Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic

Gene

Os08g0360100

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Required for the splicing of group IIA introns in chloroplasts, by regulating the intron folding. Forms splicing particles with RNA. Also involved in chloroplast protein translation (By similarity).By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, RNA-binding
Biological processmRNA processing, mRNA splicing, Translation regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic
Alternative name(s):
Chloroplastic RNA splicing factor 1
Protein CHLOROPLAST RNA SPLICING 1
Gene namesi
Ordered Locus Names:Os08g0360100, LOC_Os08g27150
ORF Names:OJ1014_E02.14
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
Proteomesi
  • UP000059680 Componenti: Chromosome 8

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 71ChloroplastSequence analysisAdd BLAST71
ChainiPRO_000028362672 – 725Chloroplastic group IIA intron splicing facilitator CRS1, chloroplasticAdd BLAST654

Proteomic databases

PaxDbiQ6YYA3
PRIDEiQ6YYA3

Expressioni

Gene expression databases

ExpressionAtlasiQ6YYA3 differential
GenevisibleiQ6YYA3 OS

Interactioni

Subunit structurei

Homodimer. Interacts with RNA. Part of large ribonucleo-protein complexes that include group IIA introns and CRS1 (By similarity).By similarity

Protein-protein interaction databases

STRINGi39947.LOC_Os08g27150.1

Structurei

3D structure databases

ProteinModelPortaliQ6YYA3
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini153 – 250CRM 1PROSITE-ProRule annotationAdd BLAST98
Domaini352 – 449CRM 2PROSITE-ProRule annotationAdd BLAST98
Domaini564 – 664CRM 3PROSITE-ProRule annotationAdd BLAST101

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili451 – 473Sequence analysisAdd BLAST23
Coiled coili508 – 545Sequence analysisAdd BLAST38
Coiled coili691 – 721Sequence analysisAdd BLAST31

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi3 – 49Pro-richAdd BLAST47

Keywords - Domaini

Coiled coil, Repeat, Transit peptide

Phylogenomic databases

eggNOGiENOG410IR2V Eukaryota
ENOG410YC4W LUCA
HOGENOMiHOG000241574
InParanoidiQ6YYA3
OMAiERWARAK
OrthoDBiEOG093602CN

Family and domain databases

Gene3Di3.30.110.60, 1 hit
InterProiView protein in InterPro
IPR001890 RNA-binding_CRM
IPR035920 YhbY_like_sf
PfamiView protein in Pfam
PF01985 CRS1_YhbY, 3 hits
SMARTiView protein in SMART
SM01103 CRS1_YhbY, 3 hits
SUPFAMiSSF75471 SSF75471, 3 hits
PROSITEiView protein in PROSITE
PS51295 CRM, 3 hits

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q6YYA3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAPPPLHLFS PHVPSTSVSP PDPATEAPPA PKQHRGPRPA PRNPGSAKPL
60 70 80 90 100
TAGVPGGRTR RAVLGIIRKV RSLELSDPRT PSPNGGGGSS SSSTATARVP
110 120 130 140 150
FHLPIHPPPP EREEEEEKKG IRRAVPWAAA RDEETKVVLR REKKTRVPTR
160 170 180 190 200
AETELEAGEL ERLRRAARGK ERWARAKKAG ITDEVVEEVR GQWAKGQELA
210 220 230 240 250
GVRIVEPLRR CMDRAREILE IKTGGLVVWT RGGIHFVYRG SSYLENAKRH
260 270 280 290 300
RDFVNYNEEL SPVTSNNPTS QGKYWSKDET LTNDNDEADD KDDKPIKGTL
310 320 330 340 350
YEREVNRLLD SLGPRFIDWW WNTPLPVDAD LLPEVVPDFK TPFRQCPPGV
360 370 380 390 400
RPALADEELT YLRKHARPLP THFVLGRNTK LQGLAAAILK LWEKSLIAKV
410 420 430 440 450
AVKVGIQNTN HEQMARNLKR LTGGTVILRN KDYIIIYRGK DFLPGGVAES
460 470 480 490 500
VIERESQVHD QQAKEEEARL KMADSLQMIV GLSSERSYVG TFREYQDFHD
510 520 530 540 550
SHARRTTENN FRIQLEAKKH RLEKELKDQE WRLSMLTKKI ERSNQVLAKL
560 570 580 590 600
HSSWSPSKKD GDRELLTEEE RRIFRKIGLK MDEHVLLGRR GVFEGVIEEI
610 620 630 640 650
HQHWKHKEVV KVITKQNQAS QITYTSMMLE VETGGTLIAI ERFTTSHAII
660 670 680 690 700
LYRGKNYRRP TKSAPSNLLT KREALQRSIE VQRRGSMKYF AQERKKSIDE
710 720
LKRELRNVTW EIRKLNHDTE QSWTA
Length:725
Mass (Da):82,861
Last modified:July 5, 2004 - v1
Checksum:iDF1045556F4AA6EC
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti279E → V in AK066365 (PubMed:12869764).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP005628 Genomic DNA Translation: BAD03815.1
AP008214 Genomic DNA Translation: BAF23549.1
AP014964 Genomic DNA Translation: BAT05104.1
AK066365 mRNA No translation available.
UniGeneiOs.49450

Genome annotation databases

EnsemblPlantsiOs08t0360100-01; Os08t0360100-01; Os08g0360100
GrameneiOs08t0360100-01; Os08t0360100-01; Os08g0360100

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP005628 Genomic DNA Translation: BAD03815.1
AP008214 Genomic DNA Translation: BAF23549.1
AP014964 Genomic DNA Translation: BAT05104.1
AK066365 mRNA No translation available.
UniGeneiOs.49450

3D structure databases

ProteinModelPortaliQ6YYA3
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os08g27150.1

Proteomic databases

PaxDbiQ6YYA3
PRIDEiQ6YYA3

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOs08t0360100-01; Os08t0360100-01; Os08g0360100
GrameneiOs08t0360100-01; Os08t0360100-01; Os08g0360100

Phylogenomic databases

eggNOGiENOG410IR2V Eukaryota
ENOG410YC4W LUCA
HOGENOMiHOG000241574
InParanoidiQ6YYA3
OMAiERWARAK
OrthoDBiEOG093602CN

Gene expression databases

ExpressionAtlasiQ6YYA3 differential
GenevisibleiQ6YYA3 OS

Family and domain databases

Gene3Di3.30.110.60, 1 hit
InterProiView protein in InterPro
IPR001890 RNA-binding_CRM
IPR035920 YhbY_like_sf
PfamiView protein in Pfam
PF01985 CRS1_YhbY, 3 hits
SMARTiView protein in SMART
SM01103 CRS1_YhbY, 3 hits
SUPFAMiSSF75471 SSF75471, 3 hits
PROSITEiView protein in PROSITE
PS51295 CRM, 3 hits
ProtoNetiSearch...

Entry informationi

Entry nameiCRS1_ORYSJ
AccessioniPrimary (citable) accession number: Q6YYA3
Secondary accession number(s): A0A0P0XFH0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 3, 2007
Last sequence update: July 5, 2004
Last modified: November 7, 2018
This is version 75 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again