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Protein

Transcription factor PCF2

Gene

PCF2

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter.2 Publications

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionActivator, Developmental protein, DNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Transcription factor PCF2
Gene namesi
Name:PCF2
Ordered Locus Names:Os08g0544800, LOC_Os08g43160
ORF Names:OsJ_027020, P0623F08.31
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
Proteomesi
  • UP000059680 Componenti: Chromosome 8

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003308041 – 373Transcription factor PCF2Add BLAST373

Proteomic databases

PaxDbiQ6ZBH6

Expressioni

Tissue specificityi

Expressed in seedlings and leaves, mostly in the lower region rich in dividing cells.1 Publication

Gene expression databases

ExpressionAtlasiQ6ZBH6 differential
GenevisibleiQ6ZBH6 OS

Interactioni

Subunit structurei

Forms homodimers and heterodimers with PCF1.

Protein-protein interaction databases

STRINGi39947.LOC_Os08g43160.1

Structurei

3D structure databases

SMRiQ6ZBH6
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini75 – 129TCPPROSITE-ProRule annotationAdd BLAST55

Phylogenomic databases

eggNOGiENOG410IE9F Eukaryota
ENOG410YJS2 LUCA
HOGENOMiHOG000243250
InParanoidiQ6ZBH6
OMAiSNSGEHP
OrthoDBiEOG09360HZ1

Family and domain databases

InterProiView protein in InterPro
IPR017887 TF_TCP_subgr
IPR005333 Transcription_factor_TCP
PfamiView protein in Pfam
PF03634 TCP, 1 hit
PROSITEiView protein in PROSITE
PS51369 TCP, 1 hit

Sequencei

Sequence statusi: Complete.

Q6ZBH6-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEAQAQDKAE EGEEEGTRQQ HAQAGPVGAA GGGGGGGAAA VAMSAIPMNS
60 70 80 90 100
WLVPKPEPVE FFGGMAMVRK PPPRNRDRHT KVEGRGRRIR MPAACAARIF
110 120 130 140 150
QLTRELGHKS DGETIRWLLQ QSEPAIIAAT GTGTVPAIAT TVDGVLRIPT
160 170 180 190 200
QSSSSSGPAS SAVVDGEESS AKRRRKLQPT RAVAGASPLA TAAPAAYYPV
210 220 230 240 250
IADPLLQGSG GAAISVPSGL APITATGAPQ GLVPVFAVPA TGSPAVAGGN
260 270 280 290 300
RMIPQATAVW MVPQPAGAAG AGNQPTQFWA IQSAPQLVNF AGAQFPTAIN
310 320 330 340 350
VADFQQQQQQ QPVSTTIVQN SNSGEHMHFS GADSHEQQRR GRKEGNSGGV
360 370
VDHPEEDEDD DDDEPVSDSS PEE
Length:373
Mass (Da):38,501
Last modified:July 5, 2004 - v1
Checksum:i8A71BFE320AC7B12
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti264Q → R in BAA23143 (PubMed:9338963).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D87261 mRNA Translation: BAA23143.1
AP004632 Genomic DNA Translation: BAD09732.1
AP008214 Genomic DNA Translation: BAF24323.1
AP014964 Genomic DNA Translation: BAT06528.1
CM000145 Genomic DNA Translation: EAZ43537.1
AK060536 mRNA Translation: BAG87484.1
AK119660 mRNA Translation: BAG99734.1
PIRiT02976
RefSeqiXP_015648330.1, XM_015792844.1
UniGeneiOs.57358

Genome annotation databases

EnsemblPlantsiOs08t0544800-01; Os08t0544800-01; Os08g0544800
GeneIDi4346214
GrameneiOs08t0544800-01; Os08t0544800-01; Os08g0544800
KEGGiosa:4346214

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D87261 mRNA Translation: BAA23143.1
AP004632 Genomic DNA Translation: BAD09732.1
AP008214 Genomic DNA Translation: BAF24323.1
AP014964 Genomic DNA Translation: BAT06528.1
CM000145 Genomic DNA Translation: EAZ43537.1
AK060536 mRNA Translation: BAG87484.1
AK119660 mRNA Translation: BAG99734.1
PIRiT02976
RefSeqiXP_015648330.1, XM_015792844.1
UniGeneiOs.57358

3D structure databases

SMRiQ6ZBH6
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os08g43160.1

Proteomic databases

PaxDbiQ6ZBH6

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOs08t0544800-01; Os08t0544800-01; Os08g0544800
GeneIDi4346214
GrameneiOs08t0544800-01; Os08t0544800-01; Os08g0544800
KEGGiosa:4346214

Phylogenomic databases

eggNOGiENOG410IE9F Eukaryota
ENOG410YJS2 LUCA
HOGENOMiHOG000243250
InParanoidiQ6ZBH6
OMAiSNSGEHP
OrthoDBiEOG09360HZ1

Gene expression databases

ExpressionAtlasiQ6ZBH6 differential
GenevisibleiQ6ZBH6 OS

Family and domain databases

InterProiView protein in InterPro
IPR017887 TF_TCP_subgr
IPR005333 Transcription_factor_TCP
PfamiView protein in Pfam
PF03634 TCP, 1 hit
PROSITEiView protein in PROSITE
PS51369 TCP, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiPCF2_ORYSJ
AccessioniPrimary (citable) accession number: Q6ZBH6
Secondary accession number(s): B7E537, O23876
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 29, 2008
Last sequence update: July 5, 2004
Last modified: October 10, 2018
This is version 76 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
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