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Protein

Ribosomal RNA small subunit methyltransferase F

Gene

rsmF

Organism
Vibrio vulnificus (strain YJ016)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA.UniRule annotation

Catalytic activityi

S-adenosyl-L-methionine + cytosine(1407) in 16S rRNA = S-adenosyl-L-homocysteine + 5-methylcytosine(1407) in 16S rRNA.UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei147S-adenosyl-L-methionineUniRule annotation1
Binding sitei174S-adenosyl-L-methionineUniRule annotation1
Binding sitei192S-adenosyl-L-methionineUniRule annotation1
Active sitei245NucleophileUniRule annotation1

GO - Molecular functioni

Keywordsi

Molecular functionMethyltransferase, RNA-binding, Transferase
Biological processrRNA processing
LigandS-adenosyl-L-methionine

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosomal RNA small subunit methyltransferase FUniRule annotation (EC:2.1.1.178UniRule annotation)
Alternative name(s):
16S rRNA m5C1407 methyltransferaseUniRule annotation
rRNA (cytosine-C(5)-)-methyltransferase RsmFUniRule annotation
Gene namesi
Name:rsmFUniRule annotation
Ordered Locus Names:VV1641
OrganismiVibrio vulnificus (strain YJ016)
Taxonomic identifieri196600 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
Proteomesi
  • UP000002675 Componenti: Chromosome I

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002850261 – 472Ribosomal RNA small subunit methyltransferase FAdd BLAST472

Structurei

3D structure databases

ProteinModelPortaliQ7MKY6
SMRiQ7MKY6
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni123 – 129S-adenosyl-L-methionine bindingUniRule annotation7

Sequence similaritiesi

Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000218115
KOiK11392
OMAiDPLFHAG
OrthoDBiPOG091H02E2

Family and domain databases

HAMAPiMF_01579 16SrRNA_methyltr_F, 1 hit
InterProiView protein in InterPro
IPR018314 Fmu/NOL1/Nop2p_CS
IPR031341 Methyltr_RsmF_N
IPR001678 MeTrfase_RsmB/NOP2
IPR027391 Nol1_Nop2_Fmu_2
IPR011023 Nop2p
IPR023267 RCMT
IPR023545 rRNA_ssu_MeTfrase_F
IPR029063 SAM-dependent_MTases
PfamiView protein in Pfam
PF01189 Methyltr_RsmB-F, 1 hit
PF17125 Methyltr_RsmF_N, 1 hit
PF13636 Methyltranf_PUA, 1 hit
PRINTSiPR02008 RCMTFAMILY
SUPFAMiSSF53335 SSF53335, 1 hit
TIGRFAMsiTIGR00446 nop2p, 1 hit
PROSITEiView protein in PROSITE
PS01153 NOL1_NOP2_SUN, 1 hit
PS51686 SAM_MT_RSMB_NOP, 1 hit

Sequencei

Sequence statusi: Complete.

Q7MKY6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MHSNVYLPET FLEKIKTILP SALNMDDFIA YCQQPLRKSI RVNTLKISVD
60 70 80 90 100
AFLTIAQEKG WTLHPVPWCE TGFWIEADES KVPLGNTAEH MCGLFYIQEA
110 120 130 140 150
SSMMPVSALF LGENQFESVL DTAAAPGSKT TQIAALMNNQ GILVANEYAA
160 170 180 190 200
SRVKVLHANI ERCGVRNAAL SNFDGRVFGG WLPESFDAVL LDAPCSGEGT
210 220 230 240 250
VRKDEDAMKN WSQESVLEIA ATQKDLIESA FQALKPGGVM VYSTCTLSEE
260 270 280 290 300
ENQQVCHHLK HTFGDAVAFE SLSSLFDGAE KALTEDGFLH IFPQVYDSEG
310 320 330 340 350
FFVARIRKLA SVNSPDVNKK MGKFPFQKAS KKESALIEKS LSDSLDISLP
360 370 380 390 400
ADSTIWLRDN DVWLFPNALE PMLGELRFSR MGIKLAEKHK NGYRWQHQIA
410 420 430 440 450
TTLASGDEKT VVDIDTDAAR EWFMGRDIYP ENSGKGEVFV RYQGAIIGLG
460 470
KWVSNKIKNG LPRELVRDKN LF
Length:472
Mass (Da):52,548
Last modified:May 1, 2007 - v2
Checksum:i26EA702191D33857
GO

Sequence cautioni

The sequence BAC94405 differs from that shown. Reason: Erroneous initiation.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000037 Genomic DNA Translation: BAC94405.1 Different initiation.
RefSeqiWP_011080492.1, NC_005139.1

Genome annotation databases

EnsemblBacteriaiBAC94405; BAC94405; BAC94405
GeneIDi2624447
KEGGivvy:VV1641
PATRICifig|196600.6.peg.1620

Similar proteinsi

Entry informationi

Entry nameiRSMF_VIBVY
AccessioniPrimary (citable) accession number: Q7MKY6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 1, 2007
Last sequence update: May 1, 2007
Last modified: June 7, 2017
This is version 91 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

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