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Entry version 125 (18 Sep 2019)
Sequence version 1 (01 Oct 2003)
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Protein

Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1

Gene

PIE1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant H2A.F/Z leading to transcriptional regulation of selected genes (e.g. FLC) by chromatin remodeling. Probable DNA-dependent ATPase. Not involved in the repression of FLC in gametophytes, but required for the reactivation of FLC in early embryos and for the maintenance of full activation of FLC in late embryos.4 Publications

<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes a region in the protein which binds nucleotide phosphates. It always involves more than one amino acid and includes all residues involved in nucleotide-binding.<p><a href='/help/np_bind' target='_top'>More...</a></p>Nucleotide bindingi561 – 568ATPPROSITE-ProRule annotation8

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionChromatin regulator, Developmental protein, DNA-binding, Helicase, Hydrolase
Biological processDifferentiation, Flowering
LigandATP-binding, Nucleotide-binding

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 (EC:3.6.4.12)
Alternative name(s):
Independent early flowering 1 protein
Protein CHROMATIN REMODELING 131 Publication
Short name:
AtCHR13
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:PIE1
Synonyms:CHR131 Publication
Ordered Locus Names:At3g12810
ORF Names:MBK21.19
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 3

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT3G12810

The Arabidopsis Information Resource

More...
TAIRi
locus:2087780 AT3G12810

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This subsection of the ‘Pathology and Biotech’ section describes the in vivo effects caused by ablation of the gene (or one or more transcripts) coding for the protein described in the entry. This includes gene knockout and knockdown, provided experiments have been performed in the context of a whole organism or a specific tissue, and not at the single-cell level.<p><a href='/help/disruption_phenotype' target='_top'>More...</a></p>Disruption phenotypei

Early flowering. Loss of H2A.Z from chromatin.2 Publications

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004237291 – 2055Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1Add BLAST2055

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q7X9V2

PRoteomics IDEntifications database

More...
PRIDEi
Q7X9V2

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
Q7X9V2

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the ‘Expression’ section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified ‘at protein level’. <br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Expressed in ovules, but not in stamens.1 Publication

<p>This subsection of the ‘Expression’ section reports the experimentally proven effects of inducers and repressors (usually chemical compounds or environmental factors) on the level of protein (or mRNA) expression (up-regulation, down-regulation, constitutive expression).<p><a href='/help/induction' target='_top'>More...</a></p>Inductioni

Not regulated by vernalization.1 Publication

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q7X9V2 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q7X9V2 AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Component of the SWR1 chromatin-remodeling complex composed of at least ARP6/ESD1/SUF3, PIE1, SWC6, SWC2 and H2AZs (HTA8, HTA9, HTA11).

Interacts (via c-terminus) with SWC6 and ARP6 and (via N-terminus) with H2AZs.

4 Publications

<p>This subsection of the '<a href="http://www.uniprot.org/help/interaction_section%27">Interaction</a> section provides information about binary protein-protein interactions. The data presented in this section are a quality-filtered subset of binary interactions automatically derived from the <a href="http://www.ebi.ac.uk/intact/">IntAct database</a>. It is updated on a monthly basis. Each binary interaction is displayed on a separate line.<p><a href='/help/binary_interactions' target='_top'>More...</a></p>Binary interactionsi

GO - Molecular functioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

More...
BioGridi
5797, 7 interactors

Protein interaction database and analysis system

More...
IntActi
Q7X9V2, 6 interactors

STRING: functional protein association networks

More...
STRINGi
3702.AT3G12810.1

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini35 – 107HSAPROSITE-ProRule annotationAdd BLAST73
Domaini548 – 713Helicase ATP-bindingPROSITE-ProRule annotationAdd BLAST166
Domaini1076 – 1229Helicase C-terminalPROSITE-ProRule annotationAdd BLAST154
Domaini1673 – 1727Myb-likePROSITE-ProRule annotationAdd BLAST55

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and domains’ section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili78 – 147Sequence analysisAdd BLAST70
Coiled coili229 – 250Sequence analysisAdd BLAST22
Coiled coili392 – 416Sequence analysisAdd BLAST25
Coiled coili1419 – 1492Sequence analysisAdd BLAST74
Coiled coili2006 – 2029Sequence analysisAdd BLAST24

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a short (usually not more than 20 amino acids) conserved sequence motif of biological significance.<p><a href='/help/motif' target='_top'>More...</a></p>Motifi29 – 36Nuclear localization signal 1PROSITE-ProRule annotation8
Motifi664 – 667DEAH box4
Motifi1506 – 1513Nuclear localization signal 2PROSITE-ProRule annotation8
Motifi1570 – 1577Nuclear localization signal 3PROSITE-ProRule annotation8

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi135 – 138Poly-Lys4
Compositional biasi181 – 257Glu-richAdd BLAST77
Compositional biasi503 – 509Poly-Ala7
Compositional biasi1373 – 1379Poly-Ala7
Compositional biasi1410 – 1491Glu-richAdd BLAST82
Compositional biasi1504 – 1659Lys-richPROSITE-ProRule annotationAdd BLAST156
Compositional biasi2009 – 2015Poly-Glu7

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Keywords - Domaini

Coiled coil, Repeat

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG0391 Eukaryota
ENOG410XP0A LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000083197

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q7X9V2

KEGG Orthology (KO)

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KOi
K11320

Identification of Orthologs from Complete Genome Data

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OMAi
NDESDHT

Database of Orthologous Groups

More...
OrthoDBi
188211at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q7X9V2

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.40.50.10810, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR014012 HSA_dom
IPR017877 Myb-like_dom
IPR027417 P-loop_NTPase
IPR038718 SNF2-like_sf
IPR000330 SNF2_N

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00271 Helicase_C, 1 hit
PF07529 HSA, 1 hit
PF00176 SNF2_N, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00487 DEXDc, 1 hit
SM00490 HELICc, 1 hit
SM00573 HSA, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF52540 SSF52540, 2 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit
PS51204 HSA, 1 hit
PS50090 MYB_LIKE, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

Q7X9V2-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MASKGGKSKP DIVMASKSGK SKPDNESRAK RQKTLEAPKE PRRPKTHWDH
60 70 80 90 100
VLEEMAWLSK DFESERKWKL AQAKKVALRA SKGMLDQASR EERKLKEEEQ
110 120 130 140 150
RLRKVALNIS KDMKKFWMKV EKLVLYKHQL VRNEKKKKAM DKQLEFLLGQ
160 170 180 190 200
TERYSTMLAE NLVEPYKQGQ NTPSKPLLTI ESKSDEERAE QIPPEINSSA
210 220 230 240 250
GLESGSPELD EDYDLKSEDE TEDDEDTIEE DEKHFTKRER QEELEALQNE
260 270 280 290 300
VDLPVEELLR RYTSGRVSRE TSPVKDENED NLTSVSRVTS PVKDENQDNL
310 320 330 340 350
ASVGQDHGED KNNLAASEET EGNPSVRRSN DSYGHLAISE THSHDLEPGM
360 370 380 390 400
TTASVKSRKE DHTYDFNDEQ EDVDFVLANG EEKDDEATLA VEEELAKADN
410 420 430 440 450
EDHVEEIALL QKESEMPIEV LLARYKEDFG GKDISEDESE SSFAVSEDSI
460 470 480 490 500
VDSDENRQQA DLDDDNVDLT ECKLDPEPCS ENVEGTFHEV AEDNDKDSSD
510 520 530 540 550
KIADAAAAAR SAQPTGFTYS TTKVRTKLPF LLKHSLREYQ HIGLDWLVTM
560 570 580 590 600
YEKKLNGILA DEMGLGKTIM TIALLAHLAC DKGIWGPHLI VVPTSVMLNW
610 620 630 640 650
ETEFLKWCPA FKILTYFGSA KERKLKRQGW MKLNSFHVCI TTYRLVIQDS
660 670 680 690 700
KMFKRKKWKY LILDEAHLIK NWKSQRWQTL LNFNSKRRIL LTGTPLQNDL
710 720 730 740 750
MELWSLMHFL MPHVFQSHQE FKDWFCNPIA GMVEGQEKIN KEVIDRLHNV
760 770 780 790 800
LRPFLLRRLK RDVEKQLPSK HEHVIFCRLS KRQRNLYEDF IASTETQATL
810 820 830 840 850
TSGSFFGMIS IIMQLRKVCN HPDLFEGRPI VSSFDMAGID VQLSSTICSL
860 870 880 890 900
LLESPFSKVD LEALGFLFTH LDFSMTSWEG DEIKAISTPS ELIKQRVNLK
910 920 930 940 950
DDLEAIPLSP KNRKNLQGTN IFEEIRKAVF EERIQESKDR AAAIAWWNSL
960 970 980 990 1000
RCQRKPTYST SLRTLLTIKG PLDDLKANCS SYMYSSILAD IVLSPIERFQ
1010 1020 1030 1040 1050
KMIELVEAFT FAIPAARVPS PTCWCSKSDS PVFLSPSYKE KVTDLLSPLL
1060 1070 1080 1090 1100
SPIRPAIVRR QVYFPDRRLI QFDCGKLQEL AMLLRKLKFG GHRALIFTQM
1110 1120 1130 1140 1150
TKMLDVLEAF INLYGYTYMR LDGSTPPEER QTLMQRFNTN PKIFLFILST
1160 1170 1180 1190 1200
RSGGVGINLV GADTVIFYDS DWNPAMDQQA QDRCHRIGQT REVHIYRLIS
1210 1220 1230 1240 1250
ESTIEENILK KANQKRVLDN LVIQNGEYNT EFFKKLDPME LFSGHKALTT
1260 1270 1280 1290 1300
KDEKETSKHC GADIPLSNAD VEAALKQAED EADYMALKRV EQEEAVDNQE
1310 1320 1330 1340 1350
FTEEPVERPE DDELVNEDDI KADEPADQGL VAAGPAKEEM SLLHSDIRDE
1360 1370 1380 1390 1400
RAVITTSSQE DDTDVLDDVK QMAAAAADAG QAISSFENQL RPIDRYAIRF
1410 1420 1430 1440 1450
LELWDPIIVE AAMENEAGFE EKEWELDHIE KYKEEMEAEI DDGEEPLVYE
1460 1470 1480 1490 1500
KWDADFATEA YRQQVEVLAQ HQLMEDLENE AREREAAEVA EMVLTQNESA
1510 1520 1530 1540 1550
HVLKPKKKKK AKKAKYKSLK KGSLAAESKH VKSVVKIEDS TDDDNEEFGY
1560 1570 1580 1590 1600
VSSSDSDMVT PLSRMHMKGK KRDLIVDTDE EKTSKKKAKK HKKSLPNSDI
1610 1620 1630 1640 1650
KYKQTSALLD ELEPSKPSDS MVVDNELKLT NRGKTVGKKF ITSMPIKRVL
1660 1670 1680 1690 1700
MIKPEKLKKG NLWSRDCVPS PDSWLPQEDA ILCAMVHEYG PNWNFVSGTL
1710 1720 1730 1740 1750
YGMTAGGAYR GRYRHPAYCC ERYRELIQRH ILSASDSAVN EKNLNTGSGK
1760 1770 1780 1790 1800
ALLKVTEENI RTLLNVAAEQ PDTEMLLQKH FSCLLSSIWR TSTRTGNDQM
1810 1820 1830 1840 1850
LSLNSPIFNR QFMGSVNHTQ DLARKPWQGM KVTSLSRKLL ESALQDSGPS
1860 1870 1880 1890 1900
QPDNTISRSR LQETQPINKL GLELTLEFPR GNDDSLNQFP PMISLSIDGS
1910 1920 1930 1940 1950
DSLNYVNEPP GEDVLKGSRV AAENRYRNAA NACIEDSFGW ASNTFPANDL
1960 1970 1980 1990 2000
KSRTGTKAQS LGKHKLSASD SAKSTKSKHR KLLAEQLEGA WVRPNDPNLK
2010 2020 2030 2040 2050
FDFTPGDREE EEEQEVDEKA NSAEIEMISC SQWYDPFFTS GLDDCSLASD

ISEIE
Length:2,055
Mass (Da):234,048
Last modified:October 1, 2003 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iED38EC3C67D7F776
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A1I9LQH7A0A1I9LQH7_ARATH
SNF2 domain-containing protein / he...
PIE1 chr13, SRCAP, At3g12810
2,051Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence BAB02425 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AY279398 mRNA Translation: AAP40633.1
AB024033 Genomic DNA Translation: BAB02425.1 Sequence problems.
CP002686 Genomic DNA Translation: AEE75248.1

NCBI Reference Sequences

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RefSeqi
NP_187887.3, NM_112117.5

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT3G12810.1; AT3G12810.1; AT3G12810

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
820463

Gramene; a comparative resource for plants

More...
Gramenei
AT3G12810.1; AT3G12810.1; AT3G12810

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT3G12810

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY279398 mRNA Translation: AAP40633.1
AB024033 Genomic DNA Translation: BAB02425.1 Sequence problems.
CP002686 Genomic DNA Translation: AEE75248.1
RefSeqiNP_187887.3, NM_112117.5

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

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SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

BioGridi5797, 7 interactors
IntActiQ7X9V2, 6 interactors
STRINGi3702.AT3G12810.1

PTM databases

iPTMnetiQ7X9V2

Proteomic databases

PaxDbiQ7X9V2
PRIDEiQ7X9V2

Genome annotation databases

EnsemblPlantsiAT3G12810.1; AT3G12810.1; AT3G12810
GeneIDi820463
GrameneiAT3G12810.1; AT3G12810.1; AT3G12810
KEGGiath:AT3G12810

Organism-specific databases

AraportiAT3G12810
TAIRilocus:2087780 AT3G12810

Phylogenomic databases

eggNOGiKOG0391 Eukaryota
ENOG410XP0A LUCA
HOGENOMiHOG000083197
InParanoidiQ7X9V2
KOiK11320
OMAiNDESDHT
OrthoDBi188211at2759
PhylomeDBiQ7X9V2

Miscellaneous databases

Protein Ontology

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PROi
PR:Q7X9V2

Gene expression databases

ExpressionAtlasiQ7X9V2 baseline and differential
GenevisibleiQ7X9V2 AT

Family and domain databases

Gene3Di3.40.50.10810, 1 hit
InterProiView protein in InterPro
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR014012 HSA_dom
IPR017877 Myb-like_dom
IPR027417 P-loop_NTPase
IPR038718 SNF2-like_sf
IPR000330 SNF2_N
PfamiView protein in Pfam
PF00271 Helicase_C, 1 hit
PF07529 HSA, 1 hit
PF00176 SNF2_N, 1 hit
SMARTiView protein in SMART
SM00487 DEXDc, 1 hit
SM00490 HELICc, 1 hit
SM00573 HSA, 1 hit
SUPFAMiSSF52540 SSF52540, 2 hits
PROSITEiView protein in PROSITE
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit
PS51204 HSA, 1 hit
PS50090 MYB_LIKE, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiPIE1_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q7X9V2
Secondary accession number(s): Q9LTV5
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 16, 2013
Last sequence update: October 1, 2003
Last modified: September 18, 2019
This is version 125 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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