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Entry version 38 (05 Jun 2019)
Sequence version 1 (05 Jul 2004)
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Protein

Capsid protein VP1

Gene
N/A
Organism
Bombyx mori cytoplasmic polyhedrosis virus (BmCPV)
Status
Reviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Capsid protein self-assembles to form an icosahedral capsid with a pseudo T=2 symmetry, about 50 nm in diameter, and consisting of 120 capsid proteins. The capsid encapsulates the genomic RNA.1 Publication

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Capsid protein VP1
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiBombyx mori cytoplasmic polyhedrosis virus (BmCPV)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri110829 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiVirusesRiboviriaReoviridaeSpinareovirinaeCypovirus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section only exists in viral entries and indicates the host(s) either as a specific organism or taxonomic group of organisms that are susceptible to be infected by a virus.<p><a href='/help/virus_host' target='_top'>More...</a></p>Virus hostiBombyx mori (Silk moth) [TaxID: 7091]

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Cellular componenti

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Capsid protein, Inner capsid protein, T=2 icosahedral capsid protein, Virion

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004032041 – 1333Capsid protein VP1Add BLAST1333

Proteomic databases

PRoteomics IDEntifications database

More...
PRIDEi
Q6TS43

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

Database of interacting proteins

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DIPi
DIP-59130N

Protein interaction database and analysis system

More...
IntActi
Q6TS43, 2 interactors

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

Secondary structure

11333
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

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SMRi
Q6TS43

Database of comparative protein structure models

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ModBasei
Search...

Miscellaneous databases

Relative evolutionary importance of amino acids within a protein sequence

More...
EvolutionaryTracei
Q6TS43

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q6TS43-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MHSTNNNSNK RNNEEKHKQP EIDSSANNGE GTSGTRAQTV GDTATEAGVR
60 70 80 90 100
NETEAGASTR RQTDGTGLSG TNAKIATASS ARQADVEKPA DVTFTIENVD
110 120 130 140 150
DVGIMQQKKP PTVVQSRTDV FNEQFANEAL HPTTKVIFNG LDVNTEVQPL
160 170 180 190 200
SDDFKQISDP KGYLTYSVKY EDQFTKKDKL RASEADDRIV GPTVNLFKYG
210 220 230 240 250
AAVVNIDLNR DFFDTATGID LTKGIPLVQD LLVPIGVTAG AEQSAEYVSG
260 270 280 290 300
LLMVLFKVMT DNRLVIVGET TTPMSNTLST VVNNVLRTTY HNNVGVNPAL
310 320 330 340 350
LRDFTQVNWL NRDITNMLQQ AGTKYGLGLT ETRLDYVRLV KTIVGHALNI
360 370 380 390 400
DHFAASVLNI NLRALMEANV TADDRIKALQ AHSMISTQFH GPNQGALRPE
410 420 430 440 450
LAFDHDHIIR CLMLAAANYP RLEGIIVQIN TGYVASANVI RPVSEKRYFP
460 470 480 490 500
ENLEQNQSAA RLVSAVKARA SEADISSIHL AIAREVSPMF NVHELKKIAE
510 520 530 540 550
SFEDPSSIVV VLEFILFALF FPTEFNRIKG DIQNVLLLFF SRWYPVEYGI
560 570 580 590 600
FVQRGATYTI NAAGEFEFSG RNEKWDQALY LSEHFPALFS DVPLAGANTI
610 620 630 640 650
IAIMRLFTPQ GFLRTDDLAI AANFPRASRN PQTYIPYTNQ RGTVTNEFAS
660 670 680 690 700
RFRTIVATLA NVVNERAVQD DMQKATRSCT KQWLRHLETQ FDNIAVAHTD
710 720 730 740 750
HLSVVYATMS NFMLNFTNNF SGNHATFKPD QYVITSPEGS YKPIIERQGE
760 770 780 790 800
TVDGLTIIDT SIVWPILCQC TYPLVRQSGK GVDAVSIMEE IVYPDPSTTL
810 820 830 840 850
SQSLSVAQVL SKLTLPDAFI NMILSGGDSV VMRTYQTEAD DDLDEGIRMT
860 870 880 890 900
TYDQYLSHIR ERLHITNVPD PIYITGASTP DQIAASVQAT HVAVVLYQSG
910 920 930 940 950
VINGPASTYL RENEVLVVMP DYYDVVSRFA NANLQMNNNR YHESVLEIAD
960 970 980 990 1000
IFDQADFIQT SDAVRQLRAL MPTLSTSQIR HAIERIAQIT DVDSTDYGKL
1010 1020 1030 1040 1050
TLRFLGTLTR SLKMQNAQIR RIRPDGTVLR YDDQIDIEAF RWSRYFLDEL
1060 1070 1080 1090 1100
QLRRLSVGLR LITNPRIARR FNGVRIMYLT DDDPDPDFVP DVPEGYVAVQ
1110 1120 1130 1140 1150
YAHRLFSSSL ANKRNRVTYT HPPTGMAYPS PTGRPHVHMT INERAGMSKL
1160 1170 1180 1190 1200
VADNIIASVI KSNWVVDILD IEYTAEVMTP SEGYTQHVDA ESIMTAPKGK
1210 1220 1230 1240 1250
LFHLQFMDGL LRPEPSAFDP PASGEDMRLI YPLQPISVAR SMRAIVNHNE
1260 1270 1280 1290 1300
VDRPRGAVAP SSYEMDTGTL SRNGDLLYSP VANGQVGIPK LEVDHISFSN
1310 1320 1330
VVSMMTANIR TGDDMAVERV NPDDVRAINI RNA
Length:1,333
Mass (Da):148,408
Last modified:July 5, 2004 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iB0C5BA3E3EE0AA06
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
AY388398 Genomic RNA Translation: AAQ93375.1

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY388398 Genomic RNA Translation: AAQ93375.1

3D structure databases

Select the link destinations:

Protein Data Bank Europe

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PDBei

Protein Data Bank RCSB

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RCSB PDBi

Protein Data Bank Japan

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PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3CNFelectron microscopy3.88A/B1-1333[»]
3IZ3electron microscopy-B/C1-1333[»]
3IZXelectron microscopy-B/C1-1333[»]
3J17electron microscopy4.10B/C1-1333[»]
3JAYelectron microscopy3.00B/C1-1333[»]
3JAZelectron microscopy3.10B/C1-1333[»]
3JB0electron microscopy2.90B/C1-1333[»]
3JB1electron microscopy3.10B/C1-1333[»]
3JB2electron microscopy3.10B/C1-1333[»]
3JB3electron microscopy3.10B/C1-1333[»]
5H0Selectron microscopy3.30B/C1-1333[»]
SMRiQ6TS43
ModBaseiSearch...

Protein-protein interaction databases

DIPiDIP-59130N
IntActiQ6TS43, 2 interactors

Proteomic databases

PRIDEiQ6TS43

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Miscellaneous databases

EvolutionaryTraceiQ6TS43

Family and domain databases

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiCAPSD_CPVBM
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q6TS43
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 11, 2011
Last sequence update: July 5, 2004
Last modified: June 5, 2019
This is version 38 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structure

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
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