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Entry version 117 (29 Sep 2021)
Sequence version 2 (01 Mar 2004)
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Protein
Submitted name:

Os04g0645100 protein

Gene

Os04g0645100

Organism
Oryza sativa subsp. japonica (Rice)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Enzyme and pathway databases

Reactome - a knowledgebase of biological pathways and processes for plant species

More...
PlantReactomei
R-OSA-9035605, Regulation of seed size

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Os04g0645100 proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:Os04g0645100Imported
ORF Names:OSNPB_040645100Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiOryza sativa subsp. japonica (Rice)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri39947 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000059680 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 4

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Proteomic databases

PRoteomics IDEntifications database

More...
PRIDEi
Q7XQE6

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q7XQE6, baseline and differential

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
4530.OS04T0645100-01

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q7XQE6

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini316 – 604CluInterPro annotationAdd BLAST289
<p>This subsection of the 'Family and Domains' section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati933 – 966TPRPROSITE-ProRule annotationAdd BLAST34

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 28DisorderedSequence analysisAdd BLAST28
Regioni134 – 172DisorderedSequence analysisAdd BLAST39
Regioni594 – 613DisorderedSequence analysisAdd BLAST20
Regioni1143 – 1171DisorderedSequence analysisAdd BLAST29
Regioni1366 – 1450DisorderedSequence analysisAdd BLAST85
Regioni1544 – 1609DisorderedSequence analysisAdd BLAST66
Regioni1634 – 1698DisorderedSequence analysisAdd BLAST65

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular type of amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi597 – 613Basic and acidic residuesSequence analysisAdd BLAST17
Compositional biasi1147 – 1171Basic and acidic residuesSequence analysisAdd BLAST25
Compositional biasi1384 – 1439Basic and acidic residuesSequence analysisAdd BLAST56
Compositional biasi1547 – 1573Polar residuesSequence analysisAdd BLAST27
Compositional biasi1648 – 1664Polar residuesSequence analysisAdd BLAST17
Compositional biasi1665 – 1694Basic and acidic residuesSequence analysisAdd BLAST30

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

TPR repeatPROSITE-ProRule annotation

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG1839, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_001902_1_1_1

Identification of Orthologs from Complete Genome Data

More...
OMAi
ISKPERG

Database of Orthologous Groups

More...
OrthoDBi
60958at2759

Family and domain databases

Conserved Domains Database

More...
CDDi
cd15466, CLU-central, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.25.40.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR033646, CLU-central
IPR025697, CLU_dom
IPR028275, CLU_N
IPR023231, GSKIP_dom_sf
IPR011990, TPR-like_helical_dom_sf
IPR019734, TPR_repeat

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF15044, CLU_N, 1 hit
PF12807, eIF3_p135, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00028, TPR, 3 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF103107, SSF103107, 1 hit
SSF48452, SSF48452, 2 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51823, CLU, 1 hit
PS50005, TPR, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

Q7XQE6-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAPKGAGRGK GRGGGGGGKG DKRKKEEKVV PSAIDVTVVT PYESQVTLKG
60 70 80 90 100
ISTDRVLDVR KLLGSNVETC HLTNYSLSHV TRGQRLEDGV EIVSLKPCSL
110 120 130 140 150
TIVEEEYATE AAAAAQVRRL LDIVACTTAF VNKPRDGAKH KSSKHARPAT
160 170 180 190 200
PPSPPALAAS PDAHGAGAAQ APPISEAHDM AAIRPPPRLG EFYDFLSFAH
210 220 230 240 250
LTPPVHFIRR KESNGASQEG DYFEIEVKVC NGKLLHIVAS VKGFYSAGKP
260 270 280 290 300
HTVSHSLVDL LQQLSSAFAN AYDALMKAFL DHNKFGNLPY GFRANTWLIP
310 320 330 340 350
PIYLDSATKC PALPVEDENW GGNGGGNGRD GKYDRRRWAK EFSTLARMPC
360 370 380 390 400
KTEEGRVIRD RKAFLLHNLF VDTAIFRAAS TIQRLIDLSG NSTSQQAGLD
410 420 430 440 450
GSLAIEERVG DLLITVKRDQ ADASLKLEDK VDGVALYQTG SMDISQRNLL
460 470 480 490 500
KGLTSDESVV VKDTSILGVV IVKHCGYTAT VKVSGRTKDG NGGKQTSDIC
510 520 530 540 550
DHLDGISNVD VDDLPDGGSN ALNINSLRIS LPKIVNSDIA STQCPTPQSH
560 570 580 590 600
VDNHARKLVR KILEDSLMKL ENMPANNPRT IRWELGSSWL QNLQKKDSPA
610 620 630 640 650
SEDKKNAGHV EKETTIKGLG KHFEQLKKIK KKECHVEGAM SEKEDSDSNC
660 670 680 690 700
SVINGMEESE NTKETDISKL MSEDDFCRLK DLGAGLHQKS LEELTMMAHK
710 720 730 740 750
FYDDTALPKL VADFASLELS PVDGRTMTDF MHTRGLNMCS LGRVVELAEK
760 770 780 790 800
LPHIQSICIH EMVIRSFKHI VRAVIAAVDD MQNMSAAIAE TLNILLGCPR
810 820 830 840 850
LESGTETDAH SEHNLRFRWV ERFLSKRYNW KLKDEFAHLR KFIILRGLCS
860 870 880 890 900
KVGLELVARD YDMNSPNPFD KSDIVNIIPV CKHVVYSSID GRNLLESSKM
910 920 930 940 950
ALDKGKLDDA VNFGTKALSK IVAVCGPYHR LTANAYSLLA VVLYHTGDFN
960 970 980 990 1000
QATIYQQKAL DINERELGLD HPETMKSYGD LSVFYYRLQH IEMALKYVNR
1010 1020 1030 1040 1050
ALYLLQFSCG LSHPNSAATY INVAMMEEGM GNVHVALRYL HEALKCNKRL
1060 1070 1080 1090 1100
LGADHIQTAA SYHAIAIALS MMDAYSLSVQ HEQTTLQILQ EKLGQDDLRT
1110 1120 1130 1140 1150
QDAAAWLEYF ESKALEQQEA ARRGIPKPDS SIASKGHLSV SDLLDYISPD
1160 1170 1180 1190 1200
QERKERDTQR KGRRAKNNIR AHQGELVEEK ESFEHDIGSP HEANKEEFQQ
1210 1220 1230 1240 1250
VKSKAHPPAI SEENYAIHDE LKQVDPLSPE EYSDEGWQAA NLRGRSANVR
1260 1270 1280 1290 1300
KKSSRRRPAL TKLMVDRLED GRTGSAYRAG VQQHMKGDKE DVINSSSQLS
1310 1320 1330 1340 1350
FGSFLKTDKV NGNSSNIENK VFNAISKPER GIKLSGINRP ATIASKLVSY
1360 1370 1380 1390 1400
KDVAVSPPGT VLKPILEQKE AKEKDNAQNT DLIVSSEEED KKLTDEDEEK
1410 1420 1430 1440 1450
EKPSHDSSKE VLSSEPEEIG NDEKAPDSNS DESPTESKKK GGSKLSASAP
1460 1470 1480 1490 1500
PFNPGSLLSM SHPYSTVAIY DASVVLQPIP SQPMEILPHA IDTRVPRGPR
1510 1520 1530 1540 1550
STLYYRTGHT FQRKQGYAHS QSTILRGSNS PPTMNPHAAE FVPGKTSQQP
1560 1570 1580 1590 1600
DVANREPSAD VSVTDSADQL LAPQTSDEVK AGMPAAEQAI QGESTSPCKG
1610 1620 1630 1640 1650
KENRAKDALR NSCKTELARQ ILFSFIVKSV HDSLGSTGAE SDRKPSGPDE
1660 1670 1680 1690 1700
SGNAQSSNNI NKSPSGRKEL DKQQKATVVP KSEKDTEGFT VVSKRRRSKQ
1710 1720
HFVHPIHGLY SQQSICTSVS
Length:1,720
Mass (Da):189,288
Last modified:March 1, 2004 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i7377EA877BDAE7B8
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A0P0WFT1A0A0P0WFT1_ORYSJ
Os04g0645100 protein
Os04g0645100, OSNPB_040645100
821Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AP014960 Genomic DNA Translation: BAS91308.1

NCBI Reference Sequences

More...
RefSeqi
XP_015635737.1, XM_015780251.1

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
Os04t0645100-01; Os04t0645100-01; Os04g0645100

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
4337192

Gramene; a comparative resource for plants

More...
Gramenei
Os04t0645100-01; Os04t0645100-01; Os04g0645100

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
osa:4337192

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP014960 Genomic DNA Translation: BAS91308.1
RefSeqiXP_015635737.1, XM_015780251.1

3D structure databases

SMRiQ7XQE6
ModBaseiSearch...

Protein-protein interaction databases

STRINGi4530.OS04T0645100-01

Proteomic databases

PRIDEiQ7XQE6

Genome annotation databases

EnsemblPlantsiOs04t0645100-01; Os04t0645100-01; Os04g0645100
GeneIDi4337192
GrameneiOs04t0645100-01; Os04t0645100-01; Os04g0645100
KEGGiosa:4337192

Phylogenomic databases

eggNOGiKOG1839, Eukaryota
HOGENOMiCLU_001902_1_1_1
OMAiISKPERG
OrthoDBi60958at2759

Enzyme and pathway databases

PlantReactomeiR-OSA-9035605, Regulation of seed size

Gene expression databases

ExpressionAtlasiQ7XQE6, baseline and differential

Family and domain databases

CDDicd15466, CLU-central, 1 hit
Gene3Di1.25.40.10, 1 hit
InterProiView protein in InterPro
IPR033646, CLU-central
IPR025697, CLU_dom
IPR028275, CLU_N
IPR023231, GSKIP_dom_sf
IPR011990, TPR-like_helical_dom_sf
IPR019734, TPR_repeat
PfamiView protein in Pfam
PF15044, CLU_N, 1 hit
PF12807, eIF3_p135, 1 hit
SMARTiView protein in SMART
SM00028, TPR, 3 hits
SUPFAMiSSF103107, SSF103107, 1 hit
SSF48452, SSF48452, 2 hits
PROSITEiView protein in PROSITE
PS51823, CLU, 1 hit
PS50005, TPR, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ7XQE6_ORYSJ
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q7XQE6
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: October 1, 2003
Last sequence update: March 1, 2004
Last modified: September 29, 2021
This is version 117 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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