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Protein

Elongation factor 1-gamma 2

Gene

Os02g0220500

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Probably plays a role in anchoring the complex to other cellular components.By similarity

GO - Molecular functioni

Keywordsi

Molecular functionElongation factor
Biological processProtein biosynthesis

Enzyme and pathway databases

ReactomeiR-OSA-156842 Eukaryotic Translation Elongation

Names & Taxonomyi

Protein namesi
Recommended name:
Elongation factor 1-gamma 2
Short name:
EF-1-gamma 2
Alternative name(s):
eEF-1B gamma 2
Gene namesi
Ordered Locus Names:Os02g0220500, LOC_Os02g12800
ORF Names:B1131G07.11
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
Proteomesi
  • UP000059680 Componenti: Chromosome 2

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002281231 – 418Elongation factor 1-gamma 2Add BLAST418

Proteomic databases

PRIDEiQ6YW46

Expressioni

Gene expression databases

ExpressionAtlasiQ6YW46 differential
GenevisibleiQ6YW46 OS

Interactioni

Subunit structurei

EF-1 is composed of four subunits: alpha, beta, delta, and gamma.

Protein-protein interaction databases

IntActiQ6YW46, 3 interactors

Structurei

3D structure databases

ProteinModelPortaliQ6YW46
SMRiQ6YW46
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 82GST N-terminalAdd BLAST82
Domaini87 – 215GST C-terminalAdd BLAST129
Domaini258 – 418EF-1-gamma C-terminalPROSITE-ProRule annotationAdd BLAST161

Phylogenomic databases

eggNOGiKOG0867 Eukaryota
KOG1627 Eukaryota
COG0625 LUCA
InParanoidiQ6YW46
KOiK03233
OMAiCHISGST

Family and domain databases

Gene3Di3.30.70.1010, 1 hit
InterProiView protein in InterPro
IPR001662 EF1B_G_C
IPR036433 EF1B_G_C_sf
IPR010987 Glutathione-S-Trfase_C-like
IPR036282 Glutathione-S-Trfase_C_sf
IPR040079 Glutathione_S-Trfase
IPR004045 Glutathione_S-Trfase_N
IPR004046 GST_C
IPR036249 Thioredoxin-like_sf
PfamiView protein in Pfam
PF00647 EF1G, 1 hit
PF00043 GST_C, 1 hit
PF02798 GST_N, 1 hit
SFLDiSFLDS00019 Glutathione_Transferase_(cytos, 1 hit
SMARTiView protein in SMART
SM01183 EF1G, 1 hit
SUPFAMiSSF47616 SSF47616, 1 hit
SSF52833 SSF52833, 1 hit
SSF89942 SSF89942, 1 hit
PROSITEiView protein in PROSITE
PS50040 EF1G_C, 1 hit
PS50405 GST_CTER, 1 hit
PS50404 GST_NTER, 1 hit

Sequences (2+)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 2 described isoforms and 1 potential isoform that is computationally mapped.Show allAlign All

Isoform 1 (identifier: Q6YW46-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MALVLHAGSG NKNAFKALIA AEYSGVKVEL VKNFQMGVSN KTPEFLKMNP
60 70 80 90 100
IGKIPVLETP DGPVFESNAI ARYVTRSKAD NPLYGSSLIE YAHIEQWNDF
110 120 130 140 150
SATEVDANIG KWLYPRLGIA PYVAVSEEAA IAALKRSLGA LNTHLASNTY
160 170 180 190 200
LVGHSVTLAD IVMTCNLYMG FARIMTKSFT SEFPHVERYF WTMVNQPNFK
210 220 230 240 250
KVLGDVKQAE SVPPVQKKAP PPKEQKPKEA KKEAPKEAPK PKAVEKPEEE
260 270 280 290 300
EEAPKPKPKN PLDLLPPSKM ILDEWKRLYS NTKTNFREVA IKGFWDMYDP
310 320 330 340 350
EGYSLWFCDY KYNDENTVSF VTMNKVGGFL QRMDLCRKYA FGKMLVIGSE
360 370 380 390 400
PPFKVKGLWL FRGPEIPKFV MDEVYDMELY EWTKVDISDE AQKERVSAMI
410
EDLEPFEGES LLDAKCFK
Length:418
Mass (Da):47,356
Last modified:March 21, 2006 - v2
Checksum:i73C7123AB0605E56
GO
Isoform 2 (identifier: Q6YW46-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     237-240: Missing.

Note: No experimental confirmation available.
Show »
Length:414
Mass (Da):46,930
Checksum:i276119311BE75736
GO

Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A0P0VGJ4A0A0P0VGJ4_ORYSJ
Os02g0220600 protein
Os02g0220600 OSNPB_020220600
227Annotation score:

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_017654237 – 240Missing in isoform 2. 1 Publication4

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP005797 Genomic DNA Translation: BAD17614.1
AP014958 Genomic DNA Translation: BAS77698.1
AK103901 mRNA No translation available.
AY224455 mRNA Translation: AAO72574.1
RefSeqiXP_015625858.1, XM_015770372.1 [Q6YW46-2]
UniGeneiOs.4765

Genome annotation databases

EnsemblPlantsiOs02t0220500-01; Os02t0220500-01; Os02g0220500 [Q6YW46-2]
GeneIDi4328752
GrameneiOs02t0220500-01; Os02t0220500-01; Os02g0220500 [Q6YW46-2]
KEGGiosa:4328752

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP005797 Genomic DNA Translation: BAD17614.1
AP014958 Genomic DNA Translation: BAS77698.1
AK103901 mRNA No translation available.
AY224455 mRNA Translation: AAO72574.1
RefSeqiXP_015625858.1, XM_015770372.1 [Q6YW46-2]
UniGeneiOs.4765

3D structure databases

ProteinModelPortaliQ6YW46
SMRiQ6YW46
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ6YW46, 3 interactors

Proteomic databases

PRIDEiQ6YW46

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOs02t0220500-01; Os02t0220500-01; Os02g0220500 [Q6YW46-2]
GeneIDi4328752
GrameneiOs02t0220500-01; Os02t0220500-01; Os02g0220500 [Q6YW46-2]
KEGGiosa:4328752

Phylogenomic databases

eggNOGiKOG0867 Eukaryota
KOG1627 Eukaryota
COG0625 LUCA
InParanoidiQ6YW46
KOiK03233
OMAiCHISGST

Enzyme and pathway databases

ReactomeiR-OSA-156842 Eukaryotic Translation Elongation

Gene expression databases

ExpressionAtlasiQ6YW46 differential
GenevisibleiQ6YW46 OS

Family and domain databases

Gene3Di3.30.70.1010, 1 hit
InterProiView protein in InterPro
IPR001662 EF1B_G_C
IPR036433 EF1B_G_C_sf
IPR010987 Glutathione-S-Trfase_C-like
IPR036282 Glutathione-S-Trfase_C_sf
IPR040079 Glutathione_S-Trfase
IPR004045 Glutathione_S-Trfase_N
IPR004046 GST_C
IPR036249 Thioredoxin-like_sf
PfamiView protein in Pfam
PF00647 EF1G, 1 hit
PF00043 GST_C, 1 hit
PF02798 GST_N, 1 hit
SFLDiSFLDS00019 Glutathione_Transferase_(cytos, 1 hit
SMARTiView protein in SMART
SM01183 EF1G, 1 hit
SUPFAMiSSF47616 SSF47616, 1 hit
SSF52833 SSF52833, 1 hit
SSF89942 SSF89942, 1 hit
PROSITEiView protein in PROSITE
PS50040 EF1G_C, 1 hit
PS50405 GST_CTER, 1 hit
PS50404 GST_NTER, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiEF1G2_ORYSJ
AccessioniPrimary (citable) accession number: Q6YW46
Secondary accession number(s): Q84PA8
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 21, 2006
Last sequence update: March 21, 2006
Last modified: November 7, 2018
This is version 84 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
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