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Entry version 101 (29 Sep 2021)
Sequence version 1 (05 Jul 2004)
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Protein

Beta-galactosidase 11

Gene

Os08g0549200

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

  • Hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides. EC:3.2.1.23

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section is used for enzymes and indicates the residues directly involved in catalysis.<p><a href='/help/act_site' target='_top'>More...</a></p>Active sitei189Proton donorSequence analysis1
Active sitei260NucleophileSequence analysis1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionGlycosidase, Hydrolase

Protein family/group databases

Carbohydrate-Active enZymes

More...
CAZyi
GH35, Glycoside Hydrolase Family 35

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Beta-galactosidase 11 (EC:3.2.1.23)
Alternative name(s):
Lactase 115
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:Os08g0549200, LOC_Os08g43570
ORF Names:OJ1479_B11.10
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiOryza sativa subsp. japonica (Rice)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri39947 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000059680 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 8
  • UP000000763 Componenti: Chromosome 8

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Keywords - Cellular componenti

Apoplast, Secreted

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 23Sequence analysisAdd BLAST23
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_000029416324 – 848Beta-galactosidase 11Add BLAST825

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm_processing_section">PTM / Processing</a> section specifies the position and type of each covalently attached glycan group (mono-, di-, or polysaccharide).<p><a href='/help/carbohyd' target='_top'>More...</a></p>Glycosylationi29N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi261N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi472N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi783N-linked (GlcNAc...) asparagineSequence analysis1

Keywords - PTMi

Glycoprotein

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q6ZJJ0

PRoteomics IDEntifications database

More...
PRIDEi
Q6ZJJ0

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q6ZJJ0, baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q6ZJJ0, OS

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
4530.OS08T0549200-01

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q6ZJJ0

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini750 – 837SUEL-type lectinPROSITE-ProRule annotationAdd BLAST88

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the glycosyl hydrolase 35 family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG0496, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_007853_4_1_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q6ZJJ0

Identification of Orthologs from Complete Genome Data

More...
OMAi
FEYHIPR

Database of Orthologous Groups

More...
OrthoDBi
179316at2759

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.60.120.740, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR008979, Galactose-bd-like_sf
IPR041392, GHD
IPR031330, Gly_Hdrlase_35_cat
IPR019801, Glyco_hydro_35_CS
IPR001944, Glycoside_Hdrlase_35
IPR017853, Glycoside_hydrolase_SF
IPR000922, Lectin_gal-bd_dom
IPR043159, Lectin_gal-bd_sf

The PANTHER Classification System

More...
PANTHERi
PTHR23421, PTHR23421, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF02140, Gal_Lectin, 1 hit
PF17834, GHD, 1 hit
PF01301, Glyco_hydro_35, 1 hit

Protein Motif fingerprint database; a protein domain database

More...
PRINTSi
PR00742, GLHYDRLASE35

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF49785, SSF49785, 2 hits
SSF51445, SSF51445, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS01182, GLYCOSYL_HYDROL_F35, 1 hit
PS50228, SUEL_LECTIN, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

Q6ZJJ0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSAAAVLAVV AAAVAALAAA ASGYELTKNG TVITYDRRSL IIDGHREIFF
60 70 80 90 100
SGSIHYPRSP PDTWPDLISK AKEGGLNVIE SYVFWNGHEP EQGVYNFEGR
110 120 130 140 150
YDLIKFFKLI QEKEMYAIVR IGPFVQAEWN HGGLPYWLRE IPDIIFRTNN
160 170 180 190 200
EPFKKYMKQF VTLIVNKLKE AKLFASQGGP IILAQIENEY QHLEVAFKEA
210 220 230 240 250
GTKYINWAAK MAIATNTGVP WIMCKQTKAP GEVIPTCNGR HCGDTWPGPA
260 270 280 290 300
DKKKPLLWTE NWTAQYRVFG DPPSQRSAED IAFSVARFFS VGGTMANYYM
310 320 330 340 350
YHGGTNFGRN GAAFVMPRYY DEAPLDEFGL YKEPKWGHLR DLHHALRHCK
360 370 380 390 400
KALLWGNPSV QPLGKLYEAR VFEMKEKNVC VAFLSNHNTK EDGTVTFRGQ
410 420 430 440 450
KYFVARRSIS ILADCKTVVF STQHVNSQHN QRTFHFADQT VQDNVWEMYS
460 470 480 490 500
EEKIPRYSKT SIRTQRPLEQ YNQTKDKTDY LWYTTSFRLE TDDLPYRKEV
510 520 530 540 550
KPVLEVSSHG HAIVAFVNDA FVGCGHGTKI NKAFTMEKAM DLKVGVNHVA
560 570 580 590 600
ILSSTLGLMD SGSYLEHRMA GVYTVTIRGL NTGTLDLTTN GWGHVVGLDG
610 620 630 640 650
ERRRVHSEQG MGAVAWKPGK DNQPLTWYRR RFDPPSGTDP VVIDLTPMGK
660 670 680 690 700
GFLFVNGEGL GRYWVSYHHA LGKPSQYLYH VPRSLLRPKG NTLMFFEEEG
710 720 730 740 750
GKPDAIMILT VKRDNICTFM TEKNPAHVRW SWESKDSQPK AVAGAGAGAG
760 770 780 790 800
GLKPTAVLSC PTKKTIQSVV FASYGNPLGI CGNYTVGSCH APRTKEVVEK
810 820 830 840
ACIGRKTCSL VVSSEVYGGD VHCPGTTGTL AVQAKCSKRP PRSAATAQ
Length:848
Mass (Da):94,739
Last modified:July 5, 2004 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i81C585356683BA05
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A0P0XIY1A0A0P0XIY1_ORYSJ
Beta-galactosidase
Os08g0549200, OSNPB_080549200
660Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti560D → N in AK069066 (PubMed:12869764).Curated1
Sequence conflicti571G → R in AK069066 (PubMed:12869764).Curated1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AP003912 Genomic DNA Translation: BAD08952.1
AP008214 Genomic DNA Translation: BAF24354.1
AP014964 Genomic DNA Translation: BAT06573.1
AK069066 mRNA No translation available.

NCBI Reference Sequences

More...
RefSeqi
XP_015650676.1, XM_015795190.1

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
Os08t0549200-01; Os08t0549200-01; Os08g0549200

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
4346248

Gramene; a comparative resource for plants

More...
Gramenei
Os08t0549200-01; Os08t0549200-01; Os08g0549200

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
osa:4346248

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP003912 Genomic DNA Translation: BAD08952.1
AP008214 Genomic DNA Translation: BAF24354.1
AP014964 Genomic DNA Translation: BAT06573.1
AK069066 mRNA No translation available.
RefSeqiXP_015650676.1, XM_015795190.1

3D structure databases

SMRiQ6ZJJ0
ModBaseiSearch...

Protein-protein interaction databases

STRINGi4530.OS08T0549200-01

Protein family/group databases

CAZyiGH35, Glycoside Hydrolase Family 35

Proteomic databases

PaxDbiQ6ZJJ0
PRIDEiQ6ZJJ0

Genome annotation databases

EnsemblPlantsiOs08t0549200-01; Os08t0549200-01; Os08g0549200
GeneIDi4346248
GrameneiOs08t0549200-01; Os08t0549200-01; Os08g0549200
KEGGiosa:4346248

Phylogenomic databases

eggNOGiKOG0496, Eukaryota
HOGENOMiCLU_007853_4_1_1
InParanoidiQ6ZJJ0
OMAiFEYHIPR
OrthoDBi179316at2759

Gene expression databases

ExpressionAtlasiQ6ZJJ0, baseline and differential
GenevisibleiQ6ZJJ0, OS

Family and domain databases

Gene3Di2.60.120.740, 1 hit
InterProiView protein in InterPro
IPR008979, Galactose-bd-like_sf
IPR041392, GHD
IPR031330, Gly_Hdrlase_35_cat
IPR019801, Glyco_hydro_35_CS
IPR001944, Glycoside_Hdrlase_35
IPR017853, Glycoside_hydrolase_SF
IPR000922, Lectin_gal-bd_dom
IPR043159, Lectin_gal-bd_sf
PANTHERiPTHR23421, PTHR23421, 1 hit
PfamiView protein in Pfam
PF02140, Gal_Lectin, 1 hit
PF17834, GHD, 1 hit
PF01301, Glyco_hydro_35, 1 hit
PRINTSiPR00742, GLHYDRLASE35
SUPFAMiSSF49785, SSF49785, 2 hits
SSF51445, SSF51445, 1 hit
PROSITEiView protein in PROSITE
PS01182, GLYCOSYL_HYDROL_F35, 1 hit
PS50228, SUEL_LECTIN, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiBGA11_ORYSJ
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q6ZJJ0
Secondary accession number(s): A0A0P0XI61
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 10, 2007
Last sequence update: July 5, 2004
Last modified: September 29, 2021
This is version 101 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  3. SIMILARITY comments
    Index of protein domains and families
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