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Protein

WUSCHEL-related homeobox 4

Gene

WOX4

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Transcription factor which may be involved in developmental processes.By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi88 – 152Homeobox; WUS-typePROSITE-ProRule annotationAdd BLAST65

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDevelopmental protein, DNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
WUSCHEL-related homeobox 4
Alternative name(s):
OsWOX4
Gene namesi
Name:WOX4
Synonyms:HB3
Ordered Locus Names:Os04g0649400, LOC_Os04g55590
ORF Names:OsJ_015698, OSJNBa0010D21.16, OSJNBb0059K02.2
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
Proteomesi
  • UP000059680 Componenti: Chromosome 4

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003086391 – 236WUSCHEL-related homeobox 4Add BLAST236

Proteomic databases

PaxDbiQ7XTV3

Expressioni

Gene expression databases

GenevisibleiQ7XTV3 OS

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os04g55590.1

Structurei

3D structure databases

ProteinModelPortaliQ7XTV3
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the WUS homeobox family.Curated

Keywords - Domaini

Homeobox

Phylogenomic databases

eggNOGiENOG410IIYK Eukaryota
ENOG410YND1 LUCA
InParanoidiQ7XTV3
OrthoDBiEOG09360P6I

Family and domain databases

CDDicd00086 homeodomain, 1 hit
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR001356 Homeobox_dom
PfamiView protein in Pfam
PF00046 Homeobox, 1 hit
SMARTiView protein in SMART
SM00389 HOX, 1 hit
SUPFAMiSSF46689 SSF46689, 1 hit
PROSITEiView protein in PROSITE
PS50071 HOMEOBOX_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q7XTV3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRLHHLHVAY LDHKASSSSS SPAPPSISPS SIPGSAAFPA FSFKCLRPLA
60 70 80 90 100
PKISLPEPRK MIAPPDFVVP RARNASKLLN YTVQVPAAGT TRWNPSAEQI
110 120 130 140 150
KVLEMLYRGG MRTPNSVQIE RITEELGKYG RIEGKNVFYW FQNHKARERQ
160 170 180 190 200
KQKRAALLTL STLDPSLLPA TANETKEAPE KKEKDVEDGL ASCKRRCKAW
210 220 230
GDGAGDGDAV VATEAAGGCT DEVTLELFPL HPQGKA
Length:236
Mass (Da):25,783
Last modified:March 1, 2004 - v2
Checksum:i867C4F82E854D6E9
GO

Sequence cautioni

The sequence BAF15996 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence CAD88982 differs from that shown. Reason: Frameshift at position 169.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti161S → R in CAD88982 (Ref. 1) Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ556181 mRNA Translation: CAD88982.1 Frameshift.
AL606635 Genomic DNA Translation: CAD41713.2
AL606692 Genomic DNA Translation: CAE04492.1
AP008210 Genomic DNA Translation: BAF15996.1 Sequence problems.
AP014960 Genomic DNA Translation: BAS91342.1
CM000141 Genomic DNA Translation: EAZ32215.1
AM234750 mRNA Translation: CAJ84142.1
RefSeqiXP_015635367.1, XM_015779881.1
UniGeneiOs.49747

Genome annotation databases

EnsemblPlantsiOs04t0649400-01; Os04t0649400-01; Os04g0649400
GeneIDi4337218
GrameneiOs04t0649400-01; Os04t0649400-01; Os04g0649400
KEGGiosa:4337218

Similar proteinsi

Entry informationi

Entry nameiWOX4_ORYSJ
AccessioniPrimary (citable) accession number: Q7XTV3
Secondary accession number(s): A0AAT1
, Q0J9J1, Q70Q05, Q7X7F6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 23, 2007
Last sequence update: March 1, 2004
Last modified: May 23, 2018
This is version 109 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families

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