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UniProtKB - Q7BBY7 (Q7BBY7_STAAU)

Entry version 84 (10 Feb 2021)
Sequence version 1 (05 Jul 2004)
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Protein
Submitted name:

Pathogenicity island protein

Gene

ERS072840_02264

Organism
Staphylococcus aureus
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Pathogenicity island proteinImported
Submitted name:
Spore coat proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:ERS072840_02264Imported, GF545_08245Imported, GO803_08275Imported, NCTC10654_00944Imported, NCTC10702_01382Imported, NCTC10988_01054Imported, SAMEA103891215_00048Imported, SAMEA103891321_02312Imported, SAMEA103891571_02260Imported, SAMEA1531680_02723Imported, SAST44_03923Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiStaphylococcus aureusImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri1280 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Firmicutes › Bacilli › Bacillales › Staphylococcaceae › Staphylococcus
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000505270 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence
  • UP000250228 Componenti: Unassembled WGS sequence
  • UP000432849 Componenti: Unassembled WGS sequence
  • UP000443443 Componenti: Unassembled WGS sequence
  • UP000427534 Componenti: Chromosome
  • UP000505252 Componenti: Unassembled WGS sequence
  • UP000255075 Componenti: Unassembled WGS sequence
  • UP000254116 Componenti: Unassembled WGS sequence
  • UP000249906 Componenti: Unassembled WGS sequence
  • UP000069800 Componenti: Unassembled WGS sequence
  • UP000505220 Componenti: Unassembled WGS sequence

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Capsid proteinImported, Virion

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR014570, Encapsidation_CP3

PIRSF; a whole-protein classification database

More...PIRSFi		PIRSF032437, UCP032437, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q7BBY7-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKLLKTKNCL YYRNGDNKLS EYQLLTQFNP AFINKKIKMC EFQIESMYHM 
        60         70         80         90        100
SASTTTCDEI MGVVSVSYPI EKLVIKIIET KAGLQNYKNR SINNMALLKK 
       110        120        130        140        150
VLNHYTEKEQ KQVVKYMRSN GRYKPYNVIE RLQVDLYQAS IKQRSERQKQ 
       160        170 
RNTAIENSKI ARVNAYHQSS YVKVV
Length:175
Mass (Da):20,592
Last modified:July 5, 2004 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i4D5903EF2853346C
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AF410775 Genomic DNA Translation: AAL04129.1
EF010993 Genomic DNA Translation: ABJ97291.1
AB690438 Genomic DNA Translation: BAM28668.1
CAIIPV010000001 Genomic DNA Translation: CAC8849899.1
CAIIUP010000003 Genomic DNA Translation: CAC9262198.1
CAIIXB010000011 Genomic DNA Translation: CAC9476677.1
FGEC01000018 Genomic DNA Translation: CXO10298.1
WKGS01000011 Genomic DNA Translation: MRW45503.1
WPSZ01000030 Genomic DNA Translation: MVJ29290.1
CP033112 Genomic DNA Translation: QGQ75412.1
UAUY01000007 Genomic DNA Translation: SQA04893.1
UDNZ01000024 Genomic DNA Translation: SRF40569.1
UHBX01000004 Genomic DNA Translation: SUL25981.1
UHBY01000003 Genomic DNA Translation: SUL33549.1

NCBI Reference Sequences

More...RefSeqi		WP_000771368.1, NZ_WTUM01000027.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		AOO99318; AOO99318; FORC27_2080
CXO10298; CXO10298; ERS072840_02264
SCR11802; SCR11802; SAMEA2298760_00807

Pathosystems Resource Integration Center (PATRIC)

More...PATRICi		fig|1280.10341.peg.2078

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF410775 Genomic DNA Translation: AAL04129.1
EF010993 Genomic DNA Translation: ABJ97291.1
AB690438 Genomic DNA Translation: BAM28668.1
CAIIPV010000001 Genomic DNA Translation: CAC8849899.1
CAIIUP010000003 Genomic DNA Translation: CAC9262198.1
CAIIXB010000011 Genomic DNA Translation: CAC9476677.1
FGEC01000018 Genomic DNA Translation: CXO10298.1
WKGS01000011 Genomic DNA Translation: MRW45503.1
WPSZ01000030 Genomic DNA Translation: MVJ29290.1
CP033112 Genomic DNA Translation: QGQ75412.1
UAUY01000007 Genomic DNA Translation: SQA04893.1
UDNZ01000024 Genomic DNA Translation: SRF40569.1
UHBX01000004 Genomic DNA Translation: SUL25981.1
UHBY01000003 Genomic DNA Translation: SUL33549.1
RefSeqiWP_000771368.1, NZ_WTUM01000027.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Genome annotation databases

EnsemblBacteriaiAOO99318; AOO99318; FORC27_2080
CXO10298; CXO10298; ERS072840_02264
SCR11802; SCR11802; SAMEA2298760_00807
PATRICifig|1280.10341.peg.2078

Family and domain databases

InterProiView protein in InterPro
IPR014570, Encapsidation_CP3
PIRSFiPIRSF032437, UCP032437, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ7BBY7_STAAU
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q7BBY7
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: February 10, 2021
This is version 84 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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