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UniProtKB - Q6Z4K6 (RH52B_ORYSJ)
Protein
DEAD-box ATP-dependent RNA helicase 52B
Gene
PL10B
Organism
Oryza sativa subsp. japonica (Rice)
Status
Functioni
Catalytic activityi
- EC:3.6.4.13
Regions
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Nucleotide bindingi | 213 – 220 | ATPPROSITE-ProRule annotation | 8 |
GO - Molecular functioni
- ATP binding Source: UniProtKB-KW
- ATP hydrolysis activity Source: RHEA
- RNA binding Source: GO_Central
- RNA helicase activity Source: GO_Central
Keywordsi
Molecular function | Helicase, Hydrolase, RNA-binding |
Ligand | ATP-binding, Nucleotide-binding |
Names & Taxonomyi
Protein namesi | |
Gene namesi | Name:PL10B Ordered Locus Names:Os07g0202100, LOC_Os07g10250 ORF Names:OsJ_23477Imported, OSJNBa0081K20.14 |
Organismi | Oryza sativa subsp. japonica (Rice) |
Taxonomic identifieri | 39947 [NCBI] |
Taxonomic lineagei | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › Liliopsida › Poales › Poaceae › BOP clade › Oryzoideae › Oryzeae › Oryzinae › Oryza › Oryza sativa |
Proteomesi |
|
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000282451 | 1 – 638 | DEAD-box ATP-dependent RNA helicase 52BAdd BLAST | 638 |
Proteomic databases
PaxDbi | Q6Z4K6 |
Expressioni
Gene expression databases
ExpressionAtlasi | Q6Z4K6, baseline and differential |
Genevisiblei | Q6Z4K6, OS |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 200 – 384 | Helicase ATP-bindingPROSITE-ProRule annotationAdd BLAST | 185 | |
Domaini | 411 – 562 | Helicase C-terminalPROSITE-ProRule annotationAdd BLAST | 152 |
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 1 – 129 | DisorderedSequence analysisAdd BLAST | 129 | |
Regioni | 565 – 638 | DisorderedSequence analysisAdd BLAST | 74 |
Motif
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Motifi | 169 – 197 | Q motifAdd BLAST | 29 | |
Motifi | 328 – 331 | DEAD box | 4 |
Domaini
The Q motif is unique to and characteristic of the DEAD box family of RNA helicases and controls ATP binding and hydrolysis.
Sequence similaritiesi
Phylogenomic databases
eggNOGi | KOG0335, Eukaryota |
InParanoidi | Q6Z4K6 |
OMAi | NHGNSRL |
OrthoDBi | 595675at2759 |
Family and domain databases
CDDi | cd17967, DEADc_DDX3_DDX4, 1 hit |
Gene3Di | 3.40.50.300, 2 hits |
InterProi | View protein in InterPro IPR011545, DEAD/DEAH_box_helicase_dom IPR044763, Ded1/Dbp1_DEADc IPR014001, Helicase_ATP-bd IPR001650, Helicase_C IPR027417, P-loop_NTPase IPR014014, RNA_helicase_DEAD_Q_motif |
Pfami | View protein in Pfam PF00270, DEAD, 1 hit PF00271, Helicase_C, 1 hit |
SMARTi | View protein in SMART SM00487, DEXDc, 1 hit SM00490, HELICc, 1 hit |
SUPFAMi | SSF52540, SSF52540, 1 hit |
PROSITEi | View protein in PROSITE PS51192, HELICASE_ATP_BIND_1, 1 hit PS51194, HELICASE_CTER, 1 hit PS51195, Q_MOTIF, 1 hit |
(1+)i Sequence
Sequence statusi: Complete.
This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All
Q6Z4K6-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MRSSWADSAA NAEESAPAAA ANHGNSRLPR SSYVPPHLRG QAAPAAPAQA
60 70 80 90 100
GALPSAAAAA QPSVGQPGVV GGPRWAGIVN GGGGGGGGSV GGSRQGFGAG
110 120 130 140 150
GRGGGGGGGG GAWNSRPGGW DRRDREPDPF ANSEAAEVDF EGENTGINFE
160 170 180 190 200
AYEDIPVETS GHDVPPPANT FAEIDLGDAL NENIRRCKYV KPTPVQRYAI
210 220 230 240 250
PISIAGRDLM ACAQTGSGKT AAFCFPIISG IMRSRPPPRS RGSRTAYPLA
260 270 280 290 300
LILSPTRELS VQIHEEARKF AYQTGVKVVV AYGGAPITQQ LRELERGVEI
310 320 330 340 350
LVATPGRLMD LLERARVSLQ MIKYLALDEA DRMLDMGFEP QIRKIVEQMD
360 370 380 390 400
MPPRGERQTM LFSATFPKEI QRMASDFLAD YIFLAVGRVG SSTDLIVQRV
410 420 430 440 450
EFVLDADKRS YLMDLLHAQR ANGTHGKQAL TLVFVETKRG ADALENWLYN
460 470 480 490 500
NGFPATSIHG DRTQQEREYA LRSFKSGATP ILVATDVAAR GLDIPHVAHV
510 520 530 540 550
INFDLPNDID DYVHRIGRTG RAGKSGLATA FFNESNTPLA RPLSELMQEA
560 570 580 590 600
NQEVPQWLER YAARSSFGGG GGRNRRSGGG ARFGGRDFRR DRGSGGGGYG
610 620 630
GGGGGYGGGG YGGGGGGGGY GGGSSYGGGG QGFSSAWD
Computationally mapped potential isoform sequencesi
There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basketA0A0P0X3B5 | A0A0P0X3B5_ORYSJ | Os07g0202100 protein | Os07g0202100, OSNPB_070202100 | 275 | Annotation score: |
Experimental Info
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Sequence conflicti | 231 | I → F in AK101736 (PubMed:12869764).Curated | 1 |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AP005171 Genomic DNA Translation: BAC83834.1 AP008213 Genomic DNA Translation: BAF21049.1 AP014963 Genomic DNA Translation: BAT00508.1 CM000144 Genomic DNA Translation: EEE66762.1 AK101736 mRNA No translation available. AB042644 mRNA Translation: BAA95705.1 |
RefSeqi | XP_015646994.1, XM_015791508.1 |
Genome annotation databases
EnsemblPlantsi | Os07t0202100-01; Os07t0202100-01; Os07g0202100 |
GeneIDi | 4342669 |
Gramenei | Os07t0202100-01; Os07t0202100-01; Os07g0202100 |
KEGGi | osa:4342669 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AP005171 Genomic DNA Translation: BAC83834.1 AP008213 Genomic DNA Translation: BAF21049.1 AP014963 Genomic DNA Translation: BAT00508.1 CM000144 Genomic DNA Translation: EEE66762.1 AK101736 mRNA No translation available. AB042644 mRNA Translation: BAA95705.1 |
RefSeqi | XP_015646994.1, XM_015791508.1 |
3D structure databases
SMRi | Q6Z4K6 |
ModBasei | Search... |
Protein-protein interaction databases
STRINGi | 4530.OS07T0202100-01 |
Proteomic databases
PaxDbi | Q6Z4K6 |
Genome annotation databases
EnsemblPlantsi | Os07t0202100-01; Os07t0202100-01; Os07g0202100 |
GeneIDi | 4342669 |
Gramenei | Os07t0202100-01; Os07t0202100-01; Os07g0202100 |
KEGGi | osa:4342669 |
Phylogenomic databases
eggNOGi | KOG0335, Eukaryota |
InParanoidi | Q6Z4K6 |
OMAi | NHGNSRL |
OrthoDBi | 595675at2759 |
Gene expression databases
ExpressionAtlasi | Q6Z4K6, baseline and differential |
Genevisiblei | Q6Z4K6, OS |
Family and domain databases
CDDi | cd17967, DEADc_DDX3_DDX4, 1 hit |
Gene3Di | 3.40.50.300, 2 hits |
InterProi | View protein in InterPro IPR011545, DEAD/DEAH_box_helicase_dom IPR044763, Ded1/Dbp1_DEADc IPR014001, Helicase_ATP-bd IPR001650, Helicase_C IPR027417, P-loop_NTPase IPR014014, RNA_helicase_DEAD_Q_motif |
Pfami | View protein in Pfam PF00270, DEAD, 1 hit PF00271, Helicase_C, 1 hit |
SMARTi | View protein in SMART SM00487, DEXDc, 1 hit SM00490, HELICc, 1 hit |
SUPFAMi | SSF52540, SSF52540, 1 hit |
PROSITEi | View protein in PROSITE PS51192, HELICASE_ATP_BIND_1, 1 hit PS51194, HELICASE_CTER, 1 hit PS51195, Q_MOTIF, 1 hit |
MobiDBi | Search... |
Entry informationi
Entry namei | RH52B_ORYSJ | |
Accessioni | Q6Z4K6Primary (citable) accession number: Q6Z4K6 Secondary accession number(s): B9FW25, Q9MAW8 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | April 3, 2007 |
Last sequence update: | July 5, 2004 | |
Last modified: | February 23, 2022 | |
This is version 112 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Plant Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
Reference proteomeDocuments
- Oryza sativa (rice)
Index of Oryza sativa entries and their corresponding gene designations - SIMILARITY comments
Index of protein domains and families