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Protein

Probable E3 ubiquitin-protein ligase XBOS34

Gene

XBOS34

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Catalytic activityi

S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N6-ubiquitinyl-[acceptor protein]-L-lysine.

Pathwayi: protein ubiquitination

This protein is involved in the pathway protein ubiquitination, which is part of Protein modification.
View all proteins of this organism that are known to be involved in the pathway protein ubiquitination and in Protein modification.

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri462 – 501RING-typePROSITE-ProRule annotationAdd BLAST40

GO - Molecular functioni

Keywordsi

Molecular functionTransferase
Biological processUbl conjugation pathway
LigandMetal-binding, Zinc

Enzyme and pathway databases

UniPathwayiUPA00143

Names & Taxonomyi

Protein namesi
Recommended name:
Probable E3 ubiquitin-protein ligase XBOS34 (EC:2.3.2.27)
Alternative name(s):
Ankyrin repeat domain and RING finger-containing protein XBOS34
RING-type E3 ubiquitin transferase XBOS34
XB3 protein homolog 4
Gene namesi
Name:XBOS34
Ordered Locus Names:Os07g0446100, LOC_Os07g26490
ORF Names:P0030H06.109-1, P0030H06.109-2
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
Proteomesi
  • UP000059680 Componenti: Chromosome 7

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003957481 – 513Probable E3 ubiquitin-protein ligase XBOS34Add BLAST513

Proteomic databases

PaxDbiQ7XI08
PRIDEiQ7XI08

Expressioni

Gene expression databases

ExpressionAtlasiQ7XI08 differential
GenevisibleiQ7XI08 OS

Interactioni

GO - Molecular functioni

Structurei

3D structure databases

ProteinModelPortaliQ7XI08
SMRiQ7XI08
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati39 – 69ANK 1Add BLAST31
Repeati75 – 104ANK 2Add BLAST30
Repeati108 – 137ANK 3Add BLAST30

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri462 – 501RING-typePROSITE-ProRule annotationAdd BLAST40

Keywords - Domaini

ANK repeat, Repeat, Zinc-finger

Phylogenomic databases

eggNOGiENOG410IFCZ Eukaryota
ENOG410XNPA LUCA
HOGENOMiHOG000242293
InParanoidiQ7XI08
OMAiCGWMREN
OrthoDBiEOG093609ME

Family and domain databases

CDDicd00204 ANK, 1 hit
Gene3Di1.25.40.20, 1 hit
3.30.40.10, 1 hit
InterProiView protein in InterPro
IPR002110 Ankyrin_rpt
IPR020683 Ankyrin_rpt-contain_dom
IPR036770 Ankyrin_rpt-contain_sf
IPR001841 Znf_RING
IPR013083 Znf_RING/FYVE/PHD
PfamiView protein in Pfam
PF00023 Ank, 1 hit
SMARTiView protein in SMART
SM00248 ANK, 3 hits
SM00184 RING, 1 hit
SUPFAMiSSF48403 SSF48403, 1 hit
PROSITEiView protein in PROSITE
PS50297 ANK_REP_REGION, 1 hit
PS50088 ANK_REPEAT, 2 hits
PS50089 ZF_RING_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q7XI08-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGLQQSKEEL VYQQVNYGNA DGIRALRAQG AGLEWIDKEG KTPLMVASMR
60 70 80 90 100
PDLINVVQVL IELGANVNAY RPGSYCGTAL HHAAKKGLEQ TVHLLLSHGA
110 120 130 140 150
NPFITNDDCH TALDLAREKG HVNVVRAIEG RISLFCGWMR ENYGPGFLEA
160 170 180 190 200
FAPQFLTRKI WAVILPREAR NQTRPLKLEL TIYPELQASK PQAVIKLWKC
210 220 230 240 250
QLEEPKFNQA NPSVTIFDKG TRTRYKLLPV CEGDKQQLQW FYSACCGIPQ
260 270 280 290 300
VASMVPAQPA NAPLPNPSSA SSLPSVISTP SKEDAELAMA INASILSAIA
310 320 330 340 350
EGVPDVQPIT TTTATNDWGN PPSNSLNGWG PPDTSAPSKT SGQVPVVTSS
360 370 380 390 400
SSTYNGWDVP GTSSGQSSSK HNKSQNSTFV VPQEALPSLP VPTAPPLAVG
410 420 430 440 450
TFYDGPIQYP SIDSTPVDVT MPSADGGTAV SSAKPAENEG DAKPAESDAN
460 470 480 490 500
ASNSGNTPPG TCVICLDAPV EGACIPCGHM AGCMSCLKDI ESKKWGCPIC
510
RAKINQIIRL YAV
Length:513
Mass (Da):54,729
Last modified:October 1, 2003 - v1
Checksum:iDC80CDED10D38017
GO

Sequence cautioni

The sequence AK100927 differs from that shown. Reason: Frameshift at position 321.Curated
The sequence BAC79950 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP004395 Genomic DNA Translation: BAC79949.1
AP004395 Genomic DNA Translation: BAC79950.1 Sequence problems.
AP008213 Genomic DNA Translation: BAF21449.1
AP014963 Genomic DNA Translation: BAT01291.1
AK100927 mRNA No translation available.
RefSeqiXP_015647431.1, XM_015791945.1
UniGeneiOs.10124

Genome annotation databases

EnsemblPlantsiOs07t0446100-01; Os07t0446100-01; Os07g0446100
GeneIDi4343110
GrameneiOs07t0446100-01; Os07t0446100-01; Os07g0446100
KEGGiosa:4343110

Similar proteinsi

Entry informationi

Entry nameiXB34_ORYSJ
AccessioniPrimary (citable) accession number: Q7XI08
Secondary accession number(s): A0A0P0X5W8, Q7XI07
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 13, 2010
Last sequence update: October 1, 2003
Last modified: May 23, 2018
This is version 113 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations

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