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Entry version 78 (02 Jun 2021)
Sequence version 1 (15 Dec 2003)
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Protein
Submitted name:

Putative type III effector HolPtoACPsy

Gene

Psyr_0527

Organism
Pseudomonas syringae pv. syringae (strain B728a)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Putative type III effector HolPtoACPsyImported
Submitted name:
Type III effector HopAC1Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:Psyr_0527Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiPseudomonas syringae pv. syringae (strain B728a)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri205918 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonasPseudomonas syringae
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000426 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini1360 – 1422MLDInterPro annotationAdd BLAST63
Domaini1731 – 1792MLDInterPro annotationAdd BLAST62

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 21DisorderedSequence analysisAdd BLAST21
Regioni1260 – 1279DisorderedSequence analysisAdd BLAST20

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG5032TIZ, Bacteria

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_001739_0_0_6

Identification of Orthologs from Complete Genome Data

More...
OMAi
WLADEYI

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR020972, Dermonecrotic/RTX_toxin_MLD

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF11647, MLD, 2 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q7PC42-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTQTPPSLDF NLSTPSPVPM TPSDTWAGAS AALKRLDELR TLLARELDAL
60 70 80 90 100
PQAGEALLSA LDGADVSERE LQIFGLLQQI DDYWTDPGET GESRRDRLLP
110 120 130 140 150
ALQRSLHDEA RVRIHERDFD SGYLACLPDS PDQEGPALAY STVRVQLHDD
160 170 180 190 200
EQIEMAGVLV ISQDQGRTLL MLPGLGISGF ATQAMLVATL VQWLNTPTLR
210 220 230 240 250
DALLSNAQRQ HQERLTEILQ DADLYLEPFT AADVQLQPVV TTAPFIHAFD
260 270 280 290 300
RLLNKQRNDI RYACEQPGTA DRLKRQSLIQ QAIDMPGLFG PAAMLELREL
310 320 330 340 350
TNRRRQYQRN LPEWMKIASA ADLQTYALHL QRYDAAHTAM LSVLGSAASP
360 370 380 390 400
ERFAEMQLRT RLANDLGHDL DPRDLTIDTR RTLPATSETY RVKLPLTELA
410 420 430 440 450
LYGLHPDDET AGSDFLDQTL ITLDGQPLDA AYSDLNPAYL ARVIDELDLR
460 470 480 490 500
AVFGDFQRQA YQQEHNQQML RALARVRLTT LGWAAKMQGH IRPDDFAIVA
510 520 530 540 550
ALTSAATGTH DPALRVQQIR LNDRNVMARL LVCRKQDAQG RTQRLIMFAS
560 570 580 590 600
EAPGQQYFKA FDTDTQLLHE MVGWTASPAM TAWLLDQVEV AARPELAAQL
610 620 630 640 650
TALREKPQPA KDFLQFIDHP DCETALRRFT DEQTRVLLSE QARHTPDWYL
660 670 680 690 700
RASRAQRREL LALERAINGA LDNYQAQAHT GVQSFKDYVH QRASQQLGKL
710 720 730 740 750
LGVPAGTVDP DQIVITSERE TQTYTDMLLK GYNDSIDPLS TSAATDATFS
760 770 780 790 800
GPPGIDLSAL SPAAVAGSVR GQWLADEYIA LIRNTLLNSE NDGYAYRRQY
810 820 830 840 850
SVMITQLQMK AAALRSLLKG HVEAAQYAWL TQSLDNAHLS DPASRERYPL
860 870 880 890 900
YPLQIHVDKP LIASGLTDVD QLVIPSPLLT HIETVQGCLV ILPTQIRHAA
910 920 930 940 950
LLYTPQAPDG IEFRLFSDFV SSLNSEGMID YYKDRCRIKA RRTLSFFLRD
960 970 980 990 1000
MQKGNANKPP VIPRAFIADV ADTCFNRPLE RRLRDVEETT TGRNDMLTKL
1010 1020 1030 1040 1050
IRVSVEIVAT ALTLPFPPAS FAVGSLISLH DSGQALAALS AGDRERATNY
1060 1070 1080 1090 1100
MLSALLNGLG AGSDLLVGLK GLGGALHQLE NSQHSTPVLR SFQRQPSLPR
1110 1120 1130 1140 1150
YEDLYPVELQ EQVFLLGKPN VHGHAAIFQA SHVASAPPLA TGQFAAREIG
1160 1170 1180 1190 1200
GAWQPLLPLP PTAQRAPSGL RIDLAVDISL ENVPRIAEGH AKGVHAINGK
1210 1220 1230 1240 1250
YYIQLSDQAF EVQYDAYWQY WQIIDPANPF AFFGKQPVRL NDQGQWLLVE
1260 1270 1280 1290 1300
RQRLRGGGLD TPGTYRPLPE QASASSSSLN TLSDYEMPSG MRAHLDIVIN
1310 1320 1330 1340 1350
KEVFDPTGAG LDVYFETYFT EVRQTFTARR EQLYQDAQAF FARFTPPPRP
1360 1370 1380 1390 1400
TLPAYGLPGS VDTLIKHIFS HSNGLVFSEA PKSVASKRLL LLNMPLLAEQ
1410 1420 1430 1440 1450
RVEVLYIEHL LTDKHLRKLA RYRQLGKKSR SGSHELKYYL QETNRGALNN
1460 1470 1480 1490 1500
ASSEFDYYHL IKAAHRYGIE VRPLSSSISY PFLGHTVLSA ADDPAAAMKM
1510 1520 1530 1540 1550
SNFFGHRLIN HDIEPASARR WVALLDQKLA TTHDQVPGIA EMQGAVSVQV
1560 1570 1580 1590 1600
QDIPAGRPTR IRQGAGEAHE NTPSHCDFSI AFADPTLPAR PLPPATALDN
1610 1620 1630 1640 1650
TLIRELGDPT AIAEGERWAG EYGFVLDENH TWLRVEADDW SVDRSMTAIQ
1660 1670 1680 1690 1700
QSLTDATYEM PPDTRTTLHR LANFEKKGLD MEYFFEDIEL DTVRNTFDLR
1710 1720 1730 1740 1750
RKNLQKDAAS ISAAQLPPRP TLPAIEPQTS TAGLLETLYR HTEGLVIGES
1760 1770 1780 1790 1800
HSSVASKKLI IDNLPLLSQQ NVKTLYMEHL LSDLHQADLD RFLETGQMSK
1810 1820 1830 1840 1850
TLLHDLKTLD RGHHTDPNGV YTFEQLVIRA RQQGLEIRAI DCASSYHLKG
1860 1870 1880 1890 1900
IAEDEPLIRQ QMMNYFASRT IRRHQDVMGS HKWIALVGNS HSNTYQGVVP
1910 1920 1930 1940 1950
GIAELEGGIG LRVVDVAPGH SRGITLDQGE LVSGGIADDK VYIKADYRVE
1960 1970 1980 1990 2000
MEVPRPQPAR LPSIEKRLSR PGMFLVQEGE GNLQTIVHRA RDTWIHRTPV
2010 2020 2030 2040
LRNAEGKLYI ERLRWPRIHL KPFDDIDALV AALEAMNLTR AT
Length:2,042
Mass (Da):227,873
Last modified:December 15, 2003 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i18CBEFC6A6CB9A49
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CP000075 Genomic DNA Translation: AAY35597.1
BK000955 Genomic DNA Translation: DAA00390.1

NCBI Reference Sequences

More...
RefSeqi
WP_011266466.1, NC_007005.1
YP_233635.1, NC_007005.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
AAY35597; AAY35597; Psyr_0527

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
psb:Psyr_0527

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|205918.7.peg.549

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000075 Genomic DNA Translation: AAY35597.1
BK000955 Genomic DNA Translation: DAA00390.1
RefSeqiWP_011266466.1, NC_007005.1
YP_233635.1, NC_007005.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Genome annotation databases

EnsemblBacteriaiAAY35597; AAY35597; Psyr_0527
KEGGipsb:Psyr_0527
PATRICifig|205918.7.peg.549

Phylogenomic databases

eggNOGiENOG5032TIZ, Bacteria
HOGENOMiCLU_001739_0_0_6
OMAiWLADEYI

Family and domain databases

InterProiView protein in InterPro
IPR020972, Dermonecrotic/RTX_toxin_MLD
PfamiView protein in Pfam
PF11647, MLD, 2 hits

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ7PC42_PSEU2
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q7PC42
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: December 15, 2003
Last sequence update: December 15, 2003
Last modified: June 2, 2021
This is version 78 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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