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Protein
Submitted name:

Ladybird homeobox 1a

Gene

lbx1a

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi125 – 184HomeoboxPROSITE-ProRule annotationAdd BLAST60

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Ladybird homeobox 1aImported
Submitted name:
Novel protein similar to zebrafish lady bird-like homeobox 1 Drosophila homolog (Lbx1h)Imported
Gene namesi
Name:lbx1aImported
Synonyms:si:busm1-265n4.1Imported, si:ch211-103o12.1Imported
ORF Names:dZ265N4.1-001Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 13

Organism-specific databases

ZFINiZDB-GENE-040724-40 lbx1a

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

Expressioni

Gene expression databases

BgeeiENSDARG00000018321

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000045350

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini123 – 183HomeoboxInterPro annotationAdd BLAST61

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili170 – 197Sequence analysisAdd BLAST28

Keywords - Domaini

Coiled coilSequence analysis, HomeoboxPROSITE-ProRule annotationSAAS annotationImported

Phylogenomic databases

eggNOGiKOG0488 Eukaryota
ENOG411188D LUCA
GeneTreeiENSGT00910000143996
HOGENOMiHOG000007247
HOVERGENiHBG006244
KOiK09353
OMAiHTTSKEC
OrthoDBiEOG091G09CY
TreeFamiTF325047

Family and domain databases

CDDicd00086 homeodomain, 1 hit
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR017970 Homeobox_CS
IPR001356 Homeobox_dom
IPR000047 HTH_motif
PfamiView protein in Pfam
PF00046 Homeobox, 1 hit
PRINTSiPR00031 HTHREPRESSR
SMARTiView protein in SMART
SM00389 HOX, 1 hit
SUPFAMiSSF46689 SSF46689, 1 hit
PROSITEiView protein in PROSITE
PS00027 HOMEOBOX_1, 1 hit
PS50071 HOMEOBOX_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q6ZM39-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTSKEDAKGA SVEDRRRSPL DHLPPPANSN KPLTPFSIED ILNKPSVKRS
60 70 80 90 100
YTICGTAHLL SSGEKHPSTG HPLSNRALLT QTSPLCALEE LASKTFKGLE
110 120 130 140 150
VSVLQAAEGR DGMTLFGQRN TPKKRRKSRT AFTNHQIYEL EKRFLYQKYL
160 170 180 190 200
SPADRDQIAQ QLGLTNAQVI TWFQNRRAKL KRDLEEMKAD VESAKAVGNV
210 220 230 240 250
PFEKMAKLAD LEKRVNGTLG DSSAVSPSRS NHEHEGTNKL HMSPSSPYTD
260
HTTSKECSED EDEEIDVDD
Length:269
Mass (Da):29,987
Last modified:July 5, 2004 - v1
Checksum:iC82FF8373DD6BF82
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX950184 Genomic DNA No translation available.
AL928816 Genomic DNA Translation: CAE50908.1
RefSeqiNP_001020703.1, NM_001025532.1
UniGeneiDr.135691

Genome annotation databases

EnsembliENSDART00000045351; ENSDARP00000045350; ENSDARG00000018321
GeneIDi564103
KEGGidre:564103

Similar proteinsi

Entry informationi

Entry nameiQ6ZM39_DANRE
AccessioniPrimary (citable) accession number: Q6ZM39
Entry historyiIntegrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: March 28, 2018
This is version 126 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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