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Entry version 103 (16 Oct 2019)
Sequence version 2 (15 Feb 2005)
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Protein

Protein MEI2-like 3

Gene

ML3

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Probable RNA-binding protein that may play a role in growth regulation.By similarity

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

  • RNA binding Source: GO_Central

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionRNA-binding

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Protein MEI2-like 3
Short name:
OML3
Alternative name(s):
MEI2-like protein 3
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:ML3
Ordered Locus Names:Os05g0102800, LOC_Os05g01240
ORF Names:OsJ_16784, P0036D10.18, P0668H12.3
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiOryza sativa subsp. japonica (Rice)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri39947 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000059680 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 5

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004093471 – 955Protein MEI2-like 3Add BLAST955

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q75M35

PRoteomics IDEntifications database

More...
PRIDEi
Q75M35

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q75M35 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q75M35 OS

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q75M35

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini270 – 343RRM 1PROSITE-ProRule annotationAdd BLAST74
Domaini355 – 428RRM 2PROSITE-ProRule annotationAdd BLAST74

Keywords - Domaini

Repeat

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG4660 Eukaryota
ENOG4111R9F LUCA

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q75M35

Identification of Orthologs from Complete Genome Data

More...
OMAi
CTKKFVE

Database of Orthologous Groups

More...
OrthoDBi
1464915at2759

Family and domain databases

Conserved Domains Database

More...
CDDi
cd12524 RRM1_MEI2_like, 1 hit
cd12531 RRM3_MEI2_like, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.30.70.330, 2 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR034453 MEI2-like_RRM1
IPR034454 MEI2-like_RRM3
IPR007201 Mei2-like_Rrm_C
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR000504 RRM_dom

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00076 RRM_1, 2 hits
PF04059 RRM_2, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00360 RRM, 3 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF54928 SSF54928, 2 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50102 RRM, 2 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

Q75M35-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MVIASGAIDR RHLSPFTPTS DDSSSSFFSQ DLVPTERQVG FWNSESMVDH
60 70 80 90 100
KGSKSVFASP LEKIQPNGAN HAGDPETPGG QAFKGLDILS LSNLMRQENA
110 120 130 140 150
SGSPSLSWGE ILTNPISRLG LSTRETAFVE PTTADQHVPG YGKGLSSSSL
160 170 180 190 200
SEVFSGKSRE IVSGVLCQST GTHTSIYDSD EPLESMEAIE AQTIGDLLPD
210 220 230 240 250
DDDDLISGIA DGFEFTGMST NQDDADEDIF CTGGGMELEN NDSVKGDKVQ
260 270 280 290 300
DGSFKSQISS GHSINKQPSR TLVVRNITAN IEDSDLTVLF QQYGDIRMLY
310 320 330 340 350
TSFKHHGFVT VSYYDIRAAQ NAMRALHSKP LGLMKLDVQF SFPKENVPGK
360 370 380 390 400
DIDKGMLVVS NIDSSISNDD LLQMLSVYGD VKEISSSPIS CTKKFVEFYD
410 420 430 440 450
VRAAEEALHD LNKGGISGPK FKVELSQHGE AGSCLRQQHS REWKQDSLPH
460 470 480 490 500
QPKNSSPGTI GKLGTKCQDN STVHNLFSPV NQQLESPTQC ISTTGPQILS
510 520 530 540 550
SPIRIKSTLQ HNNQASVGDL SGPLGQGNFG RGIQTLHPRS LPEHHNRICN
560 570 580 590 600
NSKSMTVSGR NASSRQDGVD HNIQKVGPAG FCGHSFDQNN EAFGFTEIGS
610 620 630 640 650
CPLHGYHYTW NHTNVFPQSP SAPILWSNLQ HPMHVHSYPG VPPHMLNTGS
660 670 680 690 700
YPMDQHHLGS APDNGGSFGN VHSFHPGSLG SIGLHGSPQL YPSELSAFAS
710 720 730 740 750
SRGNFREALF SPVGGGFQSL QQMCNAINGR NPMIHVSTSY DATNDRMRSR
760 770 780 790 800
RHDGNPAQSE NKRQFELDID RIAKGEDSRT TLMIKNIPNK YNCKLLLAVI
810 820 830 840 850
DENHRGTYDF IYLPIDFKNK CNVGYAFINM TDPQHIIPFY KTFNGKKWEK
860 870 880 890 900
FNSEKVASLA YARIQGRSAL IAHFQNSSLM NEDKWCRPML FHKDGPNAGD
910 920 930 940 950
QEPFPVGNNV RSRAGRNRSL ISLDTKDASP SSSPDQESNS VGTANSTCRT

TLEQT
Length:955
Mass (Da):104,522
Last modified:February 15, 2005 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i107E786A60F8A7B2
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A0N7KK01A0A0N7KK01_ORYSJ
Os05g0102800 protein
Os05g0102800, OSNPB_050102800
716Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AB244278 mRNA Translation: BAE79765.1
AC073405 Genomic DNA Translation: AAW56930.1
AC084818 Genomic DNA Translation: AAS88822.2
AP008211 Genomic DNA Translation: BAF16302.1
AP014961 Genomic DNA Translation: BAS91840.1
CM000142 Genomic DNA Translation: EEE62003.1
AK120322 mRNA Translation: BAG99966.1
AK121634 mRNA Translation: BAH00583.1

NCBI Reference Sequences

More...
RefSeqi
XP_015640244.1, XM_015784758.1
XP_015640245.1, XM_015784759.1
XP_015640246.1, XM_015784760.1

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
Os05t0102800-01; Os05t0102800-01; Os05g0102800
Os05t0102800-02; Os05t0102800-02; Os05g0102800
Os05t0102800-03; Os05t0102800-03; Os05g0102800

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
4337535

Gramene; a comparative resource for plants

More...
Gramenei
Os05t0102800-01; Os05t0102800-01; Os05g0102800
Os05t0102800-02; Os05t0102800-02; Os05g0102800
Os05t0102800-03; Os05t0102800-03; Os05g0102800

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
osa:4337535

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB244278 mRNA Translation: BAE79765.1
AC073405 Genomic DNA Translation: AAW56930.1
AC084818 Genomic DNA Translation: AAS88822.2
AP008211 Genomic DNA Translation: BAF16302.1
AP014961 Genomic DNA Translation: BAS91840.1
CM000142 Genomic DNA Translation: EEE62003.1
AK120322 mRNA Translation: BAG99966.1
AK121634 mRNA Translation: BAH00583.1
RefSeqiXP_015640244.1, XM_015784758.1
XP_015640245.1, XM_015784759.1
XP_015640246.1, XM_015784760.1

3D structure databases

SMRiQ75M35
ModBaseiSearch...

Proteomic databases

PaxDbiQ75M35
PRIDEiQ75M35

Genome annotation databases

EnsemblPlantsiOs05t0102800-01; Os05t0102800-01; Os05g0102800
Os05t0102800-02; Os05t0102800-02; Os05g0102800
Os05t0102800-03; Os05t0102800-03; Os05g0102800
GeneIDi4337535
GrameneiOs05t0102800-01; Os05t0102800-01; Os05g0102800
Os05t0102800-02; Os05t0102800-02; Os05g0102800
Os05t0102800-03; Os05t0102800-03; Os05g0102800
KEGGiosa:4337535

Phylogenomic databases

eggNOGiKOG4660 Eukaryota
ENOG4111R9F LUCA
InParanoidiQ75M35
OMAiCTKKFVE
OrthoDBi1464915at2759

Gene expression databases

ExpressionAtlasiQ75M35 baseline and differential
GenevisibleiQ75M35 OS

Family and domain databases

CDDicd12524 RRM1_MEI2_like, 1 hit
cd12531 RRM3_MEI2_like, 1 hit
Gene3Di3.30.70.330, 2 hits
InterProiView protein in InterPro
IPR034453 MEI2-like_RRM1
IPR034454 MEI2-like_RRM3
IPR007201 Mei2-like_Rrm_C
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR000504 RRM_dom
PfamiView protein in Pfam
PF00076 RRM_1, 2 hits
PF04059 RRM_2, 1 hit
SMARTiView protein in SMART
SM00360 RRM, 3 hits
SUPFAMiSSF54928 SSF54928, 2 hits
PROSITEiView protein in PROSITE
PS50102 RRM, 2 hits

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiOML3_ORYSJ
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q75M35
Secondary accession number(s): A0A0P0WGV2
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 31, 2011
Last sequence update: February 15, 2005
Last modified: October 16, 2019
This is version 103 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
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