Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

UniProtKB - Q7XM41 (Q7XM41_ORYSJ)

Entry version 146 (16 Jan 2019)
Sequence version 2 (01 Mar 2004)
Previous versions | rss
Other tutorials and videosHelp videoFeedback
Protein
Submitted name:

OSJNBb0022P19.1 protein

Gene

Os04g0209300

Organism
Oryza sativa subsp. japonica (Rice)
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Function’ section describes a region in the protein which binds nucleotide phosphates. It always involves more than one amino acid and includes all residues involved in nucleotide-binding.<p><a href='/help/np_bind' target='_top'>More...</a></p>Nucleotide bindingi676 – 683ATPPROSITE-ProRule annotation8
Nucleotide bindingi1300 – 1307ATPPROSITE-ProRule annotation8

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

  • ATPase activity, coupled to transmembrane movement of substances Source: GO_Central
  • ATP binding Source: UniProtKB-UniRule
View the complete GO annotation on QuickGO ...

GO - Biological processi

View the complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

LigandATP-bindingPROSITE-ProRule annotation, Nucleotide-binding

Enzyme and pathway databases

Reactome - a knowledgebase of biological pathways and processes

More...Reactomei		R-OSA-382556 ABC-family proteins mediated transport

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
OSJNBb0022P19.1 proteinImported
Submitted name:
Os04g0209300 proteinImported
Submitted name:
cDNA clone:J013026A05, full insert sequenceImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:Os04g0209300Imported
ORF Names:OSJNBb0022P19.1Imported, OSNPB_040209300Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiOryza sativa subsp. japonica (Rice)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri39947 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › BOP clade › Oryzoideae › Oryzeae › Oryzinae › Oryza › Oryza sativa
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000059680 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 4

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular_location_section">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei38 – 57HelicalSequence analysisAdd BLAST20
Transmembranei87 – 111HelicalSequence analysisAdd BLAST25
Transmembranei123 – 140HelicalSequence analysisAdd BLAST18
Transmembranei152 – 176HelicalSequence analysisAdd BLAST25
Transmembranei188 – 207HelicalSequence analysisAdd BLAST20
Transmembranei423 – 441HelicalSequence analysisAdd BLAST19
Transmembranei447 – 467HelicalSequence analysisAdd BLAST21
Transmembranei986 – 1014HelicalSequence analysisAdd BLAST29
Transmembranei1059 – 1077HelicalSequence analysisAdd BLAST19
Transmembranei1083 – 1101HelicalSequence analysisAdd BLAST19
Transmembranei1171 – 1191HelicalSequence analysisAdd BLAST21
Transmembranei1203 – 1221HelicalSequence analysisAdd BLAST19

Keywords - Cellular componenti

Membrane

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		39947.LOC_Os04g13220.1

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini306 – 585ABC transmembrane type-1InterPro annotationAdd BLAST280
Domaini620 – 864ABC transporterInterPro annotationAdd BLAST245
Domaini948 – 1236ABC transmembrane type-1InterPro annotationAdd BLAST289
Domaini1266 – 1500ABC transporterInterPro annotationAdd BLAST235

Keywords - Domaini

RepeatSAAS annotation, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		KOG0054 Eukaryota
COG1132 LUCA

Identification of Orthologs from Complete Genome Data

More...OMAi		AWEVADC

Database of Orthologous Groups

More...OrthoDBi		138195at2759

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		1.20.1560.10, 2 hits

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR003593 AAA+_ATPase
IPR011527 ABC1_TM_dom
IPR036640 ABC1_TM_sf
IPR003439 ABC_transporter-like
IPR017871 ABC_transporter_CS
IPR027417 P-loop_NTPase

Pfam protein domain database

More...Pfami		View protein in Pfam
PF00664 ABC_membrane, 2 hits
PF00005 ABC_tran, 2 hits

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM00382 AAA, 2 hits

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF52540 SSF52540, 2 hits
SSF90123 SSF90123, 2 hits

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS50929 ABC_TM1F, 2 hits
PS00211 ABC_TRANSPORTER_1, 1 hit
PS50893 ABC_TRANSPORTER_2, 2 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q7XM41-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MALLLPGWMA TTACSPPSGG SFPDLLAFLF LSPCPQRALL GAVDLVFVVA 
        60         70         80         90        100
SLVVLALPRG GGGGAGDGPE REALLPKPRA SGRPFRVAVA LGASGVFAAA 
       110        120        130        140        150
SAILLALALF LLPNTVWRVW ESAFLAVHFV AHAVAAWTIA SRRGAAGGAL 
       160        170        180        190        200
PLQLRVFWVV TALVGALFSA SAAVRWAEDS LLFPDDPLAF AGLALSLPLV 
       210        220        230        240        250
YVAITASSGE VAGTCEREPA DVTTAAEPST PYDAASWLSR ATFSWINPLV 
       260        270        280        290        300
SKGYASDSLA AEDVPPVSPA HRAEASYARF VSNWPAQGSR YPVGVALWLS 
       310        320        330        340        350
FWPRVLLTAA LGLVRLAAMY VGPSLINHFV DFISHGGTTW EGLRLVAILV 
       360        370        380        390        400
AGKAVQTLAS HHYNFQGQLL GMRIRGALLT ALYRKSLRLS TGARRAHGSG 
       410        420        430        440        450
AIVNYMQVDA GTVSYAMHGL HGLWLMPLQI VVALVLLYAY LGPSVLMTLA 
       460        470        480        490        500
VITAVTVITA FANKLNLAYQ LKFLGVRDSR IKAITEMLNH MRVIKLQAWE 
       510        520        530        540        550
EKFGGKVREL RQTEMGWLTK IVLFMCANNV VFSSGPLAMT VLVFGTYLAT 
       560        570        580        590        600
GGELDAGKVF TATAFFSMLE GPMHNFPQTI VMCMQAFVSL GRLNKFLSDA 
       610        620        630        640        650
EIDSTAVERI ASSAGDAAAV KVQNGVFAWD VPVEGAEDAR QGHGTENGRE 
       660        670        680        690        700
EGPEMEMVLK GIEVEVRKGE LAAVVGTVGS GKSSLLSCIM GEMHKVSGTV 
       710        720        730        740        750
SICGSTACVA QTAWIQNGTI QENILFGQPM HSERYREVIH ACCLEKDLEM 
       760        770        780        790        800
MEFGDKTEIG ERGINLSGGQ KQRIQLARAV YQDCDIYLLD DIFSAVDAHT 
       810        820        830        840        850
GSAIFKECLK GILKKKTVLL VTHQVDFLKN VDTVFVMKDG VVIQSGSYNQ 
       860        870        880        890        900
LLTSCSDFSV LVTAHHSSME VPGAAEQMSH DQTTEYSQDT TVPAKSPVKS 
       910        920        930        940        950
NSSNENGGTS VAPSKEAGSS KLIEEEEKES GRVSWQVYKL YITEAWGWWG 
       960        970        980        990       1000
VLVILAVSVL SEGSSMASNY WLSYETSGGT IFDTSVFLGV YVSIVAASIV 
      1010       1020       1030       1040       1050
CDAISTLFVT FLGFKSAQVF FNKMFDSILR APMSFFDTTP SGRILSRASA 
      1060       1070       1080       1090       1100
DQMKIDTALV FYVGFATSMC ISVVSSIAVT CQVAWPSVIA VLPLVLLNIW 
      1110       1120       1130       1140       1150
YRNRYIATSR ELTRLQGVTR APVIDHFSET FLGAPTVRCF GKEDEFYQIN 
      1160       1170       1180       1190       1200
LDRINSNLRM SFHNYGANEW LGFRLELIGT LLLSITAFLM ISLPSNFIKK 
      1210       1220       1230       1240       1250
EFVGMSLSYG LSLNSLVYYT ISMTCMIEND MVAVERVNQY STLPSEAAWE 
      1260       1270       1280       1290       1300
VADCLPSPNW PRRGDIDVKD LKVRYRSNTP LILKGITISI NSGEKIGVVG 
      1310       1320       1330       1340       1350
RTGSGKSTLV QALFRLVEPV EGHIIVDGVD IGTLGLHDLR SRFGVIPQEP 
      1360       1370       1380       1390       1400
VLFEGTIRSN IDPIGRYSED EIWQALERCQ LKDIVATKPE KLDALVADMG 
      1410       1420       1430       1440       1450
ENWSVGQKQL LCFGRVILKR SRILFMDEAT ASVDSQTDAT IQRIIREEFT 
      1460       1470       1480       1490       1500
DCTIISIAHR IPTVMDSDRV LVLDAGLVKE FDEPSKLMGR PSLFRAMVQE 
      1510 
YANRSYSTEA RD
Length:1,512
Mass (Da):164,398
Last modified:March 1, 2004 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iF98577EBDA523D52
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AP008210 Genomic DNA Translation: BAF14166.1
AK120122 mRNA Translation: BAG99882.1
AP014960 Genomic DNA Translation: BAS88126.1
AL663001 Genomic DNA Translation: CAE04806.2

NCBI Reference Sequences

More...RefSeqi		XP_015636527.1, XM_015781041.1

UniGene gene-oriented nucleotide sequence clusters

More...UniGenei		Os.23745

Genome annotation databases

Ensembl plant genome annotation project

More...EnsemblPlantsi		Os04t0209300-01; Os04t0209300-01; Os04g0209300

Database of genes from NCBI RefSeq genomes

More...GeneIDi		4335177

Gramene; a comparative resource for plants

More...Gramenei		Os04t0209300-01; Os04t0209300-01; Os04g0209300

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		osa:4335177

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008210 Genomic DNA Translation: BAF14166.1
AK120122 mRNA Translation: BAG99882.1
AP014960 Genomic DNA Translation: BAS88126.1
AL663001 Genomic DNA Translation: CAE04806.2
RefSeqiXP_015636527.1, XM_015781041.1
UniGeneiOs.23745

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

Protein-protein interaction databases

STRINGi39947.LOC_Os04g13220.1

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOs04t0209300-01; Os04t0209300-01; Os04g0209300
GeneIDi4335177
GrameneiOs04t0209300-01; Os04t0209300-01; Os04g0209300
KEGGiosa:4335177

Phylogenomic databases

eggNOGiKOG0054 Eukaryota
COG1132 LUCA
OMAiAWEVADC
OrthoDBi138195at2759

Enzyme and pathway databases

ReactomeiR-OSA-382556 ABC-family proteins mediated transport

Family and domain databases

Gene3Di1.20.1560.10, 2 hits
InterProiView protein in InterPro
IPR003593 AAA+_ATPase
IPR011527 ABC1_TM_dom
IPR036640 ABC1_TM_sf
IPR003439 ABC_transporter-like
IPR017871 ABC_transporter_CS
IPR027417 P-loop_NTPase
PfamiView protein in Pfam
PF00664 ABC_membrane, 2 hits
PF00005 ABC_tran, 2 hits
SMARTiView protein in SMART
SM00382 AAA, 2 hits
SUPFAMiSSF52540 SSF52540, 2 hits
SSF90123 SSF90123, 2 hits
PROSITEiView protein in PROSITE
PS50929 ABC_TM1F, 2 hits
PS00211 ABC_TRANSPORTER_1, 1 hit
PS50893 ABC_TRANSPORTER_2, 2 hits

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ7XM41_ORYSJ
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q7XM41
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: October 1, 2003
Last sequence update: March 1, 2004
Last modified: January 16, 2019
This is version 146 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again