas

    More...
    HPAi
    ENSG00000186666, Low tissue specificity

    <p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

    <p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

    Interacts with DICER1; the interaction may be mediated by RNA.

    1 Publication

    <p>This subsection of the '<a href="http://www.uniprot.org/help/interaction%5Fsection">Interaction</a>' section provides information about binary protein-protein interactions. The data presented in this section are a quality-filtered subset of binary interactions automatically derived from the <a href="https://www.ebi.ac.uk/intact/">IntAct database</a>. It is updated at every <a href="http://www.uniprot.org/help/synchronization">UniProt release</a>.<p><a href='/help/binary_interactions' target='_top'>More...</a></p>Binary interactionsi

    Protein-protein interaction databases

    The Biological General Repository for Interaction Datasets (BioGRID)

    More...
    BioGRIDi
    126839, 4 interactors

    Protein interaction database and analysis system

    More...
    IntActi
    Q7Z5W3, 3 interactors

    STRING: functional protein association networks

    More...
    STRINGi
    9606.ENSP00000335201

    Chemistry databases

    BindingDB database of measured binding affinities

    More...
    BindingDBi
    Q7Z5W3

    Miscellaneous databases

    RNAct, Protein-RNA interaction predictions for model organisms.

    More...
    RNActi
    Q7Z5W3, protein

    <p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

    Secondary structure

    1292
    Legend: HelixTurnBeta strandPDB Structure known for this area
    Show more details

    3D structure databases

    SWISS-MODEL Repository - a database of annotated 3D protein structure models

    More...
    SMRi
    Q7Z5W3

    Database of comparative protein structure models

    More...
    ModBasei
    Search...

    Protein Data Bank in Europe - Knowledge Base

    More...
    PDBe-KBi
    Search...

    <p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)DescriptionActionsGraphical viewLength
    <p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini53 – 274Bin3-type SAMPROSITE-ProRule annotationAdd BLAST222

    Region

    Feature keyPosition(s)DescriptionActionsGraphical viewLength
    <p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni135 – 136S-adenosyl-L-methionine binding1 PublicationImported2

    <p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

    Belongs to the methyltransferase superfamily.Curated

    Phylogenomic databases

    evolutionary genealogy of genes: Non-supervised Orthologous Groups

    More...
    eggNOGi
    KOG2899, Eukaryota

    Ensembl GeneTree

    More...
    GeneTreei
    ENSGT00940000153993

    The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

    More...
    HOGENOMi
    CLU_082749_0_0_1

    Identification of Orthologs from Complete Genome Data

    More...
    OMAi
    AVTMWVH

    Database of Orthologous Groups

    More...
    OrthoDBi
    1185441at2759

    Database for complete collections of gene phylogenies

    More...
    PhylomeDBi
    Q7Z5W3

    TreeFam database of animal gene trees

    More...
    TreeFami
    TF324061

    Family and domain databases

    Integrated resource of protein families, domains and functional sites

    More...
    InterProi
    View protein in InterPro
    IPR039772, Bin3-like
    IPR010675, Bin3_C
    IPR024160, BIN3_SAM-bd_dom
    IPR029063, SAM-dependent_MTases

    The PANTHER Classification System

    More...
    PANTHERi
    PTHR12315, PTHR12315, 1 hit

    Pfam protein domain database

    More...
    Pfami
    View protein in Pfam
    PF06859, Bin3, 1 hit

    Superfamily database of structural and functional annotation

    More...
    SUPFAMi
    SSF53335, SSF53335, 1 hit

    PROSITE; a protein domain and family database

    More...
    PROSITEi
    View protein in PROSITE
    PS51515, BIN3_SAM, 1 hit

    <p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

    <p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

    Q7Z5W3-1 [UniParc]FASTAAdd to basket
    « Hide
            10         20         30         40         50
    MAVPTELDGG SVKETAAEEE SRVLAPGAAP FGNFPHYSRF HPPEQRLRLL
    60 70 80 90 100
    PPELLRQLFP ESPENGPILG LDVGCNSGDL SVALYKHFLS LPDGETCSDA
    110 120 130 140 150
    SREFRLLCCD IDPVLVKRAE KECPFPDALT FITLDFMNQR TRKVLLSSFL
    160 170 180 190 200
    SQFGRSVFDI GFCMSITMWI HLNHGDHGLW EFLAHLSSLC HYLLVEPQPW
    210 220 230 240 250
    KCYRAAARRL RKLGLHDFDH FHSLAIRGDM PNQIVQILTQ DHGMELICCF
    260 270 280 290
    GNTSWDRSLL LFRAKQTIET HPIPESLIEK GKEKNRLSFQ KQ
    Length:292
    Mass (Da):33,200
    Last modified:October 1, 2003 - v1
    <p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i361EF0BBAAC0CCAF
    GO

    Natural variant

    Feature keyPosition(s)DescriptionActionsGraphical viewLength
    <p>This subsection of the 'Sequence' section describes natural variant(s) of the protein sequence.<p><a href='/help/variant' target='_top'>More...</a></p>Natural variantiVAR_032614288S → R. Corresponds to variant dbSNP:rs11169172Ensembl.1

    Sequence databases

    Select the link destinations:

    EMBL nucleotide sequence database

    More...
    EMBLi

    GenBank nucleotide sequence database

    More...
    GenBanki

    DNA Data Bank of Japan; a nucleotide sequence database

    More...
    DDBJi
    Links Updated
    AK292194 mRNA Translation: BAF84883.1
    CH471111 Genomic DNA Translation: EAW58101.1
    BC053560 mRNA Translation: AAH53560.1

    The Consensus CDS (CCDS) project

    More...
    CCDSi
    CCDS8790.1

    NCBI Reference Sequences

    More...
    RefSeqi
    NP_859059.1, NM_181708.2

    Genome annotation databases

    Ensembl eukaryotic genome annotation project

    More...
    Ensembli
    ENST00000333924; ENSP00000335201; ENSG00000186666

    Database of genes from NCBI RefSeq genomes

    More...
    GeneIDi
    144233

    KEGG: Kyoto Encyclopedia of Genes and Genomes

    More...
    KEGGi
    hsa:144233

    UCSC genome browser

    More...
    UCSCi
    uc001rvh.4, human

    <p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

    <p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBLi
    GenBanki
    DDBJi
    Links Updated
    AK292194 mRNA Translation: BAF84883.1
    CH471111 Genomic DNA Translation: EAW58101.1
    BC053560 mRNA Translation: AAH53560.1
    CCDSiCCDS8790.1
    RefSeqiNP_859059.1, NM_181708.2

    3D structure databases

    Select the link destinations:

    Protein Data Bank Europe

    More...
    PDBei

    Protein Data Bank RCSB

    More...
    RCSB PDBi

    Protein Data Bank Japan

    More...
    PDBji
    Links Updated
    PDB entryMethodResolution (Å)ChainPositionsPDBsum
    6L8UX-ray2.92A/B/C/D14-284[»]
    SMRiQ7Z5W3
    ModBaseiSearch...
    PDBe-KBiSearch...

    Protein-protein interaction databases

    BioGRIDi126839, 4 interactors
    IntActiQ7Z5W3, 3 interactors
    STRINGi9606.ENSP00000335201

    Chemistry databases

    BindingDBiQ7Z5W3
    ChEMBLiCHEMBL3588740

    PTM databases

    iPTMnetiQ7Z5W3
    PhosphoSitePlusiQ7Z5W3

    Genetic variation databases

    BioMutaiBCDIN3D
    DMDMi74738762

    Proteomic databases

    EPDiQ7Z5W3
    jPOSTiQ7Z5W3
    MassIVEiQ7Z5W3
    MaxQBiQ7Z5W3
    PaxDbiQ7Z5W3
    PeptideAtlasiQ7Z5W3
    PRIDEiQ7Z5W3
    ProteomicsDBi69357

    Protocols and materials databases

    Antibodypedia a portal for validated antibodies

    More...
    Antibodypediai
    49296, 41 antibodies

    The DNASU plasmid repository

    More...
    DNASUi
    144233

    Genome annotation databases

    EnsembliENST00000333924; ENSP00000335201; ENSG00000186666
    GeneIDi144233
    KEGGihsa:144233
    UCSCiuc001rvh.4, human

    Organism-specific databases

    Comparative Toxicogenomics Database

    More...
    CTDi
    144233
    DisGeNETi144233

    GeneCards: human genes, protein and diseases

    More...
    GeneCardsi
    BCDIN3D
    HGNCiHGNC:27050, BCDIN3D
    HPAiENSG00000186666, Low tissue specificity
    neXtProtiNX_Q7Z5W3
    OpenTargetsiENSG00000186666
    PharmGKBiPA162377410
    VEuPathDBiHostDB:ENSG00000186666.5

    GenAtlas: human gene database

    More...
    GenAtlasi
    Search...

    Phylogenomic databases

    eggNOGiKOG2899, Eukaryota
    GeneTreeiENSGT00940000153993
    HOGENOMiCLU_082749_0_0_1
    OMAiAVTMWVH
    OrthoDBi1185441at2759
    PhylomeDBiQ7Z5W3
    TreeFamiTF324061

    Enzyme and pathway databases

    PathwayCommonsiQ7Z5W3
    ReactomeiR-HSA-203927, MicroRNA (miRNA) biogenesis

    Miscellaneous databases

    BioGRID ORCS database of CRISPR phenotype screens

    More...
    BioGRID-ORCSi
    144233, 29 hits in 873 CRISPR screens

    ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

    More...
    ChiTaRSi
    BCDIN3D, human

    Database of phenotypes from RNA interference screens in Drosophila and Homo sapiens

    More...
    GenomeRNAii
    144233
    PharosiQ7Z5W3, Tbio

    Protein Ontology

    More...
    PROi
    PR:Q7Z5W3
    RNActiQ7Z5W3, protein

    Gene expression databases

    BgeeiENSG00000186666, Expressed in islet of Langerhans and 154 other tissues
    GenevisibleiQ7Z5W3, HS

    Family and domain databases

    InterProiView protein in InterPro
    IPR039772, Bin3-like
    IPR010675, Bin3_C
    IPR024160, BIN3_SAM-bd_dom
    IPR029063, SAM-dependent_MTases
    PANTHERiPTHR12315, PTHR12315, 1 hit
    PfamiView protein in Pfam
    PF06859, Bin3, 1 hit
    SUPFAMiSSF53335, SSF53335, 1 hit
    PROSITEiView protein in PROSITE
    PS51515, BIN3_SAM, 1 hit

    ProtoNet; Automatic hierarchical classification of proteins

    More...
    ProtoNeti
    Search...

    MobiDB: a database of protein disorder and mobility annotations

    More...
    MobiDBi
    Search...

    <p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

    <p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiBN3D2_HUMAN
    <p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q7Z5W3
    Secondary accession number(s): A8K829
    <p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 29, 2007
    Last sequence update: October 1, 2003
    Last modified: February 10, 2021
    This is version 124 of the entry and version 1 of the sequence. See complete history.
    <p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program
    DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

    <p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

    Keywords - Technical termi

    3D-structure, Reference proteome

    Documents

    1. Human chromosome 12
      Human chromosome 12: entries, gene names and cross-references to MIM
    2. Human entries with genetic variants
      List of human entries with genetic variants
    3. Human variants curated from literature reports
      Index of human variants curated from literature reports
    4. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    5. SIMILARITY comments
      Index of protein domains and families
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